Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,242,993	A→G	T84A (ACC→GCC)	exuT →	ExuT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,242,993	0	A	G	100.0%	855.1 / NA	246	T84A (ACC→GCC)	exuT	ExuT
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (126/120); total (126/120)

Only 100 of 251 total aligned reads displayed.

CTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCACCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGT  >  NC_000913/3242903‑3243082

cTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGcc                                                                                         >  2:5127368/1‑93 (MQ=255)

  ggTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCa                                                                                       <  2:6286008/93‑1 (MQ=255)

    tGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAAc                                                                                     <  1:1678053/93‑1 (MQ=255)

     gACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACa                                                                                    <  1:4342975/93‑1 (MQ=255)

      aCGCTCGGCACCGTGCTTGGTTTCCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAg                                                                                   <  2:2070311/93‑1 (MQ=255)

      aCGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAg                                                                                   >  1:3396679/1‑93 (MQ=255)

        gCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTa                                                                                 >  2:659073/1‑93 (MQ=255)

        gCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTa                                                                                 <  1:3523307/93‑1 (MQ=255)

        gCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTa                                                                                 <  2:1366529/93‑1 (MQ=255)

         cTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTAt                                                                                <  2:3388781/93‑1 (MQ=255)

           cGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTc                                                                              >  1:3252453/1‑93 (MQ=255)

           cGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTc                                                                              >  1:3732436/1‑93 (MQ=255)

           cGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTc                                                                              <  1:5111422/93‑1 (MQ=255)

            ggCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTcc                                                                             >  1:5911264/1‑93 (MQ=255)

            ggCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTcc                                                                             <  1:1032578/93‑1 (MQ=255)

            ggCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTcc                                                                             >  2:877401/1‑93 (MQ=255)

            cgCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTcc                                                                             <  1:5946102/92‑1 (MQ=255)

             gCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCt                                                                            >  2:3232199/1‑93 (MQ=255)

              cACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCCACAGTATTGCta                                                                           >  2:1013332/1‑93 (MQ=255)

               aCCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCtat                                                                          >  2:4079926/1‑93 (MQ=255)

                ccGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCtata                                                                         >  2:187993/1‑93 (MQ=255)

                 cGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTatat                                                                        <  2:4012891/93‑1 (MQ=255)

                   tGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATatca                                                                      >  2:1640980/1‑93 (MQ=255)

                   tGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATatca                                                                      >  2:1559409/1‑93 (MQ=255)

                    gCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATatcat                                                                     <  2:1165054/93‑1 (MQ=255)

                     cTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATatcatc                                                                    <  1:2665277/93‑1 (MQ=255)

                     cTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATatcatc                                                                    >  1:547411/1‑93 (MQ=255)

                      ttGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCg                                                                   >  2:5292612/1‑93 (MQ=255)

                      ttGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCg                                                                   >  2:2335369/1‑93 (MQ=255)

                      ttGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGCTAAACATCTCCGCCCAACAGTATTCCTATATCATCg                                                                   >  2:5433493/1‑93 (MQ=255)

                       tGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGc                                                                  <  1:2921230/93‑1 (MQ=255)

                       tGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGc                                                                  >  2:5940577/1‑93 (MQ=255)

                       tGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGc                                                                  >  1:4385866/1‑93 (MQ=255)

                        ggTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCa                                                                 >  1:3479998/1‑93 (MQ=255)

                         gTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAg                                                                <  1:2839925/93‑1 (MQ=255)

                          ttACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGc                                                               <  2:6174581/93‑1 (MQ=255)

                            aCCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCt                                                             >  2:5332342/1‑93 (MQ=255)

                             ccTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTa                                                            <  1:3819638/93‑1 (MQ=255)

                             ccTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTa                                                            <  1:4085208/93‑1 (MQ=255)

                               tGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTAtt                                                          >  1:4043270/1‑93 (MQ=255)

                                gACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTc                                                         <  1:779647/93‑1 (MQ=255)

                                gACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTc                                                         <  1:3664118/93‑1 (MQ=255)

                                gACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTc                                                         >  1:90091/1‑93 (MQ=255)

                                gACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTc                                                         <  2:6094227/93‑1 (MQ=255)

                                gACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTc                                                         <  1:5954107/93‑1 (MQ=255)

                                  cgcgTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTctg                                                       <  1:1178768/93‑1 (MQ=255)

                                   gcgTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTctgc                                                      >  2:3841347/1‑93 (MQ=255)

                                     gTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTctgctg                                                    >  2:2525210/1‑93 (MQ=255)

                                      tAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCGTCGCAGCCTAGTCtgctgc                                                   <  1:6268778/93‑1 (MQ=255)

                                      tAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCtgctgc                                                   <  2:373813/93‑1 (MQ=255)

                                       aaCACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTgctgct                                                  <  2:5509560/93‑1 (MQ=255)

                                          acTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTtat                                               <  1:3919645/93‑1 (MQ=255)

                                          acTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTtat                                               <  1:1353930/93‑1 (MQ=255)

                                            tgtgGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATAc                                             >  1:1618850/1‑93 (MQ=255)

                                             gtgGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACg                                            >  2:2739693/1‑93 (MQ=255)

                                             gtgGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACg                                            <  2:6423506/93‑1 (MQ=255)

                                               ggcggcAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGt                                          >  2:4128587/1‑93 (MQ=255)

                                               ggcggcAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGt                                          <  2:5009643/93‑1 (MQ=255)

                                               ggcggcAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGt                                          <  2:2386807/93‑1 (MQ=255)

                                                gcggcAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTc                                         <  1:4549601/93‑1 (MQ=255)

                                                gcggcAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTc                                         >  1:2459386/1‑93 (MQ=255)

                                                  ggcAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCAt                                       <  1:2402402/93‑1 (MQ=255)

                                                     aGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCa                                    >  2:4984775/1‑93 (MQ=255)

                                                      gCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCaa                                   >  2:6107108/1‑93 (MQ=255)

                                                         gcgcCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATCTCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCg                                >  1:1422890/1‑93 (MQ=255)

                                                           gcCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGGAGTCCTATATCATTGCATCCTATTCTGCTGCTTATACGCGCACGCAACCGGt                              >  1:4517215/1‑93 (MQ=255)

                                                            ccAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTa                             <  2:4787983/93‑1 (MQ=255)

                                                            ccAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTa                             >  1:5608207/1‑93 (MQ=255)

                                                            ccAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTa                             >  2:4519953/1‑93 (MQ=255)

                                                              aaCTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGc                           >  1:2477476/1‑93 (MQ=255)

                                                               aCTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCa                          >  1:1085565/1‑93 (MQ=255)

                                                               aCTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCa                          >  2:2883198/1‑93 (MQ=255)

                                                               aCTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCa                          <  1:2262381/93‑1 (MQ=255)

                                                                ctctGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAg                         >  2:398812/1‑93 (MQ=255)

                                                                ctctGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAg                         >  2:1525391/1‑93 (MQ=255)

                                                                 tctGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAgg                        >  2:1128001/1‑93 (MQ=255)

                                                                  ctGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGt                       <  1:6088018/93‑1 (MQ=255)

                                                                   tGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGtt                      <  1:5050238/93‑1 (MQ=255)

                                                                    gATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTa                     >  2:5521082/1‑93 (MQ=255)

                                                                    gATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTa                     >  1:4622794/1‑93 (MQ=255)

                                                                     aTGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTAt                    <  2:138209/93‑1 (MQ=255)

                                                                     aTGGAAGAGTTAAACAGCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGGCATGCAACCGGTAGCAGGTTAt                    <  1:21937/93‑1 (MQ=255)

                                                                      tGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATg                   >  2:4347256/1‑93 (MQ=255)

                                                                      tGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGCCATGCAACCGGTAGCAGGTTATg                   >  1:3575964/1‑93 (MQ=255)

                                                                        gAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTa                 <  1:2707921/93‑1 (MQ=255)

                                                                        gAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTa                 >  1:1264997/1‑93 (MQ=255)

                                                                          agagTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACt               >  1:6378797/1‑93 (MQ=255)

                                                                          agagTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACt               >  2:590121/1‑93 (MQ=255)

                                                                             gTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGa            <  1:3004757/93‑1 (MQ=255)

                                                                             gTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGa            >  1:4727853/1‑93 (MQ=255)

                                                                             attAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGa            <  2:4581643/92‑1 (MQ=255)

                                                                                aaaCATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGAtgt         >  1:959126/1‑93 (MQ=255)

                                                                                aaaCATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGAtgt         <  2:2655359/93‑1 (MQ=255)

                                                                                 aaCATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGAtgtg        >  2:4371555/1‑93 (MQ=255)

                                                                                  aCATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGc       <  1:2013289/93‑1 (MQ=255)

                                                                                   cATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCt      >  2:2772371/1‑93 (MQ=255)

                                                                                       tcCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTggga  >  2:1742714/1‑92 (MQ=255)

                                                                                       tcCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGt  <  2:484232/93‑1 (MQ=255)

                                                                                       tcCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGt  >  1:812442/1‑93 (MQ=255)

                                                                                       tcCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGt  >  2:2595743/1‑93 (MQ=255)

CTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCACCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGT  >  NC_000913/3242903‑3243082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCACCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTACGA  >  NC_000913/3242900‑3243086

GCACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCG                                                                                               <  SRR4302534.4013121/94‑1 (MQ=60)

 CACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGGAGAGTTAAACATCTCCGC                                                                                              >  SRR4302534.6023836/1‑94 (MQ=60)

 CACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGC                                                                                              <  SRR4302534.2805794/94‑1 (MQ=60)

 CACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGC                                                                                              <  SRR4302534.4303668/94‑1 (MQ=60)

  ACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCC                                                                                             <  SRR4302534.5299584/94‑1 (MQ=60)

  ACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCC                                                                                             >  SRR4302534.3864256/1‑94 (MQ=60)

   CTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCC                                                                                            <  SRR4302534.1066687/94‑1 (MQ=60)

     GGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCCACTCTGATGGAAGAGTTAAACATCTCCGCCCCA                                                                                          >  SRR4302534.4692712/1‑94 (MQ=60)

       TGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACA                                                                                        <  SRR4302534.1721713/94‑1 (MQ=60)

        GACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAG                                                                                       >  SRR4302534.3487830/1‑94 (MQ=60)

        GACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAG                                                                                       <  SRR4302534.4460290/94‑1 (MQ=60)

           GCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTAT                                                                                    <  SRR4302534.3618069/94‑1 (MQ=60)

             TCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTC                                                                                  >  SRR4302534.3339083/1‑94 (MQ=60)

             TCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTC                                                                                  >  SRR4302534.3832725/1‑94 (MQ=60)

             TCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTC                                                                                  <  SRR4302534.6114002/94‑1 (MQ=60)

              TGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCC                                                                                 >  SRR4302534.2117568/1‑94 (MQ=60)

              CGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCC                                                                                 <  SRR4302534.5249363/94‑1 (MQ=60)

              CGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCC                                                                                 <  SRR4302534.5249362/94‑1 (MQ=60)

              CGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCC                                                                                 >  SRR4302534.6434796/1‑94 (MQ=60)

              CGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCC                                                                                 >  SRR4302534.6071780/1‑94 (MQ=60)

               GGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCT                                                                                <  SRR4302534.1059215/94‑1 (MQ=60)

               GGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCT                                                                                >  SRR4302534.364716/1‑94 (MQ=60)

               CGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCT                                                                                <  SRR4302534.6107546/94‑1 (MQ=60)

                 CACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGGGCCAACTCTGATGGAAGAGTTGAACAGCTCCGCCCCACAGTATTCCTAT                                                                              >  SRR4302534.2764524/1‑94 (MQ=60)

                 CACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTAT                                                                              <  SRR4302534.3029426/94‑1 (MQ=60)

                  ACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATA                                                                             <  SRR4302534.2883304/94‑1 (MQ=60)

                    CGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATC                                                                           >  SRR4302534.6195766/1‑94 (MQ=60)

                      TGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCAT                                                                         >  SRR4302534.1626561/1‑94 (MQ=60)

                      TGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCAT                                                                         <  SRR4302534.2915432/94‑1 (MQ=60)

                       GCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATC                                                                        >  SRR4302534.560923/1‑94 (MQ=60)

                        CTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCG                                                                       >  SRR4302534.951230/1‑94 (MQ=60)

                        CTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCG                                                                       <  SRR4302534.2735726/94‑1 (MQ=60)

                         TTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGC                                                                      >  SRR4302534.4504114/1‑94 (MQ=60)

                          TGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCA                                                                     <  SRR4302534.2997898/94‑1 (MQ=60)

                          TGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCA                                                                     <  SRR4302534.3043888/94‑1 (MQ=60)

                          TGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCA                                                                     >  SRR4302534.3573534/1‑94 (MQ=60)

                            GTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGC                                                                   <  SRR4302534.6456244/94‑1 (MQ=60)

                            GTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGC                                                                   <  SRR4302534.2914530/94‑1 (MQ=60)

                              TACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCT                                                                 >  SRR4302534.1002988/1‑94 (MQ=60)

                              TACCTGACGCGTAACACTGGGGCGGTAGCCGCGCCGAGCCTGATGGAAGAGTTAAACATGTCAGGCCAACAGTACTCTTATATCATCGCAGCCT                                                                 >  SRR4302534.4492845/1‑94 (MQ=23)

                               ACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTA                                                                >  SRR4302534.3796756/1‑94 (MQ=60)

                               ACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTA                                                                <  SRR4302534.2525409/94‑1 (MQ=60)

                                CCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTAT                                                               <  SRR4302534.4194906/94‑1 (MQ=60)

                                CCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTAT                                                               <  SRR4302534.3922255/94‑1 (MQ=60)

                                 CTGACGCGTAACACTGTGGCGGCCGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATT                                                              >  SRR4302534.5052190/1‑94 (MQ=60)

                                 CTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATT                                                              >  SRR4302534.4151697/1‑94 (MQ=60)

                                  TGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTC                                                             >  SRR4302534.92494/1‑94 (MQ=60)

                                   GACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCT                                                            <  SRR4302534.3762583/94‑1 (MQ=60)

                                   GACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCT                                                            <  SRR4302534.799084/94‑1 (MQ=60)

                                   GACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCT                                                            <  SRR4302534.6115786/94‑1 (MQ=60)

                                     CGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGC                                                          <  SRR4302534.1209751/94‑1 (MQ=60)

                                       CGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTG                                                        >  SRR4302534.2868927/1‑94 (MQ=60)

                                       CGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTG                                                        <  SRR4302534.5812792/94‑1 (MQ=60)

                                        GTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGGAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGC                                                       >  SRR4302534.1330106/1‑94 (MQ=60)

                                         TAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCGTCGCAGCCTAGTCTGCTGCT                                                      <  SRR4302534.6438524/94‑1 (MQ=60)

                                         TAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCT                                                      <  SRR4302534.2261678/94‑1 (MQ=60)

                                         TAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCT                                                      <  SRR4302534.6588474/94‑1 (MQ=60)

                                          AACACTGTGGCGGCGGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTT                                                     >  SRR4302534.464280/1‑94 (MQ=60)

                                          AACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTT                                                     <  SRR4302534.4686170/94‑1 (MQ=60)

                                          AACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTT                                                     >  SRR4302534.634588/1‑94 (MQ=60)

                                           ACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTA                                                    <  SRR4302534.5678703/94‑1 (MQ=60)

                                             ACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATA                                                  >  SRR4302534.4484969/1‑94 (MQ=60)

                                             ACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATA                                                  <  SRR4302534.1389615/94‑1 (MQ=60)

                                             ACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATA                                                  <  SRR4302534.4024690/94‑1 (MQ=60)

                                              CTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATAC                                                 <  SRR4302534.3890231/94‑1 (MQ=60)

                                              CTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATAC                                                 <  SRR4302534.1010908/94‑1 (MQ=60)

                                              CTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATAC                                                 >  SRR4302534.1661088/1‑94 (MQ=60)

                                               TGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGGCCAACAGCGTTCCTATATCATCGCAGCCTATTCTTCTTCTTGTACG                                                >  SRR4302534.4773891/1‑94 (MQ=60)

                                               TGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACG                                                >  SRR4302534.5405090/1‑94 (MQ=60)

                                                GTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGG                                               <  SRR4302534.6109588/94‑1 (MQ=60)

                                                  GGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTC                                             >  SRR4302534.5209131/1‑94 (MQ=60)

                                                  GGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTC                                             >  SRR4302534.2524725/1‑94 (MQ=60)

                                                   GCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCA                                            <  SRR4302534.4672938/94‑1 (MQ=60)

                                                    CGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCAT                                           >  SRR4302534.2361909/1‑94 (MQ=60)

                                                    CGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCAT                                           <  SRR4302534.804026/94‑1 (MQ=60)

                                                    CGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCAT                                           <  SRR4302534.4606068/94‑1 (MQ=60)

                                                     GGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATG                                          <  SRR4302534.2466254/94‑1 (MQ=60)

                                                     GGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATG                                          >  SRR4302534.3320039/1‑94 (MQ=60)

                                                       CAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCA                                        >  SRR4302534.4242788/1‑94 (MQ=60)

                                                          CTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACC                                     <  SRR4302534.1836505/94‑1 (MQ=60)

                                                           TGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATCTCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCG                                    >  SRR4302534.1460327/1‑94 (MQ=60)

                                                           TGCGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCG                                    <  SRR4302534.2544523/94‑1 (MQ=60)

                                                             CGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGT                                  >  SRR4302534.3753607/1‑94 (MQ=60)

                                                             CGCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGGAGTCCTATATCATTGCATCCTATTCTGCTGCTTATACGCGCACGCAACCGGT                                  >  SRR4302534.4639574/1‑94 (MQ=60)

                                                              GCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTA                                 >  SRR4302534.3691742/1‑94 (MQ=60)

                                                              GCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTA                                 >  SRR4302534.1402252/1‑94 (MQ=60)

                                                              GCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTA                                 >  SRR4302534.5759911/1‑94 (MQ=60)

                                                              GCCAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTA                                 >  SRR4302534.251321/1‑94 (MQ=60)

                                                                CAACTCTGATGGAAGAGTTAAACATCTCCGCCCCACAGTATTCCTATATCATCGCAACCTATTCTGCTGCTTATATGGTCCTGCAACCGCTAGC                               >  SRR4302534.4185730/1‑94 (MQ=60)

                                                                CAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGC                               >  SRR4302534.5011166/1‑94 (MQ=60)

                                                                CAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGC                               >  SRR4302534.3419157/1‑94 (MQ=60)

                                                                CAACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGC                               >  SRR4302534.2543307/1‑94 (MQ=60)

                                                                 AACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCA                              <  SRR4302534.4124780/94‑1 (MQ=60)

                                                                 AACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCA                              >  SRR4302534.1113784/1‑94 (MQ=60)

                                                                 AACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCA                              >  SRR4302534.1784342/1‑94 (MQ=60)

                                                                  ACTCTGATGGAGGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAG                             <  SRR4302534.4594057/94‑1 (MQ=60)

                                                                  ACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAG                             <  SRR4302534.2322370/94‑1 (MQ=60)

                                                                  ACTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAG                             <  SRR4302534.163323/94‑1 (MQ=60)

                                                                   CTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGG                            >  SRR4302534.1167341/1‑94 (MQ=60)

                                                                   CTCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGG                            <  SRR4302534.1362943/94‑1 (MQ=60)

                                                                   CTCTGAGGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGGCATGCAACCGGTAGCAGG                            >  SRR4302534.4300456/1‑94 (MQ=60)

                                                                    TCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGT                           >  SRR4302534.3532605/1‑94 (MQ=60)

                                                                    TCTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGT                           >  SRR4302534.723513/1‑94 (MQ=60)

                                                                     CTGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTT                          <  SRR4302534.6253573/94‑1 (MQ=60)

                                                                      TGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTA                         >  SRR4302534.4748225/1‑94 (MQ=60)

                                                                      TGATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTA                         <  SRR4302534.5186604/94‑1 (MQ=60)

                                                                        ATGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGCCATGCAACCGGTAGCAGGTTATG                       >  SRR4302534.3672144/1‑94 (MQ=60)

                                                                        ATGGAAGAGTTAAACAGCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGGCATGCAACCGGTAGCAGGTTATG                       <  SRR4302534.22518/94‑1 (MQ=60)

                                                                         TGGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGT                      <  SRR4302534.920661/94‑1 (MQ=60)

                                                                          GGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTA                     <  SRR4302534.3610356/94‑1 (MQ=60)

                                                                          GGAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTA                     >  SRR4302534.1298313/1‑94 (MQ=60)

                                                                           GAAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTAC                    <  SRR4302534.2779423/94‑1 (MQ=60)

                                                                            AAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACT                   >  SRR4302534.6551088/1‑94 (MQ=60)

                                                                            AAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACT                   <  SRR4302534.6013788/94‑1 (MQ=60)

                                                                            AAGAGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACT                   <  SRR4302534.1139483/94‑1 (MQ=60)

                                                                               AGTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGA                >  SRR4302534.4856254/1‑94 (MQ=60)

                                                                                GTTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGAT               <  SRR4302534.3083360/94‑1 (MQ=60)

                                                                                 TTAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATG              <  SRR4302534.1283872/94‑1 (MQ=60)

                                                                                  TAAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGT             >  SRR4302534.983561/1‑94 (MQ=60)

                                                                                   AAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTG            >  SRR4302534.1708100/1‑94 (MQ=60)

                                                                                   AAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTG            <  SRR4302534.3603680/94‑1 (MQ=60)

                                                                                   AAACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTG            <  SRR4302534.2276166/94‑1 (MQ=60)

                                                                                    AACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGC           >  SRR4302534.3348726/1‑94 (MQ=60)

                                                                                     ACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCT          <  SRR4302534.2065965/94‑1 (MQ=60)

                                                                                     ACATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCT          >  SRR4302534.2520604/1‑94 (MQ=60)

                                                                                      CATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTG         <  SRR4302534.4846775/94‑1 (MQ=60)

                                                                                      CATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATATGCTG         >  SRR4302534.917668/1‑94 (MQ=60)

                                                                                       ATCTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGG        >  SRR4302534.4029244/1‑94 (MQ=60)

                                                                                         CTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGT      <  SRR4302534.3947465/94‑1 (MQ=60)

                                                                                         CTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGT      >  SRR4302534.832855/1‑94 (MQ=60)

                                                                                         CTCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGATATGTACTGGATGTGCTGGGT      >  SRR4302534.6076584/1‑94 (MQ=60)

                                                                                          TCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTA     >  SRR4302534.4646197/1‑94 (MQ=60)

                                                                                          TCCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTA     <  SRR4302534.2618110/94‑1 (MQ=60)

                                                                                           CCGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTAC    <  SRR4302534.1571467/94‑1 (MQ=60)

                                                                                           CCGCCCAACAGGATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTAC    >  SRR4302534.6481190/1‑94 (MQ=60)

                                                                                            CGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTACG   >  SRR4302534.3809828/1‑94 (MQ=60)

                                                                                            CGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTACG   <  SRR4302534.4452515/94‑1 (MQ=60)

                                                                                            CGCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTACG   <  SRR4302534.6101875/94‑1 (MQ=60)

                                                                                             GCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTACGA  >  SRR4302534.3962798/1‑94 (MQ=60)

                                                                                             GCCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGCTATGTACTGGATGTGCTGGGTACGA  >  SRR4302534.3412374/1‑94 (MQ=60)

GCACTGGTGACGCTCGGCACCGTGCTTGGTTACCTGACGCGTAACACTGTGGCGGCAGCTGCGCCAACTCTGATGGAAGAGTTAAACATCTCCACCCAACAGTATTCCTATATCATCGCAGCCTATTCTGCTGCTTATACGGTCATGCAACCGGTAGCAGGTTATGTACTGGATGTGCTGGGTACGA  >  NC_000913/3242900‑3243086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`