Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,458,811	C→T	A51V (GCG→GTG)	hofG →	putative general protein secretion protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,458,811	0	C	T	100.0%	911.5 / NA	237	A51V (GCG→GTG)	hofG	putative general protein secretion protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (128/109); total (128/109)

Only 100 of 243 total aligned reads displayed.

TTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGCGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGA  >  NC_000913/3458721‑3458900

  aTCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTg                                                                                       >  2:697529/1‑93 (MQ=255)

   tCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTgg                                                                                      <  2:2422751/93‑1 (MQ=255)

        gTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAAc                                                                                 >  1:2707800/1‑93 (MQ=255)

        gTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAAc                                                                                 >  2:5903258/1‑93 (MQ=255)

           cTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGcc                                                                              >  1:5226947/1‑93 (MQ=255)

            ttGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGccc                                                                             <  2:4280412/93‑1 (MQ=255)

             tGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCt                                                                            <  1:1056357/93‑1 (MQ=255)

             tGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCt                                                                            <  1:261659/93‑1 (MQ=255)

             tGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCt                                                                            <  2:1983669/93‑1 (MQ=255)

              gCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCtt                                                                           >  1:1410783/1‑93 (MQ=255)

               ccAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTg                                                                          >  1:5968729/1‑93 (MQ=255)

                cAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGa                                                                         >  1:1981830/1‑93 (MQ=255)

                cAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGa                                                                         <  2:186597/93‑1 (MQ=255)

                 aGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGat                                                                        >  2:4406476/1‑93 (MQ=255)

                 aGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGat                                                                        >  2:6056170/1‑93 (MQ=255)

                  gCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGata                                                                       >  1:2320826/1‑93 (MQ=255)

                   ccTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGatat                                                                      <  2:5544057/93‑1 (MQ=255)

                   ccTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGatat                                                                      <  1:6420574/93‑1 (MQ=255)

                    cTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATg                                                                     >  1:3881496/1‑93 (MQ=255)

                       gtggtTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTAc                                                                  <  1:1006202/93‑1 (MQ=255)

                         ggtTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACaa                                                                <  1:2169470/93‑1 (MQ=255)

                         ggtTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACaa                                                                >  1:2643061/1‑93 (MQ=255)

                          gtTCCTAACGTAGTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACaaa                                                               <  1:290517/93‑1 (MQ=255)

                           ttCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAAc                                                              <  1:914715/93‑1 (MQ=255)

                            tCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAACCGCCCTTGATATGTACAAACt                                                             <  1:32006/93‑1 (MQ=255)

                            tCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGGACAAACt                                                             >  1:1149607/1‑93 (MQ=255)

                             cctaacctaaTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTc                                                            <  1:776386/93‑1 (MQ=255)

                                  cctaaTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACaa                                                       >  2:5445426/1‑93 (MQ=255)

                                  cctaaTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACaa                                                       <  1:3834512/93‑1 (MQ=255)

                                   ctaaTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAat                                                      >  1:6301477/1‑93 (MQ=255)

                                    taaTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAatc                                                     >  2:4087648/1‑93 (MQ=255)

                                     aaTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAatca                                                    >  1:4710842/1‑93 (MQ=255)

                                      aTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATCTTGTGGTACTGGAAAACGCCCTTGATATGTACAAACTCGACAatcat                                                   >  2:2665415/1‑93 (MQ=255)

                                      aTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAatcat                                                   >  2:2700521/1‑93 (MQ=255)

                                      aTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAatcat                                                   >  1:4335950/1‑93 (MQ=255)

                                       tGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAatcatc                                                  <  1:4438370/93‑1 (MQ=255)

                                       tGGGAAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAatcatc                                                  <  1:2523362/93‑1 (MQ=255)

                                        gggCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAAtcatca                                                 <  1:1310581/93‑1 (MQ=255)

                                        gggCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAAtcatca                                                 >  1:3064794/1‑93 (MQ=255)

                                        gggCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAAtcatca                                                 >  1:3438037/1‑93 (MQ=255)

                                           cAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCTACAATCATCACTa                                              <  1:542884/93‑1 (MQ=255)

                                           cAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTa                                              >  2:2157850/1‑93 (MQ=255)

                                              tAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATcc                                           >  1:4790949/1‑93 (MQ=255)

                                               aaaGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCa                                          >  2:2592041/1‑93 (MQ=255)

                                               aaaGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCa                                          <  1:2919852/93‑1 (MQ=255)

                                                 aGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAAc                                        >  2:6429764/1‑93 (MQ=255)

                                                  gAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAAcc                                       >  2:362524/1‑93 (MQ=255)

                                                  gAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAAcc                                       >  1:5528681/1‑93 (MQ=255)

                                                  gAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAAcc                                       <  1:1703040/93‑1 (MQ=255)

                                                   aaaaGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACca                                      <  1:6020926/93‑1 (MQ=255)

                                                    aaaGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACcac                                     >  2:2908714/1‑93 (MQ=255)

                                                     aaGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACcaca                                    >  1:503871/1‑93 (MQ=255)

                                                     aaGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACcaca                                    >  2:6209515/1‑93 (MQ=255)

                                                      aGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACaa                                   >  2:5684763/1‑93 (MQ=255)

                                                      aGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACaa                                   <  2:2293851/93‑1 (MQ=255)

                                                      aGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACaa                                   >  1:390802/1‑93 (MQ=255)

                                                        gCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAAt                                 <  2:3394392/93‑1 (MQ=255)

                                                         cGGATAAGCAAAAAGCCGTCAGTGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATc                                <  2:6271403/93‑1 (MQ=255)

                                                          ggATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCa                               <  2:789601/93‑1 (MQ=255)

                                                          ggATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCa                               <  2:6080711/93‑1 (MQ=255)

                                                            aTAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAgg                             <  1:6416838/93‑1 (MQ=255)

                                                             tAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAggg                            >  2:3672821/1‑93 (MQ=255)

                                                             tAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAggg                            <  1:1878314/93‑1 (MQ=255)

                                                              aaGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAgggg                           <  2:4100968/93‑1 (MQ=255)

                                                              aaGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAgggg                           >  1:5511639/1‑93 (MQ=255)

                                                              aaGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAgggg                           <  1:5750173/93‑1 (MQ=255)

                                                                gCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCt                         >  1:4238180/1‑93 (MQ=255)

                                                                acAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCt                         <  2:5304635/92‑1 (MQ=255)

                                                                 cAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCtt                        <  2:4134325/93‑1 (MQ=255)

                                                                 cAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCtt                        <  1:5875428/93‑1 (MQ=255)

                                                                  aaaaaGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTg                       >  2:3532992/1‑93 (MQ=255)

                                                                  aaaaaGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGCGCTTg                       >  2:3199166/1‑93 (MQ=255)

                                                                   aaaaGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGa                      >  2:1657961/1‑93 (MQ=255)

                                                                   aaaaGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGa                      >  2:109848/1‑93 (MQ=255)

                                                                     aaGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAAt                    <  2:6443761/93‑1 (MQ=255)

                                                                     aaGCCGCCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATAACTATACAACCACAAATCAGGGGCTTGAAt                    >  1:1824213/1‑93 (MQ=255)

                                                                      aGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATc                   >  1:5716762/1‑93 (MQ=255)

                                                                      aGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATc                   <  2:5390184/93‑1 (MQ=255)

                                                                      aGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATc                   <  2:2140953/93‑1 (MQ=255)

                                                                       gCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATcc                  <  2:1577982/93‑1 (MQ=255)

                                                                       accGTAAGAGATATTGTGGTACTGGAAACCGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATcc                  <  1:4143267/92‑1 (MQ=255)

                                                                        ccGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCt                 >  1:2090168/1‑93 (MQ=255)

                                                                        ccGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCt                 <  2:468031/93‑1 (MQ=255)

                                                                          gTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTta               >  2:4590944/1‑93 (MQ=255)

                                                                          gTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTta               <  2:4858694/93‑1 (MQ=255)

                                                                           tCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTtag              >  2:518573/1‑93 (MQ=255)

                                                                            cAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTtagt             >  1:6192617/1‑93 (MQ=255)

                                                                            cAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTtagt             <  2:121658/93‑1 (MQ=255)

                                                                             aGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTtagta            >  2:3762015/1‑93 (MQ=255)

                                                                              gCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCACCCACAAATCAGGGGCTTGAATCCTtagtag           <  1:2448192/93‑1 (MQ=255)

                                                                              gCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTtagtag           >  1:5295855/1‑93 (MQ=255)

                                                                              gCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTtagtag           >  2:1399021/1‑93 (MQ=255)

                                                                               cGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGa          >  1:4606946/1‑93 (MQ=255)

                                                                                gATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGaa         <  2:2278119/93‑1 (MQ=255)

                                                                                gATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGaa         >  1:2977960/1‑93 (MQ=255)

                                                                                gATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGaa         <  2:1933476/93‑1 (MQ=255)

                                                                                 atatTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGCATCCTTAGTAGAAg        >  2:2782636/1‑93 (MQ=255)

                                                                                  tatTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAgc       <  2:3858803/93‑1 (MQ=255)

                                                                                      gtggtgCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCg   >  2:2319694/1‑93 (MQ=255)

                                                                                       tgGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGa  >  1:3367712/1‑93 (MQ=255)

TTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGCGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGA  >  NC_000913/3458721‑3458900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGCGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGACACT  >  NC_000913/3458718‑3458904

TCATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGT                                                                                               <  SRR4302534.3313154/94‑1 (MQ=60)

TCATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGT                                                                                               >  SRR4302534.2653533/1‑94 (MQ=60)

TCATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGT                                                                                               >  SRR4302534.1569425/1‑94 (MQ=60)

 CATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTG                                                                                              >  SRR4302534.4987097/1‑94 (MQ=60)

 CATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTG                                                                                              <  SRR4302534.3222540/94‑1 (MQ=60)

 CATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTG                                                                                              <  SRR4302534.2216897/94‑1 (MQ=60)

  ATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGC                                                                                             <  SRR4302534.6251712/94‑1 (MQ=60)

   TTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCT                                                                                            >  SRR4302534.6299767/1‑94 (MQ=60)

    TATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTG                                                                                           <  SRR4302534.1218359/94‑1 (MQ=60)

     ATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGG                                                                                          <  SRR4302534.2755455/94‑1 (MQ=60)

      TCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGA                                                                                         >  SRR4302534.3743321/1‑94 (MQ=60)

       CGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAA                                                                                        >  SRR4302534.3957835/1‑94 (MQ=60)

         GCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAA                                                                                      >  SRR4302534.3296812/1‑94 (MQ=60)

          CGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAAC                                                                                     >  SRR4302534.2779300/1‑94 (MQ=60)

           GTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACG                                                                                    <  SRR4302534.6593279/94‑1 (MQ=60)

             ACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCC                                                                                  >  SRR4302534.5368044/1‑94 (MQ=60)

             ACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCC                                                                                  >  SRR4302534.5989283/1‑94 (MQ=60)

                TGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTT                                                                               >  SRR4302534.1048463/1‑94 (MQ=60)

                TGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTT                                                                               <  SRR4302534.4471971/94‑1 (MQ=60)

                TGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTT                                                                               <  SRR4302534.1083706/94‑1 (MQ=60)

                TGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTT                                                                               <  SRR4302534.81777/94‑1 (MQ=60)

                TGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTT                                                                               <  SRR4302534.268453/94‑1 (MQ=60)

                TGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTT                                                                               >  SRR4302534.1447896/1‑94 (MQ=60)

                 GCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTG                                                                              <  SRR4302534.2987391/94‑1 (MQ=60)

                 GCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTG                                                                              >  SRR4302534.6579481/1‑94 (MQ=60)

                 GCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTG                                                                              >  SRR4302534.6130823/1‑94 (MQ=60)

                  CCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGA                                                                             >  SRR4302534.2033727/1‑94 (MQ=60)

                  CCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGA                                                                             >  SRR4302534.4312103/1‑94 (MQ=60)

                    AGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATA                                                                           >  SRR4302534.4779291/1‑94 (MQ=60)

                    AGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATA                                                                           >  SRR4302534.2382418/1‑94 (MQ=60)

                      CCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATG                                                                         >  SRR4302534.3985715/1‑94 (MQ=60)

                      CCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATG                                                                         <  SRR4302534.6593761/94‑1 (MQ=60)

                        cgtcGGTTCCTAACCTACTGGGCAATAAAAAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTA                                                                       <  SRR4302534.1912247/90‑1 (MQ=60)

                          GTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACA                                                                     <  SRR4302534.2080563/94‑1 (MQ=60)

                          GTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACA                                                                     <  SRR4302534.1032014/94‑1 (MQ=60)

                           TGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAA                                                                    <  SRR4302534.4123766/94‑1 (MQ=60)

                           TGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAA                                                                    >  SRR4302534.2712957/1‑94 (MQ=60)

                            GGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAA                                                                   <  SRR4302534.2226772/94‑1 (MQ=60)

                             GTTCCTAACGTAGTGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAAC                                                                  <  SRR4302534.298027/94‑1 (MQ=60)

                              TTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACT                                                                 <  SRR4302534.937982/94‑1 (MQ=60)

                              TTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACT                                                                 >  SRR4302534.2416947/1‑94 (MQ=60)

                              TTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACT                                                                 <  SRR4302534.2171701/94‑1 (MQ=60)

                              TTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGGACAAACT                                                                 >  SRR4302534.1179742/1‑94 (MQ=60)

                               TCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAACCGCCCTTGATATGTACAAACTC                                                                <  SRR4302534.32849/94‑1 (MQ=60)

                                CCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCG                                                               <  SRR4302534.795731/94‑1 (MQ=60)

                                   AACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACA                                                            >  SRR4302534.1006017/1‑94 (MQ=60)

                                   AACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACA                                                            >  SRR4302534.240407/1‑94 (MQ=60)

                                     CCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAAT                                                          >  SRR4302534.6471893/1‑94 (MQ=60)

                                     CCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAAT                                                          <  SRR4302534.3937486/94‑1 (MQ=60)

                                       TAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCA                                                        <  SRR4302534.6084800/94‑1 (MQ=60)

                                       TAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCA                                                        >  SRR4302534.4838744/1‑94 (MQ=60)

                                        AATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCAT                                                       >  SRR4302534.4453157/1‑94 (MQ=60)

                                          TGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCA                                                     <  SRR4302534.2691407/94‑1 (MQ=60)

                                          TGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCA                                                     >  SRR4302534.6007508/1‑94 (MQ=60)

                                          TGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCA                                                     <  SRR4302534.4558260/94‑1 (MQ=60)

                                          TGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCA                                                     >  SRR4302534.3530434/1‑94 (MQ=60)

                                          TGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCA                                                     >  SRR4302534.3145243/1‑94 (MQ=60)

                                          TGGGAAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCA                                                     <  SRR4302534.2590329/94‑1 (MQ=60)

                                           GGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCAC                                                    <  SRR4302534.1345138/94‑1 (MQ=60)

                                           GGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCAC                                                    >  SRR4302534.641020/1‑94 (MQ=60)

                                            GGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACT                                                   <  SRR4302534.5885635/94‑1 (MQ=60)

                                              CAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCTACAATCATCACTAT                                                 <  SRR4302534.556302/94‑1 (MQ=60)

                                              CAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTAT                                                 >  SRR4302534.5732324/1‑94 (MQ=60)

                                                ATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCC                                               >  SRR4302534.4921035/1‑94 (MQ=60)

                                                 TAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCA                                              >  SRR4302534.6191592/1‑94 (MQ=60)

                                                 TAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCA                                              >  SRR4302534.4001043/1‑94 (MQ=60)

                                                  AAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAA                                             >  SRR4302534.1902308/1‑94 (MQ=60)

                                                  AAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAA                                             <  SRR4302534.2996471/94‑1 (MQ=60)

                                                   AAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAAC                                            >  SRR4302534.2253549/1‑94 (MQ=60)

                                                   AAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAAC                                            >  SRR4302534.5669359/1‑94 (MQ=60)

                                                    AGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACC                                           >  SRR4302534.6519015/1‑94 (MQ=60)

                                                    AGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACC                                           >  SRR4302534.5677892/1‑94 (MQ=60)

                                                     GAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCA                                          <  SRR4302534.1747294/94‑1 (MQ=60)

                                                      AAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCAC                                         <  SRR4302534.6184550/94‑1 (MQ=60)

                                                      AAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCAC                                         >  SRR4302534.3076362/1‑94 (MQ=60)

                                                       AAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACA                                        >  SRR4302534.516407/1‑94 (MQ=60)

                                                        AAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAA                                       <  SRR4302534.39973/94‑1 (MQ=60)

                                                        AAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAA                                       >  SRR4302534.400789/1‑94 (MQ=60)

                                                          GGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAAT                                     <  SRR4302534.4356554/94‑1 (MQ=60)

                                                           GCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATC                                    <  SRR4302534.5378038/94‑1 (MQ=60)

                                                           GCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATC                                    <  SRR4302534.5863288/94‑1 (MQ=60)

                                                            CGGATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCA                                   >  SRR4302534.5348095/1‑94 (MQ=60)

                                                              GATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGG                                 <  SRR4302534.4585438/94‑1 (MQ=60)

                                                               ATAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGG                                <  SRR4302534.6589947/94‑1 (MQ=60)

                                                                TAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGG                               <  SRR4302534.2999010/94‑1 (MQ=60)

                                                                TAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGG                               >  SRR4302534.4957556/1‑94 (MQ=60)

                                                                TAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGG                               >  SRR4302534.5660326/1‑94 (MQ=60)

                                                                TAAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGG                               <  SRR4302534.1927225/94‑1 (MQ=60)

                                                                AAAGCAAAAACCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGG                               <  SRR4302534.4851963/94‑1 (MQ=60)

                                                                 AAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGC                              <  SRR4302534.5906098/94‑1 (MQ=60)

                                                                 AAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGC                              >  SRR4302534.1197792/1‑94 (MQ=60)

                                                                 AAGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGC                              <  SRR4302534.5562647/94‑1 (MQ=60)

                                                                  AGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCT                             <  SRR4302534.294556/94‑1 (MQ=60)

                                                                  AGCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCT                             >  SRR4302534.4352443/1‑94 (MQ=60)

                                                                   GCAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTT                            <  SRR4302534.5612139/94‑1 (MQ=60)

                                                                    CAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTG                           >  SRR4302534.79670/1‑94 (MQ=60)

                                                                    CAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTG                           >  SRR4302534.5640955/1‑94 (MQ=60)

                                                                    CAAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTG                           <  SRR4302534.6034945/94‑1 (MQ=60)

                                                                     AAAAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGA                          >  SRR4302534.5230316/1‑94 (MQ=60)

                                                                       AAAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAAT                        >  SRR4302534.1656393/1‑94 (MQ=60)

                                                                       AAAGCCGCCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATAACTATACAACCACAAATCAGGGGCTTGAAT                        >  SRR4302534.1871653/1‑94 (MQ=60)

                                                                        AAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATC                       >  SRR4302534.5871650/1‑94 (MQ=60)

                                                                        AAGCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATC                       >  SRR4302534.4281830/1‑94 (MQ=60)

                                                                          accgtaagaGATATTGTGGTACTGGAAACCGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCT                     <  SRR4302534.4255084/85‑1 (MQ=60)

                                                                          GCCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCT                     >  SRR4302534.2144974/1‑94 (MQ=60)

                                                                           CCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTT                    <  SRR4302534.684726/94‑1 (MQ=60)

                                                                           CCGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTT                    <  SRR4302534.1111754/94‑1 (MQ=60)

                                                                            CGTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTA                   <  SRR4302534.2193411/94‑1 (MQ=60)

                                                                             GTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAG                  <  SRR4302534.1392244/94‑1 (MQ=60)

                                                                             GTCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAG                  <  SRR4302534.2632433/94‑1 (MQ=60)

                                                                              TCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGT                 <  SRR4302534.3188423/94‑1 (MQ=60)

                                                                              TCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGT                 <  SRR4302534.3564808/94‑1 (MQ=60)

                                                                              TCAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGT                 >  SRR4302534.6361110/1‑94 (MQ=60)

                                                                               CAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTA                <  SRR4302534.3024162/94‑1 (MQ=60)

                                                                               CAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTA                >  SRR4302534.1974179/1‑94 (MQ=60)

                                                                               CAGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTA                >  SRR4302534.1863786/1‑94 (MQ=60)

                                                                                AGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAG               >  SRR4302534.5438785/1‑94 (MQ=60)

                                                                                AGCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAG               >  SRR4302534.2938833/1‑94 (MQ=60)

                                                                                 GCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCACCCACAAATCAGGGGCTTGAATCCTTAGTAGA              <  SRR4302534.2513244/94‑1 (MQ=60)

                                                                                 GCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGA              >  SRR4302534.4731964/1‑94 (MQ=60)

                                                                                 GCGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGA              <  SRR4302534.3485030/94‑1 (MQ=60)

                                                                                  CGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAA             >  SRR4302534.4600939/1‑94 (MQ=60)

                                                                                  CGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAA             <  SRR4302534.6160004/94‑1 (MQ=60)

                                                                                  CGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAA             <  SRR4302534.490654/94‑1 (MQ=60)

                                                                                  CGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAA             >  SRR4302534.3055901/1‑94 (MQ=60)

                                                                                  CGATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAA             <  SRR4302534.1663/94‑1 (MQ=60)

                                                                                   GATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAG            >  SRR4302534.253527/1‑94 (MQ=60)

                                                                                   GATATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAG            <  SRR4302534.2677263/94‑1 (MQ=60)

                                                                                      ATTGTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGC         >  SRR4302534.3251533/1‑94 (MQ=60)

                                                                                         GTGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGA      >  SRR4302534.3457936/1‑94 (MQ=60)

                                                                                          TGGTGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGAC     >  SRR4302534.1710111/1‑94 (MQ=60)

                                                                                             TGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGACACT  <  SRR4302534.1089680/94‑1 (MQ=60)

TCATTATCGGCGTACTTGCCAGCCTGGTGGTTCCTAACCTAATGGGCAATAAAGAAAAGGCGGATAAGCAAAAAGCCGTCAGCGATATTGTGGCGCTGGAAAACGCCCTTGATATGTACAAACTCGACAATCATCACTATCCAACCACAAATCAGGGGCTTGAATCCTTAGTAGAAGCGCCGACACT  >  NC_000913/3458718‑3458904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`