Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,537,405 |
+GC |
intergenic (+61/‑394) |
b3407 → / → feoA |
hypothetical protein/ferrous iron transport protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,537,404 | 1 | . | C | 99.5%
| 708.4
/ ‑3.8
| 207 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (94/112); total (94/113) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 |
| * | NC_000913 | 3,537,404 | 2 | . | G | 99.5%
| 701.8
/ ‑3.8
| 206 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (93/112); total (93/113) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.93e-01 |
Only 100 of 228 total aligned reads displayed.
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
||
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑c > 1:3109640/1‑93 (MQ=255)
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑c < 2:4763745/93‑1 (MQ=255)
gcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑cg < 1:3046300/93‑2 (MQ=255)
gcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑cg > 1:1458736/1‑92 (MQ=255)
tGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑cgcc > 1:124998/1‑90 (MQ=255)
ggcggcggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑cgccg > 2:1929073/1‑89 (MQ=255)
ggcggcggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑cgccg < 1:2095403/93‑5 (MQ=255)
ggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTg > 2:3746183/1‑93 (MQ=38)
cAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGc < 2:2891767/93‑1 (MQ=38)
aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCa > 2:1718745/1‑93 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaa > 2:1029538/1‑93 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaa < 2:5704027/93‑1 (MQ=37)
tGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaac > 1:5470616/1‑93 (MQ=37)
tGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaac > 2:2093979/1‑93 (MQ=37)
gCAAAAAACGTTAAACGCCCGTCCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaacgaa < 2:1411044/93‑1 (MQ=37)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAACTCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaacgaa < 2:3430750/93‑1 (MQ=37)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaacgaa < 1:6204638/93‑1 (MQ=37)
cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaacgaac < 2:4244680/93‑1 (MQ=38)
aaaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaacgaac < 2:5961112/92‑1 (MQ=37)
aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCaacgaacg < 1:2640340/93‑1 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGc > 1:5175749/1‑93 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGc > 1:5907412/1‑93 (MQ=37)
aaaaCGTTAAACGCCCGTCCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGcc < 1:5114533/93‑1 (MQ=37)
aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGcc < 2:6150385/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCt < 1:4652413/93‑1 (MQ=37)
aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCtt > 1:6027643/1‑93 (MQ=37)
aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCtt < 1:4760232/93‑1 (MQ=37)
ttAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCt < 2:44494/93‑1 (MQ=37)
ttAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCt < 1:1710516/93‑1 (MQ=37)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACa > 2:2460032/1‑93 (MQ=38)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACa < 2:1566221/93‑1 (MQ=37)
cGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACAt < 1:1104389/93‑1 (MQ=37)
cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaa > 1:4371759/1‑93 (MQ=38)
cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaa < 2:5928501/93‑1 (MQ=37)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa > 1:5193074/1‑93 (MQ=38)
cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaaa > 1:1016234/1‑93 (MQ=38)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg < 2:4794862/93‑1 (MQ=37)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg < 2:3036817/93‑1 (MQ=37)
tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt < 1:4673244/93‑1 (MQ=37)
cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc > 1:3891962/1‑93 (MQ=38)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 2:657145/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 1:1004822/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 2:4290371/93‑1 (MQ=37)
ggCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg < 2:5290184/93‑1 (MQ=37)
ggCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg < 2:1764763/93‑1 (MQ=37)
gCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg < 1:5034301/93‑1 (MQ=37)
ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGga > 1:1938630/1‑93 (MQ=38)
ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGga < 1:2848171/93‑1 (MQ=37)
cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCACATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgag < 2:4532772/93‑1 (MQ=37)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa > 1:934712/1‑93 (MQ=38)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 1:2487332/93‑1 (MQ=37)
cGGTTCGAATTTGCACGAAATCGTAGGGCAAATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAat < 1:4782624/93‑1 (MQ=37)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata > 2:3876827/1‑93 (MQ=38)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTC‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata < 1:5737597/93‑1 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 1:3716714/1‑93 (MQ=38)
ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc > 1:3619791/1‑93 (MQ=37)
ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc > 2:5849905/1‑93 (MQ=38)
ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc < 1:1486962/93‑1 (MQ=37)
tCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct > 1:1376656/1‑93 (MQ=38)
cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtctc < 1:6374571/93‑1 (MQ=37)
cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtctc < 2:3247239/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCGCG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 1:4019082/93‑1 (MQ=38)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 2:5822606/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc > 2:2776963/1‑93 (MQ=38)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 2:3823460/1‑93 (MQ=38)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 2:4622797/1‑93 (MQ=38)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg > 2:5516652/1‑93 (MQ=38)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg < 1:5415579/93‑1 (MQ=37)
aTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCgg < 2:1797710/93‑1 (MQ=38)
aTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCgg > 1:2242395/1‑93 (MQ=38)
aTTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCgg > 1:4582995/1‑93 (MQ=38)
gCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt < 1:3455593/93‑1 (MQ=38)
gCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt < 2:2156495/93‑1 (MQ=38)
gCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt < 2:5201516/93‑1 (MQ=38)
gCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 1:1734846/1‑93 (MQ=38)
gCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt < 1:885284/93‑1 (MQ=38)
gCACGAAATCGTAGGCCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt < 1:2959127/93‑1 (MQ=37)
cACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttt < 1:1019429/93‑1 (MQ=38)
aCGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt < 2:5632316/93‑1 (MQ=38)
aCGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt < 2:3986844/93‑1 (MQ=38)
cGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttttt < 2:4104115/93‑1 (MQ=38)
aaaTCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAt < 2:3951970/93‑1 (MQ=38)
aaaTCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAt > 1:5594604/1‑93 (MQ=38)
aaTCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCACTtttttt > 1:38492/1‑93 (MQ=37)
tCGTAGGGCAGATAAGGCGTC‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc < 2:10853/93‑1 (MQ=38)
gTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac < 1:4270920/93‑1 (MQ=38)
tAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca < 2:2856225/93‑1 (MQ=38)
aGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGTCGGAGTATATCTCCGGCATTTTTATTCCACAg > 2:327575/1‑93 (MQ=37)
aGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAg > 2:505397/1‑93 (MQ=38)
gggCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc > 2:3623265/1‑93 (MQ=38)
ggCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGcc < 2:5597206/93‑1 (MQ=38)
gCAGATAAGGCTTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa < 2:5398467/93‑1 (MQ=38)
gCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGGATATCTCCGGCATTTTTATTCCACAGCCa > 2:1472803/1‑93 (MQ=38)
gCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa < 1:2165695/93‑1 (MQ=38)
aGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa > 2:5125104/1‑93 (MQ=38)
gATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc < 1:3266140/93‑1 (MQ=38)
aTAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACt < 1:563473/93‑1 (MQ=38)
aGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat < 1:1660735/93‑1 (MQ=39)
aGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat > 1:5786614/1‑93 (MQ=255)
ggCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCata < 1:778903/93‑1 (MQ=39)
||
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537312‑3537498
|
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑C < SRR4302534.1731419/94‑1 (MQ=60)
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑C > SRR4302534.3191411/1‑94 (MQ=60)
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑C‑‑G > SRR4302534.1497103/1‑94 (MQ=60)
GCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgc < SRR4302534.3126198/94‑3 (MQ=60)
CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgcc > SRR4302534.128300/1‑91 (MQ=60)
TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccg > SRR4302534.1266300/1‑90 (MQ=60)
TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccg > SRR4302534.1893950/1‑90 (MQ=60)
GGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccgc < SRR4302534.2150372/94‑6 (MQ=60)
GCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCA > SRR4302534.3036133/1‑94 (MQ=60)
GGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATC > SRR4302534.2241886/1‑94 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTG < SRR4302534.6328837/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTG < SRR4302534.974980/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTG < SRR4302534.1868895/94‑1 (MQ=60)
GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGG > SRR4302534.5819842/1‑94 (MQ=60)
GGCAATGGACAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGG < SRR4302534.4819548/94‑1 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAAC > SRR4302534.5618099/1‑94 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAAC < SRR4302534.1076073/94‑1 (MQ=60)
TGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACG < SRR4302534.5485961/94‑1 (MQ=60)
GGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGA > SRR4302534.5710050/1‑94 (MQ=60)
GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAA < SRR4302534.1588745/94‑1 (MQ=60)
GCAAAAAACTTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAAC < SRR4302534.1604164/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAAC < SRR4302534.6373350/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAAC < SRR4302534.4213102/94‑1 (MQ=60)
CAAAAAACTTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACG < SRR4302534.6339157/94‑1 (MQ=60)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACTAAATCGTAGGGAAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACG < SRR4302534.3787377/94‑1 (MQ=60)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATCAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACG > SRR4302534.4488405/1‑94 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGC < SRR4302534.2710171/94‑1 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGC > SRR4302534.5315217/1‑94 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGC > SRR4302534.6067816/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCC > SRR4302534.5316155/1‑94 (MQ=60)
AAAACGTTAAACGCCCGTCCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCT < SRR4302534.5252558/94‑1 (MQ=60)
aaccgtaaacccCCCGTATTGGCTTACGGTTGGAATTTGCACGAAATCGTAGGCCAGATAAGGCGTC‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTT < SRR4302534.5915231/82‑1 (MQ=29)
AAACGTTAACCGCCCGTCCTGGCCTACGGTTCAAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTT < SRR4302534.1512245/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAATGAACGCCTT < SRR4302534.6451550/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTT < SRR4302534.3309438/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTT < SRR4302534.5170671/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTT < SRR4302534.3120502/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTT > SRR4302534.6191438/1‑94 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTT < SRR4302534.4778714/94‑1 (MQ=60)
agcgtgaacccCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGCCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTG < SRR4302534.2841325/83‑1 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTG < SRR4302534.4889489/94‑1 (MQ=60)
GTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCT < SRR4302534.5098290/94‑1 (MQ=60)
TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTG < SRR4302534.1754963/94‑1 (MQ=60)
TAAACTCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGA < SRR4302534.5587465/94‑1 (MQ=60)
TAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGA > SRR4302534.2104838/1‑94 (MQ=60)
AAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGAC < SRR4302534.1937507/94‑1 (MQ=60)
AAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGAC > SRR4302534.2380429/1‑94 (MQ=60)
AAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGAC > SRR4302534.128878/1‑94 (MQ=60)
CGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATA < SRR4302534.1133173/94‑1 (MQ=60)
GCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAA > SRR4302534.4500182/1‑94 (MQ=60)
GCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAA > SRR4302534.4489567/1‑94 (MQ=60)
CCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAA > SRR4302534.5333083/1‑94 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAA > SRR4302534.1042391/1‑94 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAA > SRR4302534.1434082/1‑94 (MQ=60)
CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG > SRR4302534.812057/1‑94 (MQ=60)
GTACTGGCCTACGGTTCGAACTTGCACGAAATCGGAGGGCAGAGAAGGCGTT‑‑CA‑‑CGACGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGG > SRR4302534.6487633/1‑94 (MQ=60)
GTACTGGCCTACGGTACGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCGCG‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGCCATAAAAGT < SRR4302534.6174624/94‑1 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG < SRR4302534.4800095/94‑1 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG > SRR4302534.103266/1‑94 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG > SRR4302534.958548/1‑94 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGAT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG > SRR4302534.2598768/1‑94 (MQ=60)
ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC > SRR4302534.3996438/1‑94 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG < SRR4302534.1030596/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG > SRR4302534.5978343/1‑94 (MQ=60)
GCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGA > SRR4302534.1989323/1‑94 (MQ=60)
GCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGA < SRR4302534.5170286/94‑1 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAG > SRR4302534.2773473/1‑94 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAG < SRR4302534.2922992/94‑1 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCTGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAAA > SRR4302534.104645/1‑94 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA > SRR4302534.5286806/1‑94 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA < SRR4302534.4107321/94‑1 (MQ=60)
TACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA > SRR4302534.958493/1‑94 (MQ=60)
ACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAAT < SRR4302534.2553411/94‑1 (MQ=60)
ACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAAT > SRR4302534.2158318/1‑94 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAAATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA < SRR4302534.4912476/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT > SRR4302534.828481/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT > SRR4302534.3816640/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTC‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT < SRR4302534.5893087/94‑1 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC > SRR4302534.3902831/1‑94 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC > SRR4302534.3717105/1‑94 (MQ=60)
TTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCT < SRR4302534.1526077/94‑1 (MQ=60)
TTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCT > SRR4302534.1412928/1‑94 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC < SRR4302534.6546709/94‑1 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC > SRR4302534.4877663/1‑94 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCGCG‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302534.4126827/94‑1 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302534.3778870/94‑1 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302534.4756530/94‑1 (MQ=60)
GAATTTGCACAAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302534.2276848/94‑1 (MQ=60)
AATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGG > SRR4302534.2301815/1‑94 (MQ=60)
AATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGG > SRR4302534.4707334/1‑94 (MQ=60)
AATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGG < SRR4302534.5561260/94‑1 (MQ=60)
ATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGC > SRR4302534.3854207/1‑94 (MQ=60)
TGGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAT < SRR4302534.3620371/94‑1 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT > SRR4302534.1779901/1‑94 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT < SRR4302534.2941848/94‑1 (MQ=60)
GCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTT < SRR4302534.3548478/94‑1 (MQ=60)
GCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTT < SRR4302534.907685/94‑1 (MQ=60)
GCACGAAATCGTAGGCCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTT < SRR4302534.3036668/94‑1 (MQ=60)
tgccaaaaaccggagggaagatacggcgtccacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT < SRR4302534.3461794/60‑1 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTT < SRR4302534.1045673/94‑1 (MQ=60)
ccacgaaatcgtggggaaaaaagggcgttcacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTT < SRR4302534.916/61‑1 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT > SRR4302534.4780487/1‑94 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT < SRR4302534.6617672/94‑1 (MQ=60)
GAAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT > SRR4302534.5745867/1‑94 (MQ=60)
AAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATT < SRR4302534.3001203/94‑1 (MQ=60)
AAATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCACTTTTTTT > SRR4302534.39527/1‑94 (MQ=60)
AATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTC > SRR4302534.3500530/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC < SRR4302534.4898573/94‑1 (MQ=60)
TGGTAGGGAAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCA < SRR4302534.5599639/94‑1 (MQ=60)
TCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCA < SRR4302534.4390007/94‑1 (MQ=60)
TCGTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCA < SRR4302534.575055/94‑1 (MQ=60)
GTAGGGCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302534.4386374/94‑1 (MQ=60)
GCCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCA < SRR4302534.354285/94‑1 (MQ=60)
GCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAA < SRR4302534.5909363/94‑1 (MQ=60)
GCAGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAA < SRR4302534.2222900/94‑1 (MQ=60)
AGATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC > SRR4302534.2424856/1‑94 (MQ=60)
GATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT > SRR4302534.1778181/1‑94 (MQ=60)
GATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302534.3353128/94‑1 (MQ=60)
GATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302534.581324/94‑1 (MQ=60)
ATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC < SRR4302534.5223353/94‑1 (MQ=60)
ATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC < SRR4302534.577328/94‑1 (MQ=60)
ATAAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302534.6256195/1‑94 (MQ=60)
AAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGgggaatttttccgcatttttttttctacaccaaaaccaa > SRR4302534.1139718/1‑55 (MQ=60)
AAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT > SRR4302534.6145515/1‑94 (MQ=60)
AAGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT > SRR4302534.5943584/1‑94 (MQ=60)
AGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA < SRR4302534.3171819/94‑1 (MQ=60)
AGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA < SRR4302534.3970500/94‑1 (MQ=60)
AGGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA < SRR4302534.1703994/94‑1 (MQ=60)
GGCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA < SRR4302534.798322/94‑1 (MQ=60)
GCGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAAT < SRR4302534.2232124/94‑1 (MQ=60)
CGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCATAGCCAAACTCATAATA < SRR4302534.2354647/94‑1 (MQ=60)
CGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA > SRR4302534.2511194/1‑94 (MQ=60)
CGTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA > SRR4302534.3286059/1‑94 (MQ=60)
GTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302534.2239668/1‑94 (MQ=60)
GTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302534.3677094/94‑1 (MQ=60)
GTT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302534.663145/94‑1 (MQ=60)
TT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGGCGGAGGATATTTCCGGCATTTTTATTCCACAACCAAACTCATAATATA > SRR4302534.3516584/1‑94 (MQ=60)
TT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCGACAGCCAAACTCATAATATA < SRR4302534.6490174/94‑1 (MQ=60)
TT‑‑CACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302534.2909205/94‑1 (MQ=60)
tacacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302534.6606826/88‑1 (MQ=60)
tcacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT < SRR4302534.1256988/89‑1 (MQ=60)
tcacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT < SRR4302534.5241423/89‑1 (MQ=60)
cacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT > SRR4302534.2165778/5‑94 (MQ=60)
cacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT > SRR4302534.976486/5‑94 (MQ=60)
cacgC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT > SRR4302534.4362091/5‑94 (MQ=60)
CG‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302534.1516080/94‑1 (MQ=60)
CG‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC > SRR4302534.959857/1‑94 (MQ=60)
CG‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302534.2064674/94‑1 (MQ=60)
G‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302534.1384988/94‑1 (MQ=60)
G‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302534.1727475/94‑1 (MQ=60)
G‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG > SRR4302534.4316275/1‑94 (MQ=60)
G‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGACAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302534.2823862/94‑1 (MQ=60)
C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG < SRR4302534.6631109/94‑1 (MQ=60)
C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG < SRR4302534.4488011/94‑1 (MQ=60)
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GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537312‑3537498
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
