Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,866,718	T→C	A74A (GCA→GCG)	yidR ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,866,718	0	T	C	100.0%	823.7 / NA	238	A74A (GCA→GCG)	yidR	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/102); total (136/102)

Only 100 of 255 total aligned reads displayed.

GTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGTGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCAGA  >  NC_000913/3866628‑3866807

gTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTgcgc                                                                                         >  2:3786778/1‑93 (MQ=255)

  cGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGGCACCACGCCGACGTgcgcgc                                                                                       >  2:287972/1‑93 (MQ=255)

   gTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGcc                                                                                      >  2:4517886/1‑93 (MQ=255)

   gTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGcc                                                                                      >  1:2009412/1‑93 (MQ=255)

   gTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGcc                                                                                      >  2:3314352/1‑93 (MQ=255)

    tAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGccc                                                                                     <  1:5997754/93‑1 (MQ=255)

    tAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGccc                                                                                     <  1:5253955/93‑1 (MQ=255)

     aaTGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCt                                                                                    >  1:6149488/1‑93 (MQ=255)

     aaTGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCt                                                                                    <  1:6390918/93‑1 (MQ=255)

      aTGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGccccg                                                                                   >  1:3290625/1‑91 (MQ=255)

      aTGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCtg                                                                                   >  2:4089663/1‑93 (MQ=255)

      aTGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCtg                                                                                   >  1:3093388/1‑93 (MQ=255)

        gCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCtgtg                                                                                 >  1:2305948/1‑93 (MQ=255)

         ccATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCtgtgc                                                                                >  1:1130664/1‑92 (MQ=255)

         ccATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGa                                                                                <  1:4058499/93‑1 (MQ=255)

          cATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGAc                                                                               <  1:803192/93‑1 (MQ=255)

          cATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGAc                                                                               >  2:6324600/1‑93 (MQ=255)

           aTGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGAcg                                                                              <  1:1565060/93‑1 (MQ=255)

              tttCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGAcgcgc                                                                           <  2:4632421/93‑1 (MQ=255)

                 catcaGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCgat                                                                        >  2:1916661/1‑93 (MQ=255)

                 catcaGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCgat                                                                        >  1:4555808/1‑93 (MQ=255)

                   tcaGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCgatag                                                                      >  1:4929497/1‑93 (MQ=255)

                   tcaGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCgatag                                                                      >  2:3654188/1‑93 (MQ=255)

                    caGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCgataga                                                                     <  2:4244199/93‑1 (MQ=255)

                     aGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCgatagat                                                                    >  2:1385010/1‑93 (MQ=255)

                     aGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCgatagat                                                                    <  1:6237656/93‑1 (MQ=255)

                       gATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATaa                                                                  >  1:879088/1‑93 (MQ=255)

                         ttttCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATCGATAacc                                                                >  2:519757/1‑93 (MQ=255)

                         ttttCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacc                                                                >  2:2144843/1‑93 (MQ=255)

                          tttCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacct                                                               <  1:4211250/93‑1 (MQ=255)

                          tttCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacct                                                               <  2:2656786/93‑1 (MQ=255)

                           ttCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacctc                                                              >  1:552777/1‑93 (MQ=255)

                            tCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacctca                                                             >  1:4330577/1‑92 (MQ=255)

                             ccGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacctcga                                                            >  1:5651786/1‑93 (MQ=255)

                              cGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacctcgac                                                           >  2:2325228/1‑93 (MQ=255)

                                  ccGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacctcgacctcg                                                       <  2:668358/93‑1 (MQ=255)

                                  ccGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacctcgacctcg                                                       >  1:1459753/1‑93 (MQ=255)

                                  ccGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAacctcgacctcg                                                       >  2:4994527/1‑93 (MQ=255)

                                   cGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGc                                                      <  1:2758515/93‑1 (MQ=255)

                                    gTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGcc                                                     <  2:6392124/93‑1 (MQ=255)

                                     tGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCg                                                    <  2:1971558/93‑1 (MQ=255)

                                      ggATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCgg                                                   <  2:2204704/93‑1 (MQ=255)

                                      ggATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCgg                                                   <  1:1070727/93‑1 (MQ=255)

                                       gATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGt                                                  <  1:3887160/93‑1 (MQ=255)

                                       gATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGt                                                  >  2:5431081/1‑93 (MQ=255)

                                          gAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATg                                               >  1:4983298/1‑93 (MQ=255)

                                          gAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATg                                               >  2:2650532/1‑93 (MQ=255)

                                           aaaaCATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATgg                                              >  2:1511116/1‑93 (MQ=255)

                                            aaaCATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGa                                             >  2:1167891/1‑93 (MQ=255)

                                            aaaCATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGa                                             >  1:373323/1‑93 (MQ=255)

                                             aaCATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGat                                            <  1:5442903/93‑1 (MQ=255)

                                             aaCATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGat                                            <  1:3974430/93‑1 (MQ=255)

                                             aaCATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGat                                            >  2:719028/1‑93 (MQ=255)

                                              aCATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGata                                           <  2:6239654/93‑1 (MQ=255)

                                               cATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGatat                                          >  2:4937552/1‑93 (MQ=255)

                                               cATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGatat                                          <  2:5782044/93‑1 (MQ=255)

                                                 tatTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTc                                        >  2:2579412/1‑93 (MQ=255)

                                                  atTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTca                                       <  2:1005183/93‑1 (MQ=255)

                                                       tctGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGc                                  >  1:2940067/1‑93 (MQ=255)

                                                       tctGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGc                                  >  2:532955/1‑93 (MQ=255)

                                                       tctGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGc                                  <  2:2530799/93‑1 (MQ=255)

                                                       tctGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGc                                  >  2:4366686/1‑93 (MQ=255)

                                                        ctGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCt                                 <  2:3608061/93‑1 (MQ=255)

                                                          gACTTCGGATGAACGGTCACGACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCa                               <  1:1229438/93‑1 (MQ=255)

                                                          gACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGAACTCGCCGGGATGGATATTCACACGCTCa                               >  1:3577465/1‑93 (MQ=255)

                                                            cTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAAt                             >  2:3407213/1‑93 (MQ=255)

                                                            cTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAAt                             >  1:1402694/1‑93 (MQ=255)

                                                            cTTCGGATAAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAAt                             >  1:906459/1‑93 (MQ=255)

                                                             ttCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATg                            <  1:2574495/93‑1 (MQ=255)

                                                             ttCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATg                            <  2:1603496/93‑1 (MQ=255)

                                                                ggATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGtc                         >  1:3748529/1‑93 (MQ=255)

                                                                 gATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGtct                        >  2:5646015/1‑93 (MQ=255)

                                                                 gATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGtct                        <  1:6191111/93‑1 (MQ=255)

                                                                  aTGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGtctc                       >  2:3505008/1‑93 (MQ=255)

                                                                   tGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGtctcc                      >  2:2389523/1‑92 (MQ=255)

                                                                   tGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCg                      <  2:1222414/93‑1 (MQ=255)

                                                                   tGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCg                      >  1:5319746/1‑93 (MQ=255)

                                                                    gAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGc                     <  2:4776082/93‑1 (MQ=255)

                                                                    gAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGc                     >  1:5057242/1‑93 (MQ=255)

                                                                     aaCGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGcc                    <  1:2868788/93‑1 (MQ=255)

                                                                      aCGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCg                   <  1:1028225/93‑1 (MQ=255)

                                                                       cGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCgg                  >  2:1304052/1‑93 (MQ=255)

                                                                        ggTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCgga                 >  2:2035545/1‑92 (MQ=255)

                                                                        ggTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGt                 >  2:3796110/1‑93 (MQ=255)

                                                                        ggTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGt                 >  2:3707599/1‑93 (MQ=255)

                                                                         gTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTa                >  1:4114594/1‑93 (MQ=255)

                                                                         gTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTa                >  1:367420/1‑93 (MQ=255)

                                                                         gTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTa                >  2:1694932/1‑93 (MQ=255)

                                                                         gTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTa                <  1:3181760/93‑1 (MQ=255)

                                                                          tCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTaa               >  1:4834309/1‑93 (MQ=255)

                                                                           caccacGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTaaa              <  1:1662045/93‑1 (MQ=255)

                                                                            accacGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAac             >  2:5532366/1‑93 (MQ=255)

                                                                            accacGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAac             <  1:2087277/93‑1 (MQ=255)

                                                                              cacGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAacga           <  1:5366331/93‑1 (MQ=255)

                                                                              cacGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAacga           >  2:840982/1‑93 (MQ=255)

                                                                                cGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGGAAacgacg         >  1:5754543/1‑93 (MQ=255)

                                                                                 gCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGAcgc        <  1:4501269/93‑1 (MQ=255)

                                                                                    gACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGcc     <  1:726397/93‑1 (MQ=255)

                                                                                    gACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGcc     >  1:4667322/1‑93 (MQ=255)

                                                                                     aCGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCa    >  2:6196223/1‑93 (MQ=255)

GTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGTGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCAGA  >  NC_000913/3866628‑3866807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGTGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCAGAA  >  NC_000913/3866625‑3866808

GAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGC                                                                                            >  SRR4302534.1680959/1‑94 (MQ=60)

GAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGC                                                                                            <  SRR4302534.2377084/94‑1 (MQ=60)

GAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGC                                                                                            >  SRR4302534.6625069/1‑94 (MQ=60)

GAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGC                                                                                            <  SRR4302534.2763404/94‑1 (MQ=60)

 AAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCG                                                                                           >  SRR4302534.3700731/1‑94 (MQ=60)

 AAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCG                                                                                           >  SRR4302534.3664899/1‑94 (MQ=60)

 AAGACGTAATGCCATGTTTAATCAGGATTTTGCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTTACCACGCCGACGTGCG                                                                                           >  SRR4302534.5449304/1‑94 (MQ=60)

     CGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCC                                                                                       >  SRR4302534.2061992/1‑94 (MQ=60)

     CGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGAC                                                                                       >  SRR4302534.4519987/1‑94 (MQ=60)

      GTAATGCCATGTTTCATCAGGAATTTCCGGGCCGTGGCTGAAAACAGATTTCTCTGACTTCGGATGAACGGTCACAACGCCGACGTGCGCGCCC                                                                                      >  SRR4302534.830149/1‑94 (MQ=60)

      CTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCC                                                                                      <  SRR4302534.3823059/94‑1 (MQ=60)

       TAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCT                                                                                     <  SRR4302534.2875168/94‑1 (MQ=60)

       TAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCT                                                                                     >  SRR4302534.6316764/1‑94 (MQ=60)

       TAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCT                                                                                     <  SRR4302534.6160692/94‑1 (MQ=60)

       TAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCT                                                                                     <  SRR4302534.5395933/94‑1 (MQ=60)

        AATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTG                                                                                    >  SRR4302534.3174757/1‑94 (MQ=60)

        AATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTG                                                                                    <  SRR4302534.6563537/94‑1 (MQ=60)

        AATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCCG                                                                                    >  SRR4302534.3378356/1‑94 (MQ=60)

          TGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTG                                                                                  <  SRR4302534.4194918/94‑1 (MQ=60)

          TGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTG                                                                                  >  SRR4302534.2367159/1‑94 (MQ=60)

          TGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTG                                                                                  <  SRR4302534.1082838/94‑1 (MQ=60)

          TGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTG                                                                                  <  SRR4302534.1304369/94‑1 (MQ=60)

          TACCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTG                                                                                  >  SRR4302534.622471/1‑94 (MQ=60)

           GCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGC                                                                                 >  SRR4302534.1160216/1‑94 (MQ=60)

            CCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGAC                                                                                <  SRR4302534.4167358/94‑1 (MQ=60)

             CATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACG                                                                               <  SRR4302534.823367/94‑1 (MQ=60)

              ATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGC                                                                              <  SRR4302534.1606020/94‑1 (MQ=60)

                GTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGC                                                                            <  SRR4302534.235703/94‑1 (MQ=60)

                  TTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGA                                                                          >  SRR4302534.2402865/1‑94 (MQ=60)

                  TTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGA                                                                          <  SRR4302534.3367815/94‑1 (MQ=60)

                   TCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGAT                                                                         <  SRR4302534.5441150/94‑1 (MQ=60)

                   TCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGAT                                                                         >  SRR4302534.4679322/1‑94 (MQ=60)

                   TCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGAT                                                                         >  SRR4302534.480638/1‑94 (MQ=60)

                   TCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGAT                                                                         >  SRR4302534.3870084/1‑94 (MQ=60)

                    CATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATA                                                                        >  SRR4302534.5531254/1‑94 (MQ=60)

                     ATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAG                                                                       >  SRR4302534.5063103/1‑94 (MQ=60)

                       CAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGAT                                                                     <  SRR4302534.3007892/94‑1 (MQ=60)

                        AGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATA                                                                    <  SRR4302534.6406944/94‑1 (MQ=60)

                        AGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATA                                                                    <  SRR4302534.508831/94‑1 (MQ=60)

                         GGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAA                                                                   >  SRR4302534.901318/1‑94 (MQ=60)

                           ATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACC                                                                 >  SRR4302534.1441570/1‑94 (MQ=60)

                            TTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCT                                                                <  SRR4302534.5723789/94‑1 (MQ=60)

                             TTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTC                                                               >  SRR4302534.566400/1‑94 (MQ=60)

                             TTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTC                                                               <  SRR4302534.4324855/94‑1 (MQ=60)

                             TTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTC                                                               <  SRR4302534.4722810/94‑1 (MQ=60)

                              TTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCG                                                              <  SRR4302534.6441525/94‑1 (MQ=60)

                              TTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCA                                                              >  SRR4302534.4447692/1‑94 (MQ=60)

                               TCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGA                                                             >  SRR4302534.5804762/1‑94 (MQ=60)

                                CCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCCGTGGCGCGCGATAGATAAACTCCAC                                                            >  SRR4302534.4558371/1‑94 (MQ=60)

                                 CGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACC                                                           >  SRR4302534.4832905/1‑94 (MQ=60)

                                 CGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACC                                                           >  SRR4302534.4229006/1‑94 (MQ=60)

                                  GGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCT                                                          <  SRR4302534.3818190/94‑1 (MQ=60)

                                  GGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCT                                                          <  SRR4302534.4653585/94‑1 (MQ=60)

                                  GGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCT                                                          <  SRR4302534.4042202/94‑1 (MQ=60)

                                    GCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCG                                                        >  SRR4302534.1498144/1‑94 (MQ=60)

                                    GCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCCACCTCG                                                        >  SRR4302534.5472069/1‑94 (MQ=60)

                                      CGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCC                                                      <  SRR4302534.2831176/94‑1 (MQ=60)

                                      CGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCC                                                      <  SRR4302534.922011/94‑1 (MQ=60)

                                        TGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGG                                                    >  SRR4302534.251351/1‑94 (MQ=60)

                                         GGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGT                                                   >  SRR4302534.2080762/1‑94 (MQ=60)

                                         GGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGT                                                   <  SRR4302534.1098502/94‑1 (MQ=60)

                                          GATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTA                                                  >  SRR4302534.6096356/1‑94 (MQ=60)

                                          GATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTA                                                  <  SRR4302534.3991508/94‑1 (MQ=60)

                                           ATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTAT                                                 >  SRR4302534.3520949/1‑94 (MQ=60)

                                            TGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATG                                                >  SRR4302534.5118159/1‑94 (MQ=60)

                                            TGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATG                                                <  SRR4302534.3739202/94‑1 (MQ=60)

                                            TGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATG                                                <  SRR4302534.6052976/94‑1 (MQ=60)

                                             GAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGG                                               >  SRR4302534.6365386/1‑94 (MQ=60)

                                             GAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGGATGG                                               >  SRR4302534.3904461/1‑94 (MQ=60)

                                             GAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCCGTGACGCGCGATAGATAAACTCGACCTCGCCGGGATGG                                               >  SRR4302534.5590027/1‑94 (MQ=60)

                                              AAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGA                                              >  SRR4302534.4104879/1‑94 (MQ=60)

                                              AAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGA                                              >  SRR4302534.382856/1‑94 (MQ=60)

                                              AAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGA                                              >  SRR4302534.3846479/1‑94 (MQ=60)

                                                AACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGTCGGTATGGGTA                                            >  SRR4302534.6547723/1‑94 (MQ=60)

                                                AACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATA                                            <  SRR4302534.4080802/94‑1 (MQ=60)

                                                AACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATA                                            >  SRR4302534.819692/1‑94 (MQ=60)

                                                AACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATA                                            <  SRR4302534.5589523/94‑1 (MQ=60)

                                                   ATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTC                                         >  SRR4302534.6339233/1‑94 (MQ=60)

                                                       TTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACAC                                     <  SRR4302534.927270/94‑1 (MQ=60)

                                                        TCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACG                                    <  SRR4302534.1530392/94‑1 (MQ=60)

                                                        TCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACA                                    <  SRR4302534.27358/94‑1 (MQ=60)

                                                         CTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGC                                   >  SRR4302534.3017220/1‑94 (MQ=60)

                                                         CTCTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGC                                   >  SRR4302534.3362750/1‑94 (MQ=60)

                                                           CTGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAAACTCGACCCCGCCCGGCTGGATAATCACACGCTC                                 >  SRR4302534.1316979/1‑94 (MQ=60)

                                                            TGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCA                                <  SRR4302534.5126716/94‑1 (MQ=60)

                                                            TGACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGAACTCGCCGGGATGGATATTCACACGCTCA                                >  SRR4302534.3673688/1‑94 (MQ=60)

                                                             GACTTCGGATGAACGGTCACGACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAA                               <  SRR4302534.1261807/94‑1 (MQ=60)

                                                              ACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAAT                              >  SRR4302534.1439580/1‑94 (MQ=60)

                                                              ACTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAAT                              >  SRR4302534.6326897/1‑94 (MQ=60)

                                                              ACTTCGGATAAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAAT                              >  SRR4302534.929486/1‑94 (MQ=60)

                                                               CTTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATG                             >  SRR4302534.5074635/1‑94 (MQ=60)

                                                                TTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGG                            <  SRR4302534.2642700/94‑1 (MQ=60)

                                                                TTCGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGG                            <  SRR4302534.112715/94‑1 (MQ=60)

                                                                  CGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTC                          >  SRR4302534.1562377/1‑94 (MQ=60)

                                                                  CGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTC                          <  SRR4302534.5636110/94‑1 (MQ=60)

                                                                  CGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTC                          >  SRR4302534.3849218/1‑94 (MQ=60)

                                                                  CGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTC                          <  SRR4302534.1131273/94‑1 (MQ=60)

                                                                  CGGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCCCGACCTCGCCGGGATGGGTATTCACACGCTCCATGGTC                          >  SRR4302534.1194790/1‑94 (MQ=60)

                                                                   GGATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCT                         >  SRR4302534.935229/1‑94 (MQ=60)

                                                                    GATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTC                        <  SRR4302534.6359579/94‑1 (MQ=60)

                                                                     ATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCG                       >  SRR4302534.5463224/1‑94 (MQ=60)

                                                                     ATGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCG                       >  SRR4302534.1833230/1‑94 (MQ=60)

                                                                      TGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGC                      >  SRR4302534.5193842/1‑94 (MQ=60)

                                                                      TGAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGGATGGATATTCACACGCTCAATGGTCTCGC                      >  SRR4302534.1617367/1‑94 (MQ=60)

                                                                       GAACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCC                     >  SRR4302534.5899828/1‑94 (MQ=60)

                                                                        AACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCG                    <  SRR4302534.3020907/94‑1 (MQ=60)

                                                                        AACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCG                    <  SRR4302534.2944116/94‑1 (MQ=60)

                                                                        AACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCG                    >  SRR4302534.786482/1‑94 (MQ=60)

                                                                         ACGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGG                   <  SRR4302534.1054710/94‑1 (MQ=60)

                                                                          CGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGT                  <  SRR4302534.6627875/94‑1 (MQ=60)

                                                                          CGGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGT                  <  SRR4302534.5269366/94‑1 (MQ=60)

                                                                           GGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTA                 >  SRR4302534.376795/1‑94 (MQ=60)

                                                                           GGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTA                 >  SRR4302534.3750030/1‑94 (MQ=60)

                                                                           GGTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTA                 >  SRR4302534.4225293/1‑94 (MQ=60)

                                                                            GTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAA                <  SRR4302534.936996/94‑1 (MQ=60)

                                                                            GTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAA                <  SRR4302534.3265834/94‑1 (MQ=60)

                                                                            GTCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAA                >  SRR4302534.4965474/1‑94 (MQ=60)

                                                                             TCACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAA               <  SRR4302534.4311374/94‑1 (MQ=60)

                                                                              TACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAAaccctaactcgcccggatgggtattttcacgctccaagggctcgccggtaaaa              >  SRR4302534.5582487/1‑41 (MQ=60)

                                                                              CACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAAC              <  SRR4302534.1705324/94‑1 (MQ=60)

                                                                               ACCACGCCGACGTGCGCGCCCTGTGACGCGCGGTAGATAACCTCGACCTCGCCGGTATGGATATTCACAAGCTCAATTGGCTCGCCGGTgaaag             >  SRR4302534.4499861/1‑89 (MQ=60)

                                                                               ACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACG             >  SRR4302534.1823719/1‑94 (MQ=60)

                                                                               ACCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACG             <  SRR4302534.2141985/94‑1 (MQ=60)

                                                                                CCACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAAAGA            >  SRR4302534.4337086/1‑94 (MQ=60)

                                                                                 CACGCCGACGTGCGCGCGCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGAC           <  SRR4302534.522201/94‑1 (MQ=60)

                                                                                 CACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGAC           <  SRR4302534.5737166/94‑1 (MQ=60)

                                                                                 CACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGAC           >  SRR4302534.4104685/1‑94 (MQ=60)

                                                                                 CACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGAC           >  SRR4302534.3257357/1‑94 (MQ=60)

                                                                                 CACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGAC           <  SRR4302534.5510967/94‑1 (MQ=60)

                                                                                  CCGCCGACGTGCGCGCACTGTGACGCGCGATAGATACCCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACG          <  SRR4302534.4704903/94‑1 (MQ=60)

                                                                                  ACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACG          <  SRR4302534.545828/94‑1 (MQ=60)

                                                                                  ACGCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGGAAACGACG          >  SRR4302534.5910618/1‑94 (MQ=60)

                                                                                    GCCGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCG        <  SRR4302534.4623106/94‑1 (MQ=60)

                                                                                      CGACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCC      >  SRR4302534.4794033/1‑94 (MQ=60)

                                                                                       GACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCA     <  SRR4302534.744328/94‑1 (MQ=60)

                                                                                       GACGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCA     >  SRR4302534.5030632/1‑94 (MQ=60)

                                                                                         CGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCAGA   <  SRR4302534.2843642/94‑1 (MQ=60)

                                                                                         CGTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCAGA   >  SRR4302534.2254927/1‑94 (MQ=60)

                                                                                          GTGCGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCAGAA  <  SRR4302534.3046902/94‑1 (MQ=60)

GAAGTCGTAATGCCATGTTTCATCAGGATTTTCCGGGCCGTGGATGAAAACATATTTCTCTGACTTCGGATGAACGGTCACCACGCCGACGTGTGCGCCCTGTGACGCGCGATAGATAACCTCGACCTCGCCGGTATGGATATTCACACGCTCAATGGTCTCGCCGGTAAACGACGCGCCAGAA  >  NC_000913/3866625‑3866808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`