Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,987,822	2 bp→CG	coding (578‑579/963 nt)	hemC ←	porphobilinogen deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,987,822	0	G	C	100.0%	968.8 / NA	278	G193A (GGC→GCG)	hemC	porphobilinogen deaminase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (131/147); total (131/147)
*	NC_000913	3,987,823	0	C	G	100.0%	947.0 / NA	275	G193A (GGC→GCG)	hemC	porphobilinogen deaminase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (128/147); total (128/147)

Only 100 of 286 total aligned reads displayed.

AGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTT  >  NC_000913/3987736‑3987908

||

agcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACgcggcg                                                                                  >  2:184670/1‑93 (MQ=255)

 gcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGgcgc                                                                                 >  1:99233/1‑93 (MQ=255)

 gcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGgcgc                                                                                 <  1:101105/93‑1 (MQ=255)

 gcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGgcgc                                                                                 <  2:6382766/93‑1 (MQ=255)

    cgcgAGTGCGTGAATCATCAAGGCGGCATTCAATCCCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGaa                                                                              <  2:6190989/93‑1 (MQ=255)

     gcgAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAAt                                                                             >  2:5895672/1‑93 (MQ=255)

      cgAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATa                                                                            <  2:130872/93‑1 (MQ=255)

      cgAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATa                                                                            <  1:3297906/93‑1 (MQ=255)

      cgAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATa                                                                            <  2:5047052/93‑1 (MQ=255)

        aGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACg                                                                          >  2:5194893/1‑93 (MQ=255)

         gTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGt                                                                         >  1:1127054/1‑93 (MQ=255)

          tGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTg                                                                        >  2:4418726/1‑93 (MQ=255)

              tGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTc                                                                    >  1:2718681/1‑93 (MQ=255)

              tGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTc                                                                    <  1:3921692/93‑1 (MQ=255)

                   catcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGAc                                                               <  1:251366/93‑1 (MQ=255)

                   catcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGAc                                                               <  2:536503/93‑1 (MQ=255)

                   catcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGAc                                                               <  1:2844986/93‑1 (MQ=255)

                    atcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGAcc                                                              >  1:5400437/1‑93 (MQ=255)

                      caAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTa                                                            <  1:523343/93‑1 (MQ=255)

                       aaGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTaa                                                           >  2:5612751/1‑93 (MQ=255)

                       aaGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTaa                                                           <  1:4829671/93‑1 (MQ=255)

                        aGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTaaa                                                          <  2:5273630/93‑1 (MQ=255)

                           cggcATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACACCAGACCTAAACGt                                                       <  2:3925436/93‑1 (MQ=255)

                             gcATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGttt                                                     <  2:3480035/93‑1 (MQ=255)

                             gcATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGttt                                                     <  2:5732105/93‑1 (MQ=255)

                             gcATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGttt                                                     >  1:5815018/1‑93 (MQ=255)

                              cATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGtttt                                                    <  2:3248361/93‑1 (MQ=255)

                              cATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGtttt                                                    <  1:5935896/93‑1 (MQ=255)

                               aTTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTa                                                   <  2:3699538/93‑1 (MQ=255)

                               aTTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTa                                                   >  2:1213621/1‑93 (MQ=255)

                                 tCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATATGTGACTCCAGACCTAAACGTTTTAGt                                                 >  2:1988737/1‑93 (MQ=255)

                                 tCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGt                                                 >  1:2961250/1‑93 (MQ=255)

                                   caatcccACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTcc                                               <  1:1702193/89‑1 (MQ=255)

                                   aaTACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTcc                                               >  1:1776737/1‑93 (MQ=255)

                                    aTACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCg                                              >  2:933925/1‑93 (MQ=255)

                                    aTACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCg                                              >  1:4565452/1‑93 (MQ=255)

                                    aTACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCg                                              <  1:3071410/93‑1 (MQ=255)

                                     tACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCgg                                             >  1:5627380/1‑93 (MQ=255)

                                     tACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCgg                                             >  2:5827789/1‑93 (MQ=255)

                                      aCCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGc                                            <  2:2858096/93‑1 (MQ=255)

                                      aCCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGc                                            >  2:4989792/1‑93 (MQ=255)

                                       cccACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCt                                           >  2:3542929/1‑93 (MQ=255)

                                       cccACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCt                                           <  1:941062/93‑1 (MQ=255)

                                       cccACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGCCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCt                                           <  1:3716086/93‑1 (MQ=255)

                                         cACCGCCCCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAc                                         <  1:3159052/93‑1 (MQ=255)

                                         cACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAc                                         <  1:5976245/93‑1 (MQ=255)

                                         cACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAc                                         <  1:1290219/93‑1 (MQ=255)

                                         cACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAc                                         >  2:5523602/1‑93 (MQ=255)

                                         cACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAc                                         <  1:2149012/93‑1 (MQ=255)

                                         cACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAc                                         >  1:2370099/1‑93 (MQ=255)

                                          aCCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACg                                        <  1:3597061/93‑1 (MQ=255)

                                              cACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCaa                                    >  2:2921491/1‑93 (MQ=255)

                                               aCCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCATACCTAAACGTTTTAGTCCGGCTACGGCAAg                                   >  1:6221109/1‑93 (MQ=255)

                                                ccTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGa                                  <  1:4952827/93‑1 (MQ=255)

                                                ccTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGa                                  <  1:4138188/93‑1 (MQ=255)

                                                  ttGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAat                                >  2:6084442/1‑93 (MQ=255)

                                                  ttGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAat                                <  2:1966464/93‑1 (MQ=255)

                                                    gTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatga                              >  1:4278864/1‑93 (MQ=255)

                                                    gTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatga                              <  2:4552874/93‑1 (MQ=255)

                                                     tCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatgat                             <  2:1409154/93‑1 (MQ=255)

                                                     tCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatgat                             <  2:2109551/93‑1 (MQ=255)

                                                      ccTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatgatg                            <  2:4802350/93‑1 (MQ=255)

                                                      ccTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatgatg                            <  2:2228245/93‑1 (MQ=255)

                                                      ccTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatgatg                            <  1:1654461/93‑1 (MQ=255)

                                                      ccTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatgatg                            <  1:4411867/93‑1 (MQ=255)

                                                       cTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATgg                           >  2:2327835/1‑93 (MQ=255)

                                                        tACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCCAGAATGATGGc                          >  1:378133/1‑93 (MQ=255)

                                                         aCCGCCGGAAGAGAAACCTCGGGTAGCCACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCa                         <  2:1252528/93‑1 (MQ=255)

                                                          ccgccgGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCAt                        <  2:3962785/93‑1 (MQ=255)

                                                          ccgccgGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTGAGTCCGGCTACGGCAAGAATGATGGCAt                        <  2:4054119/93‑1 (MQ=255)

                                                           cgccgGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATc                       <  1:2638285/93‑1 (MQ=255)

                                                             ccgGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGt                     <  2:4376796/93‑1 (MQ=255)

                                                             ccgGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGt                     >  1:1178590/1‑93 (MQ=255)

                                                             ccgGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGt                     >  2:3151195/1‑93 (MQ=255)

                                                              cgGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTa                    >  2:6172001/1‑93 (MQ=255)

                                                               ggAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAt                   <  2:4171210/93‑1 (MQ=255)

                                                               ggAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAt                   <  2:3044960/93‑1 (MQ=255)

                                                               ggAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAt                   >  1:4715711/1‑93 (MQ=255)

                                                               ggAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAt                   >  2:2047959/1‑93 (MQ=255)

                                                               ggAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAt                   <  1:6414545/93‑1 (MQ=255)

                                                                gAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAtt                  >  1:5371946/1‑93 (MQ=255)

                                                                gAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAtt                  >  2:2608793/1‑93 (MQ=255)

                                                                gAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAtt                  >  1:5536780/1‑93 (MQ=255)

                                                                gAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAtt                  <  2:3769702/93‑1 (MQ=255)

                                                                 aaGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTc                 >  1:734341/1‑93 (MQ=255)

                                                                  agagAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCg                >  1:4524953/1‑93 (MQ=255)

                                                                      aaaTCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGt            <  2:4780849/93‑1 (MQ=255)

                                                                       aaTCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGtt           <  2:6266872/93‑1 (MQ=255)

                                                                        aTCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTa          <  1:3688271/93‑1 (MQ=255)

                                                                         tctcGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTAt         <  2:5444688/93‑1 (MQ=255)

                                                                         tctcGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTAt         >  1:1419501/1‑93 (MQ=255)

                                                                          ctcGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATc        >  1:877269/1‑93 (MQ=255)

                                                                          ctcGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATc        >  1:1624839/1‑93 (MQ=255)

                                                                           tcGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATcc       <  2:6022097/93‑1 (MQ=255)

                                                                            cGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCa      >  2:339026/1‑93 (MQ=255)

                                                                             gggTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCTCCGTTATCCAg     <  1:5139326/93‑1 (MQ=255)

                                                                              ggTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGt    <  2:2462502/93‑1 (MQ=255)

                                                                               gTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGtt   <  2:1459363/93‑1 (MQ=255)

                                                                               gTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGtt   >  1:1934007/1‑93 (MQ=255)

                                                                                tGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGttt  <  1:611827/93‑1 (MQ=255)

||

AGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTT  >  NC_000913/3987736‑3987908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCT  >  NC_000913/3987729‑3987911

GGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAC                                                                                           <  SRR4302534.3452037/94‑1 (MQ=60)

GGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAC                                                                                           <  SRR4302534.626576/94‑1 (MQ=60)

     GCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGC                                                                                      <  SRR4302534.5493687/94‑1 (MQ=60)

     GCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGC                                                                                      <  SRR4302534.918592/94‑1 (MQ=60)

      CAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCG                                                                                     <  SRR4302534.2031800/94‑1 (MQ=60)

      CAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCG                                                                                     >  SRR4302534.2639798/1‑94 (MQ=60)

      CAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCG                                                                                     >  SRR4302534.3294398/1‑94 (MQ=60)

       AGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGC                                                                                    >  SRR4302534.101879/1‑94 (MQ=60)

       AGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGC                                                                                    >  SRR4302534.4973670/1‑94 (MQ=60)

       AGCTCGCGAGAGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGC                                                                                    >  SRR4302534.2516713/1‑94 (MQ=60)

        GCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCG                                                                                   <  SRR4302534.4123262/94‑1 (MQ=60)

        GCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCG                                                                                   <  SRR4302534.911296/94‑1 (MQ=60)

        GCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCG                                                                                   <  SRR4302534.2505713/94‑1 (MQ=60)

        GCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCG                                                                                   <  SRR4302534.103803/94‑1 (MQ=60)

         CTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGA                                                                                  >  SRR4302534.4723638/1‑94 (MQ=60)

            GCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATA                                                                               <  SRR4302534.6571133/94‑1 (MQ=60)

             CGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATAC                                                                              <  SRR4302534.3385905/94‑1 (MQ=60)

              GAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACG                                                                             <  SRR4302534.5746932/94‑1 (MQ=60)

              GAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACG                                                                             >  SRR4302534.1353982/1‑94 (MQ=60)

               AGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGT                                                                            >  SRR4302534.420510/1‑94 (MQ=60)

               AGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGT                                                                            >  SRR4302534.1156509/1‑94 (MQ=60)

                GTGCATGAATCATCAAGGCGACATTCAATACCCACCGCGCCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTG                                                                           <  SRR4302534.1723618/94‑1 (MQ=60)

                 TGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGA                                                                          <  SRR4302534.840049/94‑1 (MQ=60)

                   CGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACT                                                                        <  SRR4302534.6124533/94‑1 (MQ=60)

                   CGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACT                                                                        >  SRR4302534.2292313/1‑94 (MQ=60)

                    GTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTC                                                                       >  SRR4302534.2790428/1‑94 (MQ=60)

                     TGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCC                                                                      <  SRR4302534.4026774/94‑1 (MQ=60)

                     TGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCC                                                                      <  SRR4302534.2243367/94‑1 (MQ=60)

                      GAATCATCAGGGC‑GCAATCCATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAG                                                                    <  SRR4302534.1904253/94‑1 (MQ=60)

                      GAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCA                                                                     >  SRR4302534.394702/1‑94 (MQ=60)

                       AATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAG                                                                    >  SRR4302534.3704121/1‑94 (MQ=60)

                         TCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGAC                                                                  <  SRR4302534.1818810/94‑1 (MQ=60)

                          CATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACC                                                                 <  SRR4302534.4630514/94‑1 (MQ=60)

                          CATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACC                                                                 <  SRR4302534.2919741/94‑1 (MQ=60)

                          CATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACC                                                                 >  SRR4302534.5545807/1‑94 (MQ=60)

                          CATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACC                                                                 <  SRR4302534.257921/94‑1 (MQ=60)

                           ATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCT                                                                >  SRR4302534.6083885/1‑94 (MQ=60)

                            TCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTA                                                               >  SRR4302534.3555829/1‑94 (MQ=60)

                            TCAAGGCGGCATCCAATCCCCACGGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTA                                                               <  SRR4302534.5230586/94‑1 (MQ=60)

                             CAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAA                                                              >  SRR4302534.628970/1‑94 (MQ=60)

                             CAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAA                                                              >  SRR4302534.1402332/1‑94 (MQ=60)

                             CAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAA                                                              <  SRR4302534.810283/94‑1 (MQ=60)

                             CAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAA                                                              <  SRR4302534.536353/94‑1 (MQ=60)

                              AAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAA                                                             <  SRR4302534.4960715/94‑1 (MQ=60)

                               AGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAAC                                                            >  SRR4302534.1892537/1‑94 (MQ=60)

                               AGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAAC                                                            <  SRR4302534.5973367/94‑1 (MQ=60)

                                GGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACG                                                           <  SRR4302534.1297912/94‑1 (MQ=60)

                                 GCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGT                                                          <  SRR4302534.1296439/94‑1 (MQ=60)

                                  CGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTT                                                         <  SRR4302534.998899/94‑1 (MQ=60)

                                   GGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTT                                                        >  SRR4302534.3290602/1‑94 (MQ=60)

                                   GGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTT                                                        >  SRR4302534.5972848/1‑94 (MQ=60)

                                   GGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTT                                                        <  SRR4302534.618019/94‑1 (MQ=60)

                                     CATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTA                                                      <  SRR4302534.6097080/94‑1 (MQ=60)

                                       TTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGT                                                    >  SRR4302534.3038826/1‑94 (MQ=60)

                                       TTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGT                                                    >  SRR4302534.3871901/1‑94 (MQ=60)

                                         CAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCC                                                  >  SRR4302534.4634200/1‑94 (MQ=60)

                                         CAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCC                                                  <  SRR4302534.657888/94‑1 (MQ=60)

                                         CAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCC                                                  >  SRR4302534.1822878/1‑94 (MQ=60)

                                         CAAT‑CCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCG                                                 <  SRR4302534.1746417/94‑1 (MQ=60)

                                          AATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCG                                                 >  SRR4302534.4689223/1‑94 (MQ=60)

                                          AATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCG                                                 >  SRR4302534.99194/1‑94 (MQ=60)

                                          AATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTCAGTCCG                                                 >  SRR4302534.1731973/1‑94 (MQ=60)

                                           ATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGG                                                >  SRR4302534.5779672/1‑94 (MQ=60)

                                           ATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGG                                                <  SRR4302534.3152101/94‑1 (MQ=60)

                                             ACTCACCCCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGTCAACGCGGCGCGAGTCCGTGAATCCAGAGCTAAGCGTTTTAGCCCCGCT                                              >  SRR4302534.1037162/1‑94 (MQ=32)

                                             ACCCCCCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCT                                              <  SRR4302534.4481743/94‑1 (MQ=60)

                                             ACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCT                                              <  SRR4302534.5800976/94‑1 (MQ=60)

                                              CCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                             <  SRR4302534.2594736/94‑1 (MQ=60)

                                              CCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                             <  SRR4302534.964993/94‑1 (MQ=60)

                                              CCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                             <  SRR4302534.3887657/94‑1 (MQ=60)

                                              CCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                             <  SRR4302534.5263631/94‑1 (MQ=60)

                                              CCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGCCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                             <  SRR4302534.3815999/94‑1 (MQ=60)

                                               CCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAC                                            >  SRR4302534.2433020/1‑94 (MQ=60)

                                               CCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAC                                            >  SRR4302534.1680664/1‑94 (MQ=60)

                                                CACCGCCCCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                                           <  SRR4302534.3242276/94‑1 (MQ=60)

                                                CACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                                           <  SRR4302534.6138560/94‑1 (MQ=60)

                                                CACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                                           <  SRR4302534.3185245/94‑1 (MQ=60)

                                                CACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                                           <  SRR4302534.1324192/94‑1 (MQ=60)

                                                CACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                                           <  SRR4302534.2205723/94‑1 (MQ=60)

                                                 ACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGG                                          <  SRR4302534.3693799/94‑1 (MQ=60)

                                                  CCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGC                                         >  SRR4302534.1463193/1‑94 (MQ=60)

                                                  CCGCACCGTGTCCTCCCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGC                                         <  SRR4302534.5436490/94‑1 (MQ=60)

                                                     CGCCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAG                                      <  SRR4302534.932083/94‑1 (MQ=60)

                                                     CACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCATACCTAAACGTTTTAGTCCGGCTACGGCAAG                                      >  SRR4302534.6390072/1‑94 (MQ=60)

                                                       CCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAA                                    <  SRR4302534.4249864/94‑1 (MQ=60)

                                                       CCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAA                                    <  SRR4302534.5086975/94‑1 (MQ=60)

                                                       CCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAA                                    >  SRR4302534.740219/1‑94 (MQ=60)

                                                        CTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAAT                                   >  SRR4302534.5573857/1‑94 (MQ=60)

                                                        CTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAAT                                   <  SRR4302534.2718343/94‑1 (MQ=60)

                                                        CTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAAT                                   <  SRR4302534.5031151/94‑1 (MQ=60)

                                                          TGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGA                                 <  SRR4302534.6116141/94‑1 (MQ=60)

                                                          TGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGA                                 <  SRR4302534.3750051/94‑1 (MQ=60)

                                                          TGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGA                                 >  SRR4302534.4394667/1‑94 (MQ=60)

                                                           GTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGAT                                <  SRR4302534.486430/94‑1 (MQ=60)

                                                           GTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGAT                                <  SRR4302534.556786/94‑1 (MQ=60)

                                                           GTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGAT                                >  SRR4302534.465958/1‑94 (MQ=60)

                                                            TCCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATG                               <  SRR4302534.289732/94‑1 (MQ=60)

                                                             CCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGG                              <  SRR4302534.4735859/94‑1 (MQ=60)

                                                             CCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGG                              <  SRR4302534.1697580/94‑1 (MQ=60)

                                                             CCTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGG                              <  SRR4302534.4530951/94‑1 (MQ=60)

                                                              CTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCCAGAATGATGGC                             >  SRR4302534.387797/1‑94 (MQ=60)

                                                              CTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGC                             <  SRR4302534.2777881/94‑1 (MQ=60)

                                                              CTACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGC                             <  SRR4302534.1671849/94‑1 (MQ=60)

                                                               TACCGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCA                            <  SRR4302534.5365751/94‑1 (MQ=60)

                                                                  CGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCG                         >  SRR4302534.1062423/1‑94 (MQ=60)

                                                                  CGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCG                         <  SRR4302534.298100/94‑1 (MQ=60)

                                                                  CGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCG                         >  SRR4302534.3833259/1‑94 (MQ=60)

                                                                  CGCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCG                         <  SRR4302534.2708075/94‑1 (MQ=60)

                                                                   GCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGT                        >  SRR4302534.1209569/1‑94 (MQ=60)

                                                                   GCCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGT                        >  SRR4302534.6422953/1‑94 (MQ=60)

                                                                    CCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTA                       <  SRR4302534.4913224/94‑1 (MQ=60)

                                                                    CCGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTA                       <  SRR4302534.3049915/94‑1 (MQ=60)

                                                                     CGGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAT                      >  SRR4302534.4843765/1‑94 (MQ=60)

                                                                      GGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATT                     >  SRR4302534.5686237/1‑94 (MQ=60)

                                                                      GGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATT                     <  SRR4302534.6587613/94‑1 (MQ=60)

                                                                      GGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATT                     >  SRR4302534.4335011/1‑94 (MQ=60)

                                                                      GGAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATT                     >  SRR4302534.5516696/1‑94 (MQ=60)

                                                                       GAAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTC                    >  SRR4302534.752499/1‑94 (MQ=60)

                                                                        AAGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCG                   >  SRR4302534.4647525/1‑94 (MQ=60)

                                                                         AGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGC                  >  SRR4302534.530094/1‑94 (MQ=60)

                                                                         AGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGC                  >  SRR4302534.3075908/1‑94 (MQ=60)

                                                                         AGAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGC                  >  SRR4302534.3804035/1‑94 (MQ=60)

                                                                          GAGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCC                 <  SRR4302534.1984885/94‑1 (MQ=60)

                                                                           AGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCG                >  SRR4302534.572531/1‑94 (MQ=60)

                                                                           AGAAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCG                >  SRR4302534.5542953/1‑94 (MQ=60)

                                                                             AAATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTT              <  SRR4302534.1206468/94‑1 (MQ=60)

                                                                              AATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTA             <  SRR4302534.2992047/94‑1 (MQ=60)

                                                                               ATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTAT            >  SRR4302534.1194318/1‑94 (MQ=60)

                                                                               ATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTAT            <  SRR4302534.3787437/94‑1 (MQ=60)

                                                                               ATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTAT            >  SRR4302534.1456850/1‑94 (MQ=60)

                                                                                TCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATC           >  SRR4302534.899454/1‑94 (MQ=60)

                                                                                TCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATC           >  SRR4302534.1667233/1‑94 (MQ=60)

                                                                                 CTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCC          >  SRR4302534.6194592/1‑94 (MQ=60)

                                                                                   CGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAG        >  SRR4302534.3531766/1‑94 (MQ=60)

                                                                                   CGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAG        >  SRR4302534.2141180/1‑94 (MQ=60)

                                                                                   CGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAG        >  SRR4302534.1564842/1‑94 (MQ=60)

                                                                                   CGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAG        >  SRR4302534.5937128/1‑94 (MQ=60)

                                                                                    GGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCTCCGTTATCCAGT       <  SRR4302534.5278026/94‑1 (MQ=60)

                                                                                     GGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTT      <  SRR4302534.3175416/94‑1 (MQ=60)

                                                                                     GGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTT      >  SRR4302534.1984582/1‑94 (MQ=60)

                                                                                      GTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTT     <  SRR4302534.4352434/94‑1 (MQ=60)

                                                                                       TGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTG    <  SRR4302534.5385972/94‑1 (MQ=60)

                                                                                       TGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTG    >  SRR4302534.3512712/1‑94 (MQ=60)

                                                                                       TGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTG    <  SRR4302534.626696/94‑1 (MQ=60)

                                                                                       TGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTG    >  SRR4302534.1085751/1‑94 (MQ=60)

                                                                                        GGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGC   >  SRR4302534.2457930/1‑94 (MQ=60)

                                                                                         GCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCT  <  SRR4302534.617289/94‑1 (MQ=60)

GGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCT  >  NC_000913/3987729‑3987911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`