Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,085,675 |
Δ1 bp |
intergenic (+38/+13) |
yiiG → / ← frvR |
hypothetical protein/putative frv operon regulatory protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,085,675 | 0 | G | . | 99.5%
| 938.6
/ ‑3.7
| 202 | intergenic (+38/+13) | yiiG/frvR | hypothetical protein/putative frv operon regulatory protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (117/84); minor base C (0/1); total (117/85) |
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 219 total aligned reads displayed.
GCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA > NC_000913/4085587‑4085762
|
gCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCg > 1:4483411/1‑93 (MQ=255)
aTTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGac > 2:5416394/1‑93 (MQ=255)
aTTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGac < 1:597319/93‑1 (MQ=255)
aCGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGAcaca < 1:81990/93‑1 (MQ=255)
cgcgAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAg > 2:3375294/1‑93 (MQ=255)
cgcgAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAg < 2:3694004/93‑1 (MQ=255)
gcgAGTACAACGAAATGGTTGATGACTATAATAGCTTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGt < 1:1144181/93‑1 (MQ=255)
gcgAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGt > 1:1799254/1‑93 (MQ=255)
gAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTc < 1:4015053/93‑1 (MQ=255)
gTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAc > 2:4432378/1‑93 (MQ=255)
aCAACGAAATGGTTGATGACTATAATAGCCTGCTTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAccc < 2:2290049/93‑1 (MQ=255)
aCAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAccc > 2:31908/1‑93 (MQ=255)
aCAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAccc > 2:1843532/1‑93 (MQ=255)
aCAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAccc < 2:4706767/93‑1 (MQ=255)
cAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAcccc > 1:3308277/1‑93 (MQ=255)
cAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAcccc < 2:2699048/93‑1 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCt < 1:663866/93‑1 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCt < 2:4646027/93‑1 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCt > 1:4957835/1‑93 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCt > 1:4327747/1‑93 (MQ=255)
aaCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGCATGCGGC‑CCATCCGACACAGTTCCCCCCt < 1:5376139/93‑1 (MQ=255)
aCGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCtt < 2:2799284/93‑1 (MQ=255)
aaaTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTtgtg > 2:2523002/1‑93 (MQ=255)
aaaTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTtgtg > 2:3137202/1‑93 (MQ=255)
aaTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGa > 2:3938250/1‑93 (MQ=255)
aaTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGa > 1:5162227/1‑93 (MQ=255)
aaTGGTTAATAACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGa < 1:3808759/93‑1 (MQ=255)
aTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGaa > 1:3128894/1‑93 (MQ=255)
gatgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACt > 1:4827713/1‑93 (MQ=255)
gaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCCACACAGTTTACCCCTTGTGAAGTAACTCCa > 1:2243286/1‑93 (MQ=255)
aCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCAt > 1:4894951/1‑93 (MQ=255)
cTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATa > 1:2636725/1‑93 (MQ=255)
tataATAGCCTGCGTTAAACGTTTTTGATGATAAATGAAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGCAACGCCATaa > 2:4055845/1‑93 (MQ=255)
ataataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATaaa < 2:2618835/93‑1 (MQ=255)
taataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAAt > 1:5024799/1‑93 (MQ=255)
taataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAAt > 2:5551432/1‑93 (MQ=255)
aataGCCTGCGTTAAACGTTTTTGGTGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATg < 1:3235822/93‑1 (MQ=255)
aataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATg < 2:6115159/93‑1 (MQ=255)
ataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGc > 1:1268926/1‑93 (MQ=255)
ataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGc > 2:5330076/1‑93 (MQ=255)
taGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGcc < 2:5834643/93‑1 (MQ=255)
taGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGcc > 1:5583101/1‑93 (MQ=255)
taGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGcc < 2:1749259/93‑1 (MQ=255)
gCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTc < 2:4254299/93‑1 (MQ=255)
gCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTc > 2:4816677/1‑93 (MQ=255)
ccTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCa > 2:187089/1‑93 (MQ=255)
ccTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGCGAAGTAACTCCATAAATGCCTCa > 2:1358120/1‑93 (MQ=255)
cTGCGTTAACCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCat < 2:216697/93‑1 (MQ=255)
cTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCat < 2:3113519/93‑1 (MQ=255)
tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCata < 2:3592719/93‑1 (MQ=255)
tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCata > 2:5998648/1‑93 (MQ=255)
cGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATc < 2:4735805/93‑1 (MQ=255)
cGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATc > 2:3025158/1‑93 (MQ=255)
gTTAAACTTTTTTGATAATAAATGCAGTGTGGGATGCGGCGC‑ACCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATcc < 2:4385869/93‑1 (MQ=255)
gTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCTGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATCTcc > 1:3701605/1‑93 (MQ=255)
gTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATcc < 2:75033/93‑1 (MQ=255)
tAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTg > 1:1327812/1‑93 (MQ=255)
tAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTg > 2:2931191/1‑93 (MQ=255)
tAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTg > 1:4445637/1‑93 (MQ=255)
aaaCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGt > 2:3963053/1‑93 (MQ=255)
cGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTaa < 1:2041851/93‑1 (MQ=255)
gTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAc < 2:4105134/93‑1 (MQ=255)
gTTTTTGATAAAAAAGGCAGTGTCGGATGCGGC‑CCACCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAc < 1:115115/93‑1 (MQ=255)
ttttGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAccc > 2:1193666/1‑93 (MQ=255)
ttGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCgg < 1:1521722/93‑1 (MQ=255)
gatgatAAATGCAGTGTCGTATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa > 1:6291356/1‑93 (MQ=255)
gatgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa > 2:807003/1‑93 (MQ=255)
gatgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa > 1:73260/1‑93 (MQ=255)
atgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaa < 2:660292/93‑1 (MQ=255)
atAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataa > 1:3945851/1‑93 (MQ=255)
atAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataa < 1:6383677/93‑1 (MQ=255)
tAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataat < 1:2832668/93‑1 (MQ=255)
tAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataat < 2:4316396/93‑1 (MQ=255)
aaaaTGGAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataat < 2:1345717/92‑1 (MQ=255)
aaaTGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCAACCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtc > 2:2049031/1‑93 (MQ=255)
aaTGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtct < 1:754419/93‑1 (MQ=255)
aaTGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtct > 2:581523/1‑93 (MQ=255)
aaTGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtct < 2:5162291/93‑1 (MQ=255)
tGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc < 2:5609536/93‑1 (MQ=255)
tGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc < 2:4620925/93‑1 (MQ=255)
tGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc > 2:39098/1‑93 (MQ=255)
gCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccg > 1:1488560/1‑93 (MQ=255)
gCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAACCGGCAATAATCTccg > 1:4771447/1‑93 (MQ=255)
gCAGCGTCGAAGGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccg < 1:3394109/93‑1 (MQ=255)
cgtggtCGGAGGCGGC‑CCACCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgc < 2:4483411/89‑1 (MQ=255)
aGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgcc > 2:6441628/1‑93 (MQ=255)
aGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgcc < 2:6360870/93‑1 (MQ=255)
tCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAt < 1:4649956/93‑1 (MQ=255)
tCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAt < 1:3775518/93‑1 (MQ=255)
ggATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGc > 2:58909/1‑93 (MQ=255)
gATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt > 1:3494855/1‑93 (MQ=255)
gATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt < 2:1067105/93‑1 (MQ=255)
gATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt > 2:3792826/1‑93 (MQ=255)
gATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt > 2:140480/1‑93 (MQ=255)
aTGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTg < 1:5759769/93‑1 (MQ=255)
gcggcgC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac > 2:1727523/1‑93 (MQ=255)
gcggcgC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac < 1:5840435/93‑1 (MQ=255)
gcggcgC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac < 2:1701087/93‑1 (MQ=255)
gcggcgC‑ACCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGac < 1:5422587/93‑1 (MQ=255)
cggcgC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGaca > 2:5047643/1‑93 (MQ=255)
|
GCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA > NC_000913/4085587‑4085762
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGAT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT > NC_000913/4085582‑4085768
|
CGAGAGCATTACGCGAGTACAATGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCA > SRR4302534.1395025/1‑94 (MQ=60)
AGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑C > SRR4302534.1652210/1‑94 (MQ=60)
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CC > SRR4302534.6260237/1‑94 (MQ=60)
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CC > SRR4302534.4716547/1‑94 (MQ=60)
GAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CC < SRR4302534.3472371/94‑1 (MQ=60)
AGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCG > SRR4302534.4604713/1‑94 (MQ=60)
CATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGAC > SRR4302534.4971207/1‑94 (MQ=60)
ATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACA < SRR4302534.611884/94‑1 (MQ=60)
ACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAG < SRR4302534.84192/94‑1 (MQ=60)
ACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAG > SRR4302534.551109/1‑94 (MQ=60)
CGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGTGC‑AT‑CCGCCACAGT < SRR4302534.4181365/94‑1 (MQ=60)
CGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGT > SRR4302534.1845972/1‑94 (MQ=60)
CGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGT > SRR4302534.5957287/1‑94 (MQ=60)
GCGAGTACAACGAAATGGTTGATGACTATAATAGCTTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTT < SRR4302534.1174135/94‑1 (MQ=60)
GAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCA > SRR4302534.1460176/1‑94 (MQ=60)
GAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCA < SRR4302534.4122650/94‑1 (MQ=60)
ACAACGAAATGGTTGATTACTATAATAGCCTGCCTTAAACTTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCC < SRR4302534.2773013/94‑1 (MQ=60)
ACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCC > SRR4302534.3396624/1‑94 (MQ=60)
CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCT < SRR4302534.397737/94‑1 (MQ=60)
CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCT > SRR4302534.5092094/1‑94 (MQ=60)
CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCT > SRR4302534.4444813/1‑94 (MQ=60)
AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTT < SRR4302534.680027/94‑1 (MQ=60)
AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGCATGCGGC‑CCAT‑CCGACACAGTTCCCCCCTT < SRR4302534.5520992/94‑1 (MQ=60)
ACGAAAGGTTTGATGACTATAATAGCCTGCTTTAATCGTTTTTGATAATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTG < SRR4302534.2540863/94‑1 (MQ=60)
AAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGA > SRR4302534.5301398/1‑94 (MQ=60)
AATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAA > SRR4302534.3211150/1‑94 (MQ=60)
AATGGTTAATAACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAA < SRR4302534.3911016/94‑1 (MQ=60)
TGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGT < SRR4302534.4753385/94‑1 (MQ=60)
GGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTA < SRR4302534.5023833/94‑1 (MQ=60)
GGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTA < SRR4302534.730237/94‑1 (MQ=60)
TGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACT > SRR4302534.4958712/1‑94 (MQ=60)
ATAACAATAATAGCCTGCTTTAAACTTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AC‑CCGACACAGTTCACCCCTTGTGAAGTAACTCC < SRR4302534.221287/94‑1 (MQ=60)
TGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCA > SRR4302534.1248049/1‑94 (MQ=60)
TGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCCACACAGTTTACCCCTTGTGAAGTAACTCCA > SRR4302534.2302739/1‑94 (MQ=60)
TGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGGCGGATGCGGGGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCA > SRR4302534.3240359/1‑94 (MQ=60)
GACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCAT > SRR4302534.3853903/1‑94 (MQ=60)
GACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCAT > SRR4302534.5027663/1‑94 (MQ=60)
GACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCAT > SRR4302534.783109/1‑94 (MQ=60)
ACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATA > SRR4302534.2706482/1‑94 (MQ=60)
ataatgccctggtTTAAATGTTTTGGATGAAAAATGCAGTGTCGGATGCGGCGC‑‑TCCCAACACAGTTCACCCCTTGTGAAGTAACTCCATAAAT < SRR4302534.4600576/81‑1 (MQ=50)
ATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAAT > SRR4302534.763611/1‑94 (MQ=60)
ATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAAT > SRR4302534.5160524/1‑94 (MQ=60)
TGATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATG > SRR4302534.3251582/1‑94 (MQ=60)
AATAGCCTGCGTTAAACGTTTTTGGTGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGC < SRR4302534.3321894/94‑1 (MQ=60)
AATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGC > SRR4302534.1302351/1‑94 (MQ=60)
ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCC > SRR4302534.5733962/1‑94 (MQ=60)
TAGCCTGCTTTAAACTTTTTTGATGATAAATGCAGTGTCGGAGGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCT < SRR4302534.3408053/94‑1 (MQ=60)
AGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTC > SRR4302534.980558/1‑94 (MQ=60)
AGCCTGCGTTAAACGTTTTTGATGATAAAGGCAGTGTCGGATGCGGCGC‑AC‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTC < SRR4302534.3570717/94‑1 (MQ=60)
CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCAT > SRR4302534.6321442/1‑94 (MQ=60)
CTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATA > SRR4302534.4778482/1‑94 (MQ=60)
TGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATAT < SRR4302534.2193519/94‑1 (MQ=60)
CGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATAT < SRR4302534.1552895/94‑1 (MQ=60)
CGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCTGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATCTCC > SRR4302534.3801105/1‑94 (MQ=60)
CGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCC > SRR4302534.1591134/1‑94 (MQ=60)
ttaaagcgttttggataaaaaagGCAGTGCCGGATGCGGCGC‑AC‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCT < SRR4302534.2337925/71‑1 (MQ=60)
TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTG > SRR4302534.4902814/1‑94 (MQ=60)
TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTG > SRR4302534.1362817/1‑94 (MQ=60)
TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTG > SRR4302534.4565749/1‑94 (MQ=60)
TAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGT < SRR4302534.6324056/94‑1 (MQ=60)
AAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTT < SRR4302534.5030669/94‑1 (MQ=60)
AAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTT > SRR4302534.3343259/1‑94 (MQ=60)
CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC < SRR4302534.2095223/94‑1 (MQ=60)
CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC > SRR4302534.5554788/1‑94 (MQ=60)
GTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACC > SRR4302534.1177420/1‑94 (MQ=60)
GTTTTTGATAAAAAAGGCAGTGTCGGATGCGGC‑CCAC‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACC < SRR4302534.118183/94‑1 (MQ=60)
TTGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGC < SRR4302534.1561678/94‑1 (MQ=60)
TGATGATAAATGCAGTGTCGTATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA > SRR4302534.6461562/1‑94 (MQ=60)
TGATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA > SRR4302534.75254/1‑94 (MQ=60)
GATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAA > SRR4302534.3692349/1‑94 (MQ=60)
ATGATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT > SRR4302534.6098204/1‑94 (MQ=60)
GATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAA > SRR4302534.4051501/1‑94 (MQ=60)
GATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAA > SRR4302534.3886910/1‑94 (MQ=60)
ATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAT < SRR4302534.6556121/94‑1 (MQ=60)
ATAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAT < SRR4302534.6552049/94‑1 (MQ=60)
TAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATC < SRR4302534.2907102/94‑1 (MQ=60)
TAAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATC > SRR4302534.1562254/1‑94 (MQ=60)
AAATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCT > SRR4302534.2961265/1‑94 (MQ=60)
AATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTC > SRR4302534.5153791/1‑94 (MQ=60)
AATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTC < SRR4302534.773116/94‑1 (MQ=60)
AATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTC > SRR4302534.5246649/1‑94 (MQ=60)
ATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCCCCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC < SRR4302534.1943755/94‑1 (MQ=60)
ATGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC > SRR4302534.4466563/1‑94 (MQ=60)
TGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCG > SRR4302534.1527709/1‑94 (MQ=60)
TGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCG > SRR4302534.4112628/1‑94 (MQ=60)
TGCAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAACCGGCAATAATCTCCG > SRR4302534.4900999/1‑94 (MQ=60)
GCAGCGTCGAAGGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGC < SRR4302534.3485169/94‑1 (MQ=60)
CAGTGTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCC > SRR4302534.3733837/1‑94 (MQ=60)
TGTCGGGTGCGGCGC‑AT‑CCGACACAGTTCACCCCCTGTGAAGTAAATCCATAAAAGCCTCATATCCTGTTAACCCGGCAATAAACTCCGCCcgg > SRR4302534.4653472/1‑91 (MQ=60)
GTCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT > SRR4302534.5612771/1‑94 (MQ=60)
TCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATG < SRR4302534.4776191/94‑1 (MQ=60)
TCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATG > SRR4302534.1309384/1‑94 (MQ=60)
TCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATG < SRR4302534.3876888/94‑1 (MQ=60)
TCGGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATG > SRR4302534.909260/1‑94 (MQ=60)
GGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT < SRR4302534.243955/94‑1 (MQ=60)
GGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT < SRR4302534.5324821/94‑1 (MQ=60)
GGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT > SRR4302534.3588833/1‑94 (MQ=60)
GGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT > SRR4302534.5903178/1‑94 (MQ=60)
GGATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT < SRR4302534.4485231/94‑1 (MQ=60)
ATGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGA < SRR4302534.5916005/94‑1 (MQ=60)
TGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGAC < SRR4302534.2979836/94‑1 (MQ=60)
TGCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGAC > SRR4302534.6594101/1‑94 (MQ=60)
GCGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA < SRR4302534.5998981/94‑1 (MQ=60)
GCGGCGC‑AC‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA < SRR4302534.5568515/94‑1 (MQ=60)
CGGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACAC > SRR4302534.3701776/1‑94 (MQ=60)
GGCGC‑AT‑CCGACACAGTTCACCCCTTGTGCAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACA > SRR4302534.3530727/1‑94 (MQ=60)
GGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACA < SRR4302534.1640986/94‑1 (MQ=60)
GGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACA < SRR4302534.4020386/94‑1 (MQ=60)
GGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACA > SRR4302534.237396/1‑94 (MQ=60)
GGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACA > SRR4302534.6217347/1‑94 (MQ=60)
GGCGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACA > SRR4302534.2466836/1‑94 (MQ=60)
GCGC‑AT‑CCGACACAGTTCACGCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAA < SRR4302534.3071761/94‑1 (MQ=60)
CGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAAT > SRR4302534.4316001/1‑94 (MQ=60)
CGC‑AT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAAT < SRR4302534.2406802/94‑1 (MQ=60)
CAT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT > SRR4302534.872546/1‑94 (MQ=60)
|
CGAGAGCATTACGCGAGTACAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGAT‑CCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT > NC_000913/4085582‑4085768
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
