Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,109,226	A→G	L190P (CTA→CCA)	yiiQ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,109,226	0	A	G	100.0%	870.4 / NA	247	L190P (CTA→CCA)	yiiQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (145/102); total (145/102)

Only 100 of 250 total aligned reads displayed.

AGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTG  >  NC_000913/4109136‑4109315

aGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGgc                                                                                         >  1:4001501/1‑93 (MQ=255)

aGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGgc                                                                                         <  2:545185/93‑1 (MQ=255)

aGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGgc                                                                                         >  1:265583/1‑93 (MQ=255)

aGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGgc                                                                                         >  2:6282497/1‑93 (MQ=255)

 gggCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGgcg                                                                                        >  2:2781070/1‑93 (MQ=255)

 gggCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGgcg                                                                                        >  1:4491806/1‑93 (MQ=255)

 gggCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGgcg                                                                                        >  2:4248775/1‑93 (MQ=255)

   gcagcaGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGcc                                                                                      <  2:6153883/93‑1 (MQ=255)

   gcagcaGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGcc                                                                                      <  2:4065026/93‑1 (MQ=255)

   gcagcaGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGcc                                                                                      <  2:5913399/93‑1 (MQ=255)

     agcagGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAg                                                                                    >  1:3087264/1‑93 (MQ=255)

        agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCtt                                                                                 >  2:2901924/1‑93 (MQ=255)

        agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCtt                                                                                 >  2:2829253/1‑93 (MQ=255)

        agGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCtt                                                                                 >  2:1551647/1‑93 (MQ=255)

         ggTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTa                                                                                >  2:3613452/1‑93 (MQ=255)

         ggTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTa                                                                                >  2:5235259/1‑93 (MQ=255)

            cTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATc                                                                             <  1:3058391/93‑1 (MQ=255)

             tgtgAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCg                                                                            >  1:4465744/1‑93 (MQ=255)

              gtgAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCgg                                                                           >  1:69594/1‑93 (MQ=255)

                gAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGtt                                                                         <  2:2235963/93‑1 (MQ=255)

                gAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGtt                                                                         >  1:1842211/1‑93 (MQ=255)

                 aaaCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTc                                                                        >  2:2536234/1‑93 (MQ=255)

                 aaaCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTc                                                                        <  2:4398160/93‑1 (MQ=255)

                  aaCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCa                                                                       <  1:2349650/93‑1 (MQ=255)

                   aCAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCaa                                                                      >  2:3199646/1‑93 (MQ=255)

                    cAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAAc                                                                     <  2:944318/93‑1 (MQ=255)

                     aGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACa                                                                    >  1:3730815/1‑93 (MQ=255)

                      gTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAg                                                                   >  1:1352202/1‑93 (MQ=255)

                      gTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAg                                                                   <  2:5965256/93‑1 (MQ=255)

                       tataGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGc                                                                  <  2:1377060/93‑1 (MQ=255)

                        ataGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCg                                                                 >  2:5117509/1‑93 (MQ=255)

                          agagATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGaa                                                               <  2:1241841/93‑1 (MQ=255)

                            agaTTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAgg                                                             <  1:1554289/93‑1 (MQ=255)

                              aTTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTc                                                           >  2:5521959/1‑93 (MQ=255)

                              aTTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTc                                                           >  2:2918776/1‑93 (MQ=255)

                               ttCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCa                                                          >  2:5400484/1‑93 (MQ=255)

                                tCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAg                                                         >  2:1899383/1‑93 (MQ=255)

                                tCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAg                                                         >  1:2255012/1‑93 (MQ=255)

                                  aTCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGcc                                                       <  1:1021020/93‑1 (MQ=255)

                                   tCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGccc                                                      <  2:1600533/93‑1 (MQ=255)

                                        acaAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCtttt                                                 <  1:3813505/93‑1 (MQ=255)

                                        acaAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCtttt                                                 <  1:4768352/93‑1 (MQ=255)

                                         caAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTc                                                >  1:3258778/1‑93 (MQ=255)

                                          aaaGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCg                                               >  2:3457193/1‑93 (MQ=255)

                                          aaaGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCg                                               >  2:5649733/1‑93 (MQ=255)

                                           aaGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTgcgc                                              >  1:2472234/1‑93 (MQ=255)

                                            aGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGcc                                             <  1:2342814/93‑1 (MQ=255)

                                            aGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGcc                                             >  2:6383915/1‑93 (MQ=255)

                                             ggCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCg                                            <  1:21765/93‑1 (MQ=255)

                                             ggCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCg                                            >  2:4183030/1‑93 (MQ=255)

                                             ggCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCg                                            >  1:1472381/1‑93 (MQ=255)

                                              gctttgctttTTGTCATTTATTCAAGCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGt                                           <  2:6107754/93‑1 (MQ=255)

                                              gctttgctttTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGt                                           <  2:1591103/93‑1 (MQ=255)

                                              gctttgctttTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGt                                           <  1:2765042/93‑1 (MQ=255)

                                                tttgctttTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTg                                         <  1:5149358/93‑1 (MQ=255)

                                                  tgctttTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTc                                       <  1:3362896/93‑1 (MQ=255)

                                                  tgctttTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTc                                       >  1:3661906/1‑93 (MQ=255)

                                                     tttttGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCcgc                                    <  2:1996953/93‑1 (MQ=255)

                                                     tttttGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCcgc                                    >  1:6228437/1‑93 (MQ=255)

                                                      ttttGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCcgcg                                   >  1:977355/1‑93 (MQ=255)

                                                         tGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGaca                                >  1:4713369/1‑93 (MQ=255)

                                                          gTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGacaa                               <  1:774746/93‑1 (MQ=255)

                                                          gTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGacaa                               >  2:5340089/1‑93 (MQ=255)

                                                           tCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGacaac                              <  1:5185675/93‑1 (MQ=255)

                                                             aTTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGTAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAt                            >  1:441155/1‑93 (MQ=255)

                                                             aTTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAt                            >  1:946665/1‑93 (MQ=255)

                                                             aTTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAt                            >  1:6277090/1‑93 (MQ=255)

                                                              tttATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATa                           >  1:5735171/1‑93 (MQ=255)

                                                              tttATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTAAACAGCGAAGGACAGCCCCTTTTCGCCGTTGTCCGTGACAACATa                           >  1:2552321/1‑93 (MQ=255)

                                                               ttATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATaa                          <  1:580008/93‑1 (MQ=255)

                                                               ttATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATaa                          <  2:4981320/93‑1 (MQ=255)

                                                                  ttCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                       >  2:657953/1‑93 (MQ=255)

                                                                  ttCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGc                       >  2:2676406/1‑93 (MQ=255)

                                                                     aaaCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGt                    >  2:4859745/1‑93 (MQ=255)

                                                                     aaaCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGt                    >  1:817483/1‑93 (MQ=255)

                                                                      acccTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTg                   <  1:4121314/91‑1 (MQ=255)

                                                                      aaCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTg                   >  1:664110/1‑93 (MQ=255)

                                                                      aaCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTg                   >  1:4584224/1‑93 (MQ=255)

                                                                      aaCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTg                   >  1:5111877/1‑93 (MQ=255)

                                                                      aaCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTg                   >  1:6435458/1‑93 (MQ=255)

                                                                      aaCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTg                   >  1:4271586/1‑93 (MQ=255)

                                                                       aCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGc                  >  2:3847362/1‑93 (MQ=255)

                                                                        ccTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCa                 >  2:4687094/1‑93 (MQ=255)

                                                                         cTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCAc                >  2:796843/1‑93 (MQ=255)

                                                                            cAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCtt             >  1:4063506/1‑93 (MQ=255)

                                                                             aaGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGGCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTc            >  2:3249418/1‑93 (MQ=255)

                                                                              aGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCt           >  2:1832562/1‑93 (MQ=255)

                                                                               gCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTg          >  1:1902894/1‑93 (MQ=255)

                                                                                  aTTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct       <  2:698020/93‑1 (MQ=255)

                                                                                  aTTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct       >  1:1072482/1‑93 (MQ=255)

                                                                                  aTTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct       >  2:5739742/1‑93 (MQ=255)

                                                                                  aTTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtct       <  1:3487193/93‑1 (MQ=255)

                                                                                   ttCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtctc      <  2:2128988/93‑1 (MQ=255)

                                                                                   ttCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtctc      <  2:2051682/93‑1 (MQ=255)

                                                                                   ttCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGtctc      >  1:1326643/1‑93 (MQ=255)

                                                                                    tCAGATGGCGCCAGCTTAATCGGTTCAGCAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCg     <  1:642995/93‑1 (MQ=255)

                                                                                    tCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCg     <  1:5324393/93‑1 (MQ=255)

                                                                                     cAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCgg    <  2:4374948/93‑1 (MQ=255)

                                                                                     cAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCACTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCgg    >  2:4537245/1‑93 (MQ=255)

                                                                                      aGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGgt   <  2:1102038/93‑1 (MQ=255)

AGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTG  >  NC_000913/4109136‑4109315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAAT  >  NC_000913/4109133‑4109319

CGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATG                                                                                               >  SRR4302534.3836359/1‑94 (MQ=60)

CGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATG                                                                                               >  SRR4302534.5670403/1‑94 (MQ=60)

CGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATG                                                                                               <  SRR4302534.5335053/94‑1 (MQ=60)

 GCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGG                                                                                              >  SRR4302534.1793602/1‑94 (MQ=60)

  CAGTGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGC                                                                                             <  SRR4302534.2920149/94‑1 (MQ=60)

  CAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGC                                                                                             >  SRR4302534.272474/1‑94 (MQ=60)

  CAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGC                                                                                             >  SRR4302534.4108628/1‑94 (MQ=60)

   AGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCG                                                                                            >  SRR4302534.4613350/1‑94 (MQ=60)

      GCAGCAGGGCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCA                                                                                         <  SRR4302534.2839160/94‑1 (MQ=60)

       CAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAG                                                                                        >  SRR4302534.3514005/1‑94 (MQ=60)

       CAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAG                                                                                        >  SRR4302534.1426614/1‑94 (MQ=60)

       CAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAG                                                                                        >  SRR4302534.3472555/1‑94 (MQ=60)

       CAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAG                                                                                        >  SRR4302534.3168400/1‑94 (MQ=60)

       CAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGCCATTTATTCAAACCTTCAAGCGATTCAGATGTCGCCAG                                                                                        >  SRR4302534.913863/1‑94 (MQ=60)

        AGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGC                                                                                       >  SRR4302534.4581108/1‑94 (MQ=60)

         GCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCT                                                                                      <  SRR4302534.131482/94‑1 (MQ=60)

          CAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTT                                                                                     >  SRR4302534.831341/1‑94 (MQ=60)

          CAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTT                                                                                     >  SRR4302534.665078/1‑94 (MQ=60)

           AGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTA                                                                                    >  SRR4302534.4455544/1‑94 (MQ=60)

              TCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATC                                                                                 <  SRR4302534.1541315/94‑1 (MQ=60)

               CTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCG                                                                                >  SRR4302534.4586499/1‑94 (MQ=60)

               CTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCG                                                                                >  SRR4302534.5658728/1‑94 (MQ=60)

               CTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCG                                                                                <  SRR4302534.3138646/94‑1 (MQ=60)

               CTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCG                                                                                <  SRR4302534.150331/94‑1 (MQ=60)

                TGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGG                                                                               >  SRR4302534.71496/1‑94 (MQ=60)

                 GTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGT                                                                              <  SRR4302534.3237947/94‑1 (MQ=60)

                  TGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTT                                                                             >  SRR4302534.1890092/1‑94 (MQ=60)

                    AAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCA                                                                           <  SRR4302534.6629448/94‑1 (MQ=60)

                     AACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAA                                                                          <  SRR4302534.2412006/94‑1 (MQ=60)

                       CAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACA                                                                        <  SRR4302534.6500423/94‑1 (MQ=60)

                       CAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACA                                                                        >  SRR4302534.3831060/1‑94 (MQ=60)

                        AGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAG                                                                       >  SRR4302534.1387849/1‑94 (MQ=60)

                         GTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGC                                                                      >  SRR4302534.3891620/1‑94 (MQ=60)

                               AGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGT                                                                <  SRR4302534.1594995/94‑1 (MQ=60)

                                GATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTC                                                               >  SRR4302534.2221527/1‑94 (MQ=60)

                                GATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTC                                                               >  SRR4302534.4760158/1‑94 (MQ=60)

                                 ATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCA                                                              <  SRR4302534.5380848/94‑1 (MQ=60)

                                  TTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAG                                                             >  SRR4302534.2314786/1‑94 (MQ=60)

                                  TTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAG                                                             >  SRR4302534.2059806/1‑94 (MQ=60)

                                    CATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCC                                                           >  SRR4302534.6577018/1‑94 (MQ=60)

                                     ATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCC                                                          <  SRR4302534.1047307/94‑1 (MQ=60)

                                     ATCGGCACAAAAGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCC                                                          >  SRR4302534.4035191/1‑94 (MQ=60)

                                         GCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTT                                                      <  SRR4302534.1383494/94‑1 (MQ=60)

                                           ACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTC                                                    <  SRR4302534.4897817/94‑1 (MQ=60)

                                           ACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTC                                                    <  SRR4302534.3915929/94‑1 (MQ=60)

                                           ACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTC                                                    >  SRR4302534.691552/1‑94 (MQ=60)

                                           ACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTC                                                    >  SRR4302534.3345558/1‑94 (MQ=60)

                                             AAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTGCGC                                                  >  SRR4302534.2537936/1‑94 (MQ=60)

                                               AGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCG                                                <  SRR4302534.2404985/94‑1 (MQ=60)

                                               AGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCG                                                >  SRR4302534.1511113/1‑94 (MQ=60)

                                                GGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGT                                               >  SRR4302534.2800567/1‑94 (MQ=60)

                                                GGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGT                                               <  SRR4302534.22343/94‑1 (MQ=60)

                                                 GCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTT                                              <  SRR4302534.2837838/94‑1 (MQ=60)

                                                 GCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTT                                              >  SRR4302534.3447700/1‑94 (MQ=60)

                                                 GCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTT                                              <  SRR4302534.1342391/94‑1 (MQ=60)

                                                   TTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGT                                            <  SRR4302534.5288282/94‑1 (MQ=60)

                                                    TTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTC                                           >  SRR4302534.3760321/1‑94 (MQ=60)

                                                     TGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCC                                          <  SRR4302534.3452964/94‑1 (MQ=60)

                                                      GCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCG                                         <  SRR4302534.6606284/94‑1 (MQ=60)

                                                       CTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGC                                        >  SRR4302534.4155755/1‑94 (MQ=60)

                                                       CTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGC                                        >  SRR4302534.5087108/1‑94 (MQ=60)

                                                       CTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGC                                        >  SRR4302534.1924984/1‑94 (MQ=60)

                                                       CTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGC                                        <  SRR4302534.2378201/94‑1 (MQ=60)

                                                       CTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGC                                        >  SRR4302534.6397523/1‑94 (MQ=60)

                                                        tttttgacattaattgaaccctaaatGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACACCAAAGGTCAGCCTTTTTACGCCGTTGTCTGCG                                       <  SRR4302534.3769193/68‑1 (MQ=30)

                                                        TTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCG                                       >  SRR4302534.1002301/1‑94 (MQ=60)

                                                        TTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCG                                       <  SRR4302534.27091/94‑1 (MQ=60)

                                                           TTGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACA                                    >  SRR4302534.4841370/1‑94 (MQ=60)

                                                            TGTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAA                                   >  SRR4302534.4611292/1‑94 (MQ=60)

                                                             GTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAAC                                  <  SRR4302534.794050/94‑1 (MQ=60)

                                                             GTCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAAC                                  >  SRR4302534.2386023/1‑94 (MQ=60)

                                                              TCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACA                                 >  SRR4302534.2242367/1‑94 (MQ=60)

                                                              TCATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACA                                 <  SRR4302534.5325451/94‑1 (MQ=60)

                                                               CATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGTAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAT                                >  SRR4302534.452371/1‑94 (MQ=60)

                                                               CATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAT                                >  SRR4302534.6446994/1‑94 (MQ=60)

                                                               CATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAT                                >  SRR4302534.3164105/1‑94 (MQ=60)

                                                               CATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAT                                >  SRR4302534.970758/1‑94 (MQ=60)

                                                               CATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACAT                                <  SRR4302534.3828890/94‑1 (MQ=60)

                                                                ATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATA                               >  SRR4302534.5890580/1‑94 (MQ=60)

                                                                ATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATA                               >  SRR4302534.5015821/1‑94 (MQ=60)

                                                                ATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATA                               <  SRR4302534.2694170/94‑1 (MQ=60)

                                                                ATTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTAAACAGCGAAGGACAGCCCCTTTTCGCCGTTGTCCGTGACAACATA                               >  SRR4302534.2619986/1‑94 (MQ=60)

                                                                 TTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAA                              >  SRR4302534.46516/1‑94 (MQ=60)

                                                                 TTTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAA                              <  SRR4302534.5287231/94‑1 (MQ=60)

                                                                  TTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAAC                             >  SRR4302534.258721/1‑94 (MQ=60)

                                                                  TTATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAAC                             <  SRR4302534.594221/94‑1 (MQ=60)

                                                                    ATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGC                           >  SRR4302534.6222990/1‑94 (MQ=60)

                                                                    ATTCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGC                           >  SRR4302534.2497215/1‑94 (MQ=60)

                                                                      TCAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAG                         <  SRR4302534.188821/94‑1 (MQ=60)

                                                                       CAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGT                        <  SRR4302534.99205/94‑1 (MQ=60)

                                                                       CAAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGT                        >  SRR4302534.838037/1‑94 (MQ=60)

                                                                        AAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTG                       >  SRR4302534.680275/1‑94 (MQ=60)

                                                                        AAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTG                       >  SRR4302534.5249831/1‑94 (MQ=60)

                                                                        AAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTG                       >  SRR4302534.4708612/1‑94 (MQ=60)

                                                                        AAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTG                       >  SRR4302534.6608925/1‑94 (MQ=60)

                                                                        AAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTG                       >  SRR4302534.4387075/1‑94 (MQ=60)

                                                                        AAACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTG                       >  SRR4302534.4184916/1‑94 (MQ=60)

                                                                         ACCCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGC                      <  SRR4302534.4232226/94‑1 (MQ=60)

                                                                         AACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGC                      >  SRR4302534.5322415/1‑94 (MQ=60)

                                                                          ACCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCA                     <  SRR4302534.5937903/94‑1 (MQ=60)

                                                                           CCTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCAC                    >  SRR4302534.6418121/1‑94 (MQ=60)

                                                                            CTTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACC                   <  SRR4302534.1049317/94‑1 (MQ=60)

                                                                             TTCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCT                  >  SRR4302534.5289755/1‑94 (MQ=60)

                                                                              TCAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTT                 >  SRR4302534.4172521/1‑94 (MQ=60)

                                                                               CAAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTC                >  SRR4302534.5510442/1‑94 (MQ=60)

                                                                                AAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCT               >  SRR4302534.4220335/1‑94 (MQ=60)

                                                                                AAGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCT               >  SRR4302534.4721523/1‑94 (MQ=60)

                                                                                 AGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTG              >  SRR4302534.718413/1‑94 (MQ=60)

                                                                                 AGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTG              >  SRR4302534.1952527/1‑94 (MQ=60)

                                                                                 AGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTG              <  SRR4302534.4066976/94‑1 (MQ=60)

                                                                                 AGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTG              <  SRR4302534.4595599/94‑1 (MQ=60)

                                                                                 AGCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTG              <  SRR4302534.3236842/94‑1 (MQ=60)

                                                                                  GCGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGT             >  SRR4302534.2490191/1‑94 (MQ=60)

                                                                                   CGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTC            >  SRR4302534.4412781/1‑94 (MQ=60)

                                                                                   CGATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTC            >  SRR4302534.3766102/1‑94 (MQ=60)

                                                                                    GCTTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCT           >  SRR4302534.3607366/1‑94 (MQ=60)

                                                                                    GATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCT           >  SRR4302534.1100308/1‑94 (MQ=60)

                                                                                    GATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCT           >  SRR4302534.731556/1‑94 (MQ=60)

                                                                                     ATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTC          <  SRR4302534.3580919/94‑1 (MQ=60)

                                                                                     ATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTC          >  SRR4302534.1361606/1‑94 (MQ=60)

                                                                                     ATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTC          >  SRR4302534.3058893/1‑94 (MQ=60)

                                                                                     ATTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTC          <  SRR4302534.4310300/94‑1 (MQ=60)

                                                                                      TTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCG         >  SRR4302534.172775/1‑94 (MQ=60)

                                                                                      TTCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCG         <  SRR4302534.6328548/94‑1 (MQ=60)

                                                                                       TCAGATGGCGCCAGCTTAATCGGTTCAGCAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGG        <  SRR4302534.658599/94‑1 (MQ=60)

                                                                                       TCAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGG        <  SRR4302534.5468006/94‑1 (MQ=60)

                                                                                        CAGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGT       <  SRR4302534.4872741/94‑1 (MQ=60)

                                                                                         AGATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTG      <  SRR4302534.2406462/94‑1 (MQ=60)

                                                                                          GATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGT     <  SRR4302534.929148/94‑1 (MQ=60)

                                                                                          GATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGT     >  SRR4302534.5813590/1‑94 (MQ=60)

                                                                                          GATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGT     >  SRR4302534.5399114/1‑94 (MQ=60)

                                                                                          GATGGCGCCAGCTTAATCGGTCCAACATCGAAGCTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCCGTCTCGGTGT     <  SRR4302534.249746/94‑1 (MQ=60)

                                                                                           ATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTA    <  SRR4302534.1939139/94‑1 (MQ=60)

                                                                                           ATGGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTA    <  SRR4302534.3162654/94‑1 (MQ=60)

                                                                                             GGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAAT  <  SRR4302534.912285/94‑1 (MQ=60)

CGCAGGGCAGCAGGTCTGTGAAACAGTATAGAGATTCATCGGCACAAAGGCTTTGCTTTTTGTCATTTATTCAAACCTTCAAGCGATTCAGATAGCGCCAGCTTAATCGGTTCAACAGCGAAGGTCAGCCCCTTTTCGCCGTTGTCCGCGACAACATAACGCAGTGCACCTTCTGTCTCGGTGTAAT  >  NC_000913/4109133‑4109319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`