Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,114,335	T→C	A156A (GCA→GCG)	glpK ←	glycerol kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,114,335	0	T	C	100.0%	900.6 / NA	257	A156A (GCA→GCG)	glpK	glycerol kinase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (130/127); total (130/127)

Only 100 of 264 total aligned reads displayed.

TTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCT  >  NC_000913/4114246‑4114424

ttGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCa                                                                                        >  1:560951/1‑93 (MQ=255)

ttGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCa                                                                                        <  1:4485701/93‑1 (MQ=255)

 tGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCAc                                                                                       <  1:3826161/93‑1 (MQ=255)

    tgtAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCt                                                                                    >  1:5005436/1‑93 (MQ=255)

     gtAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTc                                                                                   >  1:5707231/1‑93 (MQ=255)

     gtAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTc                                                                                   >  2:4669762/1‑93 (MQ=255)

      tAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTcg                                                                                  <  1:833274/93‑1 (MQ=255)

       aaTCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTcgc                                                                                 >  1:3866638/1‑93 (MQ=255)

         tCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCga                                                                               <  2:4069796/93‑1 (MQ=255)

            gTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGagag                                                                            >  2:1833768/1‑93 (MQ=255)

            gTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGagag                                                                            <  2:3058780/93‑1 (MQ=255)

               acaTGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCt                                                                         >  2:4160849/1‑93 (MQ=255)

               acaTGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCt                                                                         <  1:2087397/93‑1 (MQ=255)

               acaTGGACACGGCCCTGAGTCATTTACCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCt                                                                         <  2:6244689/93‑1 (MQ=255)

                  tGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTcc                                                                      >  2:5980462/1‑93 (MQ=255)

                   ggACACGGCGCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCca                                                                     <  1:3619190/93‑1 (MQ=255)

                   ggACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCCCGCTCGCGAGAGCCTTCca                                                                     >  1:1834167/1‑93 (MQ=255)

                   ggACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCca                                                                     >  1:6020764/1‑93 (MQ=255)

                     acacGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCcaca                                                                   >  2:2936907/1‑93 (MQ=255)

                     acacGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCcaca                                                                   >  2:2400111/1‑93 (MQ=255)

                       acGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATg                                                                 >  1:1704682/1‑93 (MQ=255)

                       acGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATg                                                                 <  2:1782764/93‑1 (MQ=255)

                       acGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATg                                                                 <  2:5242634/93‑1 (MQ=255)

                        cGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATgg                                                                <  1:337990/93‑1 (MQ=255)

                        cGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATgg                                                                >  1:3431615/1‑93 (MQ=255)

                         ggCCCTGAGTCATTTTCCAGATAAGCCACGTATCAAGCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGt                                                               >  2:3454896/1‑93 (MQ=255)

                         ggCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGt                                                               <  1:2376019/93‑1 (MQ=255)

                         cgCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGt                                                               <  2:1652525/92‑1 (MQ=255)

                             cTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAg                                                           >  2:5859881/1‑93 (MQ=255)

                              tGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCGATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAgg                                                          >  2:4173245/1‑93 (MQ=255)

                               gAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGa                                                         <  1:2852162/93‑1 (MQ=255)

                               gAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGa                                                         <  1:5804932/93‑1 (MQ=255)

                               gAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGa                                                         <  1:1373821/93‑1 (MQ=255)

                                aGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGAt                                                        <  1:6162610/93‑1 (MQ=255)

                                aGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGAt                                                        <  2:3589860/93‑1 (MQ=255)

                                 gTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATc                                                       >  1:3268799/1‑93 (MQ=255)

                                 gTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATc                                                       <  1:4842430/93‑1 (MQ=255)

                                    aTTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGTCGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcac                                                    <  2:3437195/93‑1 (MQ=255)

                                     ttttCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGAcccctt                                                   >  1:1294538/1‑90 (MQ=255)

                                     ttttCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcact                                                   >  1:4183920/1‑93 (MQ=255)

                                      tttCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcactt                                                  >  2:3208655/1‑93 (MQ=255)

                                      tttCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcactt                                                  <  1:4647666/93‑1 (MQ=255)

                                          cAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcacttcact                                              <  2:1031571/93‑1 (MQ=255)

                                           aGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcacttcactt                                             >  1:2989932/1‑93 (MQ=255)

                                           aGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcacttcactt                                             <  2:1341234/93‑1 (MQ=255)

                                           aGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcacttcactt                                             <  2:3069587/93‑1 (MQ=255)

                                           aGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcacttcactt                                             >  1:6262307/1‑93 (MQ=255)

                                            gATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACttt                                            >  2:219786/1‑93 (MQ=255)

                                            gATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACttt                                            >  1:1813230/1‑93 (MQ=255)

                                                 gCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGc                                       >  2:4242036/1‑93 (MQ=255)

                                                 gCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGc                                       >  1:787235/1‑93 (MQ=255)

                                                   cACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCa                                     >  2:5762320/1‑93 (MQ=255)

                                                    aCGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAg                                    >  2:6478665/1‑93 (MQ=255)

                                                      gTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGaa                                  <  1:2981855/93‑1 (MQ=255)

                                                       tATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGaaa                                 >  2:4985136/1‑93 (MQ=255)

                                                          cAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGt                              <  2:2718087/93‑1 (MQ=255)

                                                           aaCCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTa                             <  2:2683075/93‑1 (MQ=255)

                                                           aaCCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTa                             <  1:1911727/93‑1 (MQ=255)

                                                           aaCCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTa                             >  1:3140120/1‑93 (MQ=255)

                                                            aCCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTAc                            >  1:5337774/1‑93 (MQ=255)

                                                            aCCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTAc                            <  2:3895561/93‑1 (MQ=255)

                                                             ccGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACg                           >  2:763816/1‑93 (MQ=255)

                                                             ccGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACg                           <  1:398102/93‑1 (MQ=255)

                                                              cGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACgg                          <  2:6417181/93‑1 (MQ=255)

                                                              cGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACgg                          <  1:2474668/93‑1 (MQ=255)

                                                              cGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACgg                          <  1:668552/93‑1 (MQ=255)

                                                               gTACCAAACAGCAATTCGCCACGACGCGCACGCTCGCCAGAGCCTTCCACATGGTCGAGAATCCACTTTACTTTGGTGCCAGAAAAGTACggg                         <  2:542494/93‑1 (MQ=255)

                                                               gTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACggg                         <  1:2203690/93‑1 (MQ=255)

                                                               gTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACggg                         <  1:4312873/93‑1 (MQ=255)

                                                                tACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGt                        >  1:3012714/1‑93 (MQ=255)

                                                                 aCCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTc                       <  2:5815923/93‑1 (MQ=255)

                                                                 aCCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTc                       >  1:165075/1‑93 (MQ=255)

                                                                 aCCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTc                       >  1:5473536/1‑93 (MQ=255)

                                                                  ccAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCa                      <  2:5478801/93‑1 (MQ=255)

                                                                  ccAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCa                      >  1:2613697/1‑93 (MQ=255)

                                                                    aaaCAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAAt                    >  2:1256274/1‑93 (MQ=255)

                                                                    aaaCAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAAt                    >  2:2121491/1‑93 (MQ=255)

                                                                     aaCAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATc                   <  2:3122351/93‑1 (MQ=255)

                                                                       cAGCAATTCACCACGACGCGCACGCTGGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCAc                 <  1:5202105/93‑1 (MQ=255)

                                                                            aTTTACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGAc            >  1:5083941/1‑93 (MQ=255)

                                                                            aTTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGAc            >  1:1054155/1‑93 (MQ=255)

                                                                            aTTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGAc            <  2:4022837/93‑1 (MQ=255)

                                                                            aTTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGAc            <  1:3303808/93‑1 (MQ=255)

                                                                              tCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCg          <  1:2298813/93‑1 (MQ=255)

                                                                              tCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCg          >  1:5973185/1‑93 (MQ=255)

                                                                               caccacGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCgg         <  2:6101769/93‑1 (MQ=255)

                                                                                accacGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGt        >  2:1410449/1‑93 (MQ=255)

                                                                                  cacGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTAt      <  1:988595/93‑1 (MQ=255)

                                                                                  cacGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTAt      <  2:2810267/93‑1 (MQ=255)

                                                                                   acgacgCTCACGCCCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTAtt     <  1:1156841/93‑1 (MQ=255)

                                                                                   acgacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTAtt     >  1:6110400/1‑93 (MQ=255)

                                                                                   acgacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTAtt     >  2:1497008/1‑93 (MQ=255)

                                                                                    cgacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtg    >  1:4867210/1‑93 (MQ=255)

                                                                                    cgacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAACCACCAGACCGGTATtg    <  1:1728587/93‑1 (MQ=255)

                                                                                     gacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtgc   >  2:4620381/1‑93 (MQ=255)

                                                                                     gacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtgc   >  2:5806893/1‑93 (MQ=255)

                                                                                     gacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtgc   <  2:1096064/93‑1 (MQ=255)

                                                                                     gacgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtgc   <  2:200584/93‑1 (MQ=255)

                                                                                      acgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtgct  >  2:5183200/1‑93 (MQ=255)

                                                                                      acgCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtgct  <  1:2723505/93‑1 (MQ=255)

TTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCT  >  NC_000913/4114246‑4114424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCG  >  NC_000913/4114242‑4114427

GGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGC                                                                                              <  SRR4302534.2756996/94‑1 (MQ=60)

GGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGC                                                                                              >  SRR4302534.5805140/1‑94 (MQ=60)

 GCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCG                                                                                             >  SRR4302534.2387998/1‑94 (MQ=60)

   GTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCA                                                                                           >  SRR4302534.574754/1‑94 (MQ=60)

   GTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCA                                                                                           >  SRR4302534.4246769/1‑94 (MQ=60)

    TTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCAC                                                                                          <  SRR4302534.4607073/94‑1 (MQ=60)

     TGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACG                                                                                         <  SRR4302534.1880165/94‑1 (MQ=60)

     TGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACG                                                                                         <  SRR4302534.3928945/94‑1 (MQ=60)

       GTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCT                                                                                       >  SRR4302534.5140737/1‑94 (MQ=60)

        TGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTC                                                                                      <  SRR4302534.1282725/94‑1 (MQ=60)

        TGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTC                                                                                      >  SRR4302534.5861836/1‑94 (MQ=60)

        TGTAATCGGTCACATGGACACGGACCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTC                                                                                      <  SRR4302534.3082258/94‑1 (MQ=60)

         GTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCG                                                                                     <  SRR4302534.5756606/94‑1 (MQ=60)

          TAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGC                                                                                    <  SRR4302534.854237/94‑1 (MQ=60)

          TAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGC                                                                                    >  SRR4302534.3970453/1‑94 (MQ=60)

           AATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCG                                                                                   >  SRR4302534.2921902/1‑94 (MQ=60)

           AATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCG                                                                                   >  SRR4302534.6229743/1‑94 (MQ=60)

             TCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAG                                                                                 <  SRR4302534.5227065/94‑1 (MQ=60)

               GGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAG                                                                               <  SRR4302534.2255481/94‑1 (MQ=60)

               GGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAG                                                                               >  SRR4302534.1771975/1‑94 (MQ=60)

                 TCACATGGACGCGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTGCCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCC                                                                             <  SRR4302534.370297/94‑1 (MQ=60)

                 TCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCC                                                                             <  SRR4302534.1860161/94‑1 (MQ=60)

                   ACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTT                                                                           <  SRR4302534.4546168/94‑1 (MQ=60)

                   ACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTT                                                                           <  SRR4302534.2142108/94‑1 (MQ=60)

                    CATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTC                                                                          >  SRR4302534.3328561/1‑94 (MQ=60)

                      TGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCCCGCTCGCGAGAGCCTTCCA                                                                        >  SRR4302534.1881856/1‑94 (MQ=60)

                      TGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCA                                                                        >  SRR4302534.6302344/1‑94 (MQ=60)

                      TGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCA                                                                        >  SRR4302534.6184385/1‑94 (MQ=60)

                       GGACTCGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCAC                                                                       <  SRR4302534.5140252/94‑1 (MQ=60)

                       GGACACGGCGCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCAC                                                                       <  SRR4302534.3716494/94‑1 (MQ=60)

                          CACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATG                                                                    <  SRR4302534.3801731/94‑1 (MQ=60)

                          CACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATG                                                                    >  SRR4302534.1748974/1‑94 (MQ=60)

                           ACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGG                                                                   >  SRR4302534.3523817/1‑94 (MQ=60)

                           ACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGG                                                                   <  SRR4302534.1742302/94‑1 (MQ=60)

                           ACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGG                                                                   <  SRR4302534.3332622/94‑1 (MQ=60)

                           ACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGG                                                                   <  SRR4302534.6128513/94‑1 (MQ=60)

                            CGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGT                                                                  <  SRR4302534.346635/94‑1 (MQ=60)

                            CGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGT                                                                  >  SRR4302534.2403835/1‑94 (MQ=60)

                             GGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTC                                                                 <  SRR4302534.2439117/94‑1 (MQ=60)

                             GGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTC                                                                 <  SRR4302534.5500220/94‑1 (MQ=60)

                             GGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTC                                                                 >  SRR4302534.1261782/1‑94 (MQ=60)

                             GGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTC                                                                 <  SRR4302534.4651124/94‑1 (MQ=60)

                                CCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAG                                                              >  SRR4302534.5466743/1‑94 (MQ=60)

                                 CTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGG                                                             <  SRR4302534.4984753/94‑1 (MQ=60)

                                  TGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGA                                                            >  SRR4302534.747913/1‑94 (MQ=60)

                                   GAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGAT                                                           <  SRR4302534.1410018/94‑1 (MQ=60)

                                   GAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGAT                                                           <  SRR4302534.5962479/94‑1 (MQ=60)

                                   GAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGAT                                                           <  SRR4302534.2927091/94‑1 (MQ=60)

                                    AGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATC                                                          <  SRR4302534.6330231/94‑1 (MQ=60)

                                    AGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATC                                                          >  SRR4302534.3355864/1‑94 (MQ=60)

                                    AGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATC                                                          <  SRR4302534.4407011/94‑1 (MQ=60)

                                    AGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATC                                                          >  SRR4302534.1891408/1‑94 (MQ=60)

                                     GTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGCTCC                                                         >  SRR4302534.6324304/1‑94 (MQ=60)

                                     GTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCC                                                         <  SRR4302534.2062326/94‑1 (MQ=60)

                                     GTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCC                                                         <  SRR4302534.4973816/94‑1 (MQ=60)

                                     GTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCC                                                         <  SRR4302534.5225004/94‑1 (MQ=60)

                                      TCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCA                                                        >  SRR4302534.3999182/1‑94 (MQ=60)

                                      TCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCA                                                        <  SRR4302534.620848/94‑1 (MQ=60)

                                       CATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCAC                                                       >  SRR4302534.2617078/1‑94 (MQ=60)

                                        ATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGAcccctt                                                      >  SRR4302534.1328625/1‑88 (MQ=60)

                                        ATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACT                                                      >  SRR4302534.4296996/1‑94 (MQ=60)

                                        ATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACT                                                      <  SRR4302534.305098/94‑1 (MQ=60)

                                        ATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACT                                                      <  SRR4302534.5522837/94‑1 (MQ=60)

                                          TTTCCAGATAAGCCACGTATCAGCCGTACCAAACAGCAATTCACCGCGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTC                                                    <  SRR4302534.2289469/94‑1 (MQ=60)

                                          TTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTC                                                    <  SRR4302534.4773828/94‑1 (MQ=60)

                                            TCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCAC                                                  >  SRR4302534.2075510/1‑94 (MQ=60)

                                             CCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACT                                                 >  SRR4302534.1814331/1‑94 (MQ=60)

                                             CCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACT                                                 >  SRR4302534.2677409/1‑94 (MQ=60)

                                              CAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTT                                                >  SRR4302534.991465/1‑94 (MQ=60)

                                              CAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTT                                                >  SRR4302534.6431935/1‑94 (MQ=60)

                                              CAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTT                                                >  SRR4302534.5702823/1‑94 (MQ=60)

                                              CAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTT                                                >  SRR4302534.3358309/1‑94 (MQ=60)

                                              CAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTT                                                >  SRR4302534.3068101/1‑94 (MQ=60)

                                               AGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTT                                               >  SRR4302534.1860331/1‑94 (MQ=60)

                                               AGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCAACTTCATTTT                                               >  SRR4302534.3203615/1‑94 (MQ=60)

                                                  TAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGT                                            >  SRR4302534.2952883/1‑94 (MQ=60)

                                                   AAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTG                                           <  SRR4302534.2230308/94‑1 (MQ=60)

                                                   AAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTG                                           >  SRR4302534.955973/1‑94 (MQ=60)

                                                    AGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGC                                          >  SRR4302534.806953/1‑94 (MQ=60)

                                                      CCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCA                                        <  SRR4302534.5918650/94‑1 (MQ=60)

                                                      CCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCA                                        <  SRR4302534.5974524/94‑1 (MQ=60)

                                                      CCACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCA                                        >  SRR4302534.6593118/1‑94 (MQ=60)

                                                       CACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAG                                       >  SRR4302534.3482906/1‑94 (MQ=60)

                                                        ACGTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGA                                      <  SRR4302534.3102607/94‑1 (MQ=60)

                                                          GTATCACCCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAA                                    <  SRR4302534.2778857/94‑1 (MQ=60)

                                                          GTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAA                                    <  SRR4302534.3059878/94‑1 (MQ=60)

                                                          GTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAA                                    <  SRR4302534.1666449/94‑1 (MQ=60)

                                                          GTATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAA                                    <  SRR4302534.1432563/94‑1 (MQ=60)

                                                           TATCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAA                                   >  SRR4302534.3742764/1‑94 (MQ=60)

                                                             TCAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGT                                 <  SRR4302534.5956331/94‑1 (MQ=60)

                                                              CAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCGACCTCACTTTGGTTCCAGAAAAGTA                                >  SRR4302534.4742031/1‑94 (MQ=60)

                                                              CAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTA                                >  SRR4302534.3062211/1‑94 (MQ=60)

                                                              CAACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTA                                >  SRR4302534.3222703/1‑94 (MQ=60)

                                                               AACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTAC                               <  SRR4302534.1961626/94‑1 (MQ=60)

                                                               AACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTAC                               >  SRR4302534.3061178/1‑94 (MQ=60)

                                                               AACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTAC                               >  SRR4302534.5481688/1‑94 (MQ=60)

                                                                ACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTGCG                              <  SRR4302534.3438660/94‑1 (MQ=60)

                                                                ACCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACG                              <  SRR4302534.6162069/94‑1 (MQ=60)

                                                                 CCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGG                             <  SRR4302534.823055/94‑1 (MQ=60)

                                                                 CCGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGG                             <  SRR4302534.408285/94‑1 (MQ=60)

                                                                  CGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGG                            >  SRR4302534.4085731/1‑94 (MQ=60)

                                                                  CGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGG                            <  SRR4302534.684842/94‑1 (MQ=60)

                                                                  CGTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGG                            <  SRR4302534.2540420/94‑1 (MQ=60)

                                                                   GTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGT                           >  SRR4302534.1139713/1‑94 (MQ=60)

                                                                   GTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGT                           >  SRR4302534.3091565/1‑94 (MQ=60)

                                                                   GTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGT                           <  SRR4302534.2262002/94‑1 (MQ=60)

                                                                   GTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGT                           <  SRR4302534.4429700/94‑1 (MQ=60)

                                                                   GTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGT                           >  SRR4302534.4558710/1‑94 (MQ=60)

                                                                   GTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGT                           >  SRR4302534.3930794/1‑94 (MQ=60)

                                                                   GTACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGT                           >  SRR4302534.4987574/1‑94 (MQ=60)

                                                                    TACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTC                          >  SRR4302534.169404/1‑94 (MQ=60)

                                                                    TACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTC                          >  SRR4302534.5621111/1‑94 (MQ=60)

                                                                     ACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCA                         >  SRR4302534.689611/1‑94 (MQ=60)

                                                                     ACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCA                         >  SRR4302534.2682864/1‑94 (MQ=60)

                                                                     ACCAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCA                         >  SRR4302534.3445287/1‑94 (MQ=60)

                                                                       CAAACAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAAT                       >  SRR4302534.187654/1‑94 (MQ=60)

                                                                           CAGCAATTCACCACGACGCGCACGCTGGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACC                   <  SRR4302534.5342439/94‑1 (MQ=60)

                                                                           CAGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACC                   <  SRR4302534.6431854/94‑1 (MQ=60)

                                                                            AGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCA                  <  SRR4302534.2395517/94‑1 (MQ=60)

                                                                            AGCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCA                  >  SRR4302534.4124723/1‑94 (MQ=60)

                                                                             GCAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAG                 <  SRR4302534.5850396/94‑1 (MQ=60)

                                                                              CAATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGA                <  SRR4302534.1365092/94‑1 (MQ=60)

                                                                               AATTTACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGAC               >  SRR4302534.5221157/1‑94 (MQ=60)

                                                                               AATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGAC               >  SRR4302534.1081439/1‑94 (MQ=60)

                                                                               AATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGAC               <  SRR4302534.2449233/94‑1 (MQ=60)

                                                                                ATTCACCACGCCGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACC              <  SRR4302534.3474218/94‑1 (MQ=60)

                                                                                ATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACC              <  SRR4302534.6469204/94‑1 (MQ=60)

                                                                                ATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACC              <  SRR4302534.3392001/94‑1 (MQ=60)

                                                                                ATTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACC              <  SRR4302534.5141617/94‑1 (MQ=60)

                                                                                 TTCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCG             >  SRR4302534.6135415/1‑94 (MQ=60)

                                                                                  TCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGG            <  SRR4302534.2359831/94‑1 (MQ=60)

                                                                                  TCACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGG            <  SRR4302534.5139522/94‑1 (MQ=60)

                                                                                   CACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGT           >  SRR4302534.2793826/1‑94 (MQ=60)

                                                                                    ACCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTA          >  SRR4302534.4860605/1‑94 (MQ=60)

                                                                                     CCACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTAT         >  SRR4302534.1019048/1‑94 (MQ=60)

                                                                                      CACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATT        >  SRR4302534.6276594/1‑94 (MQ=60)

                                                                                      CACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATT        <  SRR4302534.1013877/94‑1 (MQ=60)

                                                                                       ACGACGCTCACGCCCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTG       <  SRR4302534.1187176/94‑1 (MQ=60)

                                                                                       ACGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTG       >  SRR4302534.4999237/1‑94 (MQ=60)

                                                                                        CGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGC      >  SRR4302534.1728126/1‑94 (MQ=60)

                                                                                        CGACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAACCACCAGACCGGTATTGC      <  SRR4302534.1773470/94‑1 (MQ=60)

                                                                                          ACGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTG    <  SRR4302534.2795364/94‑1 (MQ=60)

                                                                                           CGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGC   <  SRR4302534.1132086/94‑1 (MQ=60)

                                                                                           CGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGC   <  SRR4302534.2874383/94‑1 (MQ=60)

                                                                                           CGCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGC   >  SRR4302534.6016257/1‑94 (MQ=60)

                                                                                            GCGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCG  <  SRR4302534.2219067/94‑1 (MQ=60)

GGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCG  >  NC_000913/4114242‑4114427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`