Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,228,096	A→G	N55S (AAC→AGC)	yjbC →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,228,096	0	A	G	100.0%	820.5 / NA	232	N55S (AAC→AGC)	yjbC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (123/109); total (123/109)

Only 100 of 238 total aligned reads displayed.

ATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAACGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATG  >  NC_000913/4228006‑4228185

aTCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCg                                                                                         <  2:4498587/93‑1 (MQ=255)

  cGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGt                                                                                       <  2:3433635/93‑1 (MQ=255)

  cGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGt                                                                                       <  2:5964807/93‑1 (MQ=255)

  cGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGt                                                                                       <  2:5494733/93‑1 (MQ=255)

    cTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCa                                                                                     <  1:2057770/93‑1 (MQ=255)

     tataTCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAg                                                                                    >  1:3388341/1‑93 (MQ=255)

     tataTCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAg                                                                                    <  1:2782289/93‑1 (MQ=255)

     tataTCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAg                                                                                    >  2:3176293/1‑93 (MQ=255)

     tataTCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAg                                                                                    <  2:4959806/93‑1 (MQ=255)

      atatCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGt                                                                                   >  1:3661117/1‑93 (MQ=255)

      atatCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGt                                                                                   <  2:3368681/93‑1 (MQ=255)

      atatCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGt                                                                                   <  1:5830313/93‑1 (MQ=255)

       tatCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGtt                                                                                  >  1:2483243/1‑93 (MQ=255)

          cGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGttgat                                                                               <  2:4223505/93‑1 (MQ=255)

            aGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGttgattg                                                                             >  1:5964620/1‑93 (MQ=255)

             gCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGttgattga                                                                            >  2:2019925/1‑93 (MQ=255)

             gCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGttgattga                                                                            >  1:675036/1‑93 (MQ=255)

             gCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGttgattga                                                                            >  1:3439754/1‑93 (MQ=255)

               aaGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAAc                                                                          <  2:4355745/93‑1 (MQ=255)

               aaGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAAc                                                                          >  1:1293772/1‑93 (MQ=255)

                aGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAAcc                                                                         >  2:6051468/1‑93 (MQ=255)

                aGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAAcc                                                                         >  2:3286332/1‑93 (MQ=255)

                  gCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTc                                                                       >  1:217891/1‑93 (MQ=255)

                   cAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCg                                                                      <  1:2811631/93‑1 (MQ=255)

                   cAATGTGTTCCTGAAGGCCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCg                                                                      <  1:1401241/93‑1 (MQ=255)

                    aaTGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGCCGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCgg                                                                     <  1:5377592/93‑1 (MQ=255)

                    aaTGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCgg                                                                     >  2:6065690/1‑93 (MQ=255)

                    aaTGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCgg                                                                     >  1:1080239/1‑93 (MQ=255)

                    aaTGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCgg                                                                     >  1:1046572/1‑93 (MQ=255)

                     aTGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCggg                                                                    >  1:4866231/1‑93 (MQ=255)

                       gtgtTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGaa                                                                  >  2:236998/1‑93 (MQ=255)

                        tgtTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAg                                                                 >  1:275798/1‑93 (MQ=255)

                          ttCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTGAGCGGTCAGTTGATTGAACCTCGGGAAGcc                                                               <  2:5918719/93‑1 (MQ=255)

                            ccTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGa                                                             >  2:4382143/1‑93 (MQ=255)

                            ccTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGa                                                             <  2:1464097/93‑1 (MQ=255)

                             cTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGaa                                                            <  2:3912812/93‑1 (MQ=255)

                              ttAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAg                                                           <  2:844392/93‑1 (MQ=255)

                               tAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGa                                                          <  2:5469550/93‑1 (MQ=255)

                                aaTGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGAt                                                         >  1:1006024/1‑93 (MQ=255)

                                  tGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGAttt                                                       <  1:2694557/93‑1 (MQ=255)

                                   ggCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTg                                                      >  2:631838/1‑93 (MQ=255)

                                    gCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTgg                                                     <  1:1473754/93‑1 (MQ=255)

                                     cAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGt                                                    <  1:5718806/93‑1 (MQ=255)

                                     cAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGt                                                    >  2:2446420/1‑93 (MQ=255)

                                      aaGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGtg                                                   >  2:6197262/1‑92 (MQ=255)

                                       agggAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTAc                                                  <  1:4816220/90‑1 (MQ=255)

                                       aGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTAc                                                  >  1:3190860/1‑93 (MQ=255)

                                          gAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGCAGCAGAAGATTTGGTACTTa                                               >  2:2957536/1‑93 (MQ=255)

                                          gAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGCTTTGGTATTTa                                               >  1:2423127/1‑93 (MQ=255)

                                           aGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTAt                                              >  1:2488249/1‑93 (MQ=255)

                                           aGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTAt                                              <  2:486702/93‑1 (MQ=255)

                                            gCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATc                                             <  1:6131732/93‑1 (MQ=255)

                                            gCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATc                                             >  2:5628748/1‑93 (MQ=255)

                                               accaTTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGcc                                          >  1:5251350/1‑93 (MQ=255)

                                               accaTTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGcc                                          >  1:4610286/1‑93 (MQ=255)

                                                ctaTTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGAAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGccc                                         <  1:3866788/91‑1 (MQ=255)

                                                ccaTTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGccc                                         <  2:380167/93‑1 (MQ=255)

                                                ccaTTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGccc                                         >  2:1785630/1‑93 (MQ=255)

                                                 caTTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCt                                        <  1:4124985/93‑1 (MQ=255)

                                                 caTTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCt                                        <  2:1345644/93‑1 (MQ=255)

                                                     ggCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAAc                                    >  1:494486/1‑93 (MQ=255)

                                                      gCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACa                                   <  1:2967976/93‑1 (MQ=255)

                                                       cGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACaa                                  <  1:2596780/93‑1 (MQ=255)

                                                        gATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAg                                 >  2:6411286/1‑93 (MQ=255)

                                                        gATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAg                                 <  2:5784503/93‑1 (MQ=255)

                                                        gATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAg                                 >  2:1661705/1‑93 (MQ=255)

                                                         aTCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGc                                >  1:3085196/1‑93 (MQ=255)

                                                         aTCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGc                                >  2:1267260/1‑93 (MQ=255)

                                                          tCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGcc                               <  2:117423/93‑1 (MQ=255)

                                                           cAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGccc                              <  2:2812620/93‑1 (MQ=255)

                                                            aGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCg                             >  1:1819861/1‑93 (MQ=255)

                                                             ggTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGt                            <  1:1983504/93‑1 (MQ=255)

                                                              gTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGtt                           <  2:4644767/93‑1 (MQ=255)

                                                               tGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTg                          <  2:5106969/93‑1 (MQ=255)

                                                               tGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTg                          >  1:74455/1‑93 (MQ=255)

                                                               tGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTg                          >  1:3522999/1‑93 (MQ=255)

                                                                gAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGGCCGTTgg                         >  2:4444145/1‑93 (MQ=255)

                                                                gAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTgg                         >  1:4310296/1‑93 (MQ=255)

                                                                 aaaCCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGt                        >  1:4707854/1‑93 (MQ=255)

                                                                 aaaCCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGt                        >  1:842077/1‑93 (MQ=255)

                                                                     ccGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTg                    <  2:4160614/93‑1 (MQ=255)

                                                                       ggCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTa                  <  2:3649010/93‑1 (MQ=255)

                                                                       ggCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTa                  >  2:3229444/1‑93 (MQ=255)

                                                                        gCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGTTACTTATCGCCCTGAACAAGCCCGTTGATATTGTaa                 <  1:6299233/93‑1 (MQ=255)

                                                                           aCGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGca              >  1:1689441/1‑93 (MQ=255)

                                                                           aCGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGca              >  2:2176245/1‑93 (MQ=255)

                                                                             gTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGcacc            >  2:5078650/1‑93 (MQ=255)

                                                                             gTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGcacc            <  1:817508/93‑1 (MQ=255)

                                                                             gTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGcacc            <  1:5219840/93‑1 (MQ=255)

                                                                             gTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGATGGTATTGTAAGcacc            >  2:2689580/1‑93 (MQ=255)

                                                                              ttGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGcacca           <  1:4777883/93‑1 (MQ=255)

                                                                              ttGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGcacca           >  2:234557/1‑93 (MQ=255)

                                                                                   aaaGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGaa      <  1:5911968/93‑1 (MQ=255)

                                                                                    aaGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGGACCACCGAAg     >  2:5309795/1‑93 (MQ=255)

                                                                                    aaGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAg     >  2:405415/1‑93 (MQ=255)

                                                                                    aaGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAg     >  2:2510066/1‑93 (MQ=255)

                                                                                    aaGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAg     >  1:56337/1‑93 (MQ=255)

                                                                                    aaGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAg     >  1:5424120/1‑93 (MQ=255)

                                                                                       tAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATg  <  2:2559832/93‑1 (MQ=255)

                                                                                       tAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATg  <  2:6335056/93‑1 (MQ=255)

ATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAACGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATG  >  NC_000913/4228006‑4228185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAACGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATGGCG  >  NC_000913/4228003‑4228188

CGGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAG                                                                                              <  SRR4302534.353072/94‑1 (MQ=60)

CGGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAG                                                                                              >  SRR4302534.3832716/1‑94 (MQ=60)

CGGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAG                                                                                              >  SRR4302534.1567032/1‑94 (MQ=60)

CGGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAG                                                                                              >  SRR4302534.1541366/1‑94 (MQ=60)

 GGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGC                                                                                             >  SRR4302534.6464983/1‑94 (MQ=60)

 GGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGC                                                                                             <  SRR4302534.5785367/94‑1 (MQ=60)

  GATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCG                                                                                            >  SRR4302534.2641942/1‑94 (MQ=60)

  GATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCG                                                                                            >  SRR4302534.333895/1‑94 (MQ=60)

  GATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCG                                                                                            >  SRR4302534.2032370/1‑94 (MQ=60)

    TCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGT                                                                                          >  SRR4302534.285466/1‑94 (MQ=60)

       CTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAG                                                                                       >  SRR4302534.3479221/1‑94 (MQ=60)

       CTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAG                                                                                       <  SRR4302534.2111520/94‑1 (MQ=60)

        TATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGT                                                                                      <  SRR4302534.2855463/94‑1 (MQ=60)

        TATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGT                                                                                      >  SRR4302534.3759515/1‑94 (MQ=60)

         ATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTT                                                                                     <  SRR4302534.4247270/94‑1 (MQ=60)

         ATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTT                                                                                     >  SRR4302534.2549189/1‑94 (MQ=60)

         ATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTT                                                                                     <  SRR4302534.5988572/94‑1 (MQ=60)

           ATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGA                                                                                   <  SRR4302534.4894660/94‑1 (MQ=60)

             CGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATT                                                                                 >  SRR4302534.5451663/1‑94 (MQ=60)

             CGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATT                                                                                 <  SRR4302534.5813384/94‑1 (MQ=60)

             CGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATT                                                                                 >  SRR4302534.3120749/1‑94 (MQ=60)

             CGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATT                                                                                 >  SRR4302534.2014243/1‑94 (MQ=60)

              GAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTG                                                                                >  SRR4302534.6126585/1‑94 (MQ=60)

               AGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGA                                                                               >  SRR4302534.691499/1‑94 (MQ=60)

               AGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGA                                                                               >  SRR4302534.3532204/1‑94 (MQ=60)

               AGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGA                                                                               >  SRR4302534.2552275/1‑94 (MQ=60)

               AGAAAGGCATTGTGTTCCTTAATGGCAAGCGAGCAACCATTGGCGATCAGGTGAAACCCGGCGACGTTGCGGAAGTACGCGGTCAGGTGATTGA                                                                               >  SRR4302534.2107269/1‑94 (MQ=60)

                 CAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAAC                                                                             >  SRR4302534.1327840/1‑94 (MQ=60)

                  AAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACC                                                                            <  SRR4302534.603432/94‑1 (MQ=60)

                  AAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACC                                                                            <  SRR4302534.3035172/94‑1 (MQ=60)

                   AGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAGAGTAAGCGGTCAGTTGATTGAACCT                                                                           <  SRR4302534.4741584/94‑1 (MQ=60)

                    GGCAATGTGTTCCTTAATGGCAAGCGAGTCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTC                                                                          >  SRR4302534.6582017/1‑94 (MQ=60)

                    GGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTC                                                                          >  SRR4302534.223605/1‑94 (MQ=60)

                      CAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGG                                                                        >  SRR4302534.1073632/1‑94 (MQ=60)

                      CAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGG                                                                        <  SRR4302534.2885555/94‑1 (MQ=60)

                      CAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGG                                                                        >  SRR4302534.764634/1‑94 (MQ=60)

                      CAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGG                                                                        >  SRR4302534.1108315/1‑94 (MQ=60)

                      CAATGTGTTCCTGAAGGCCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGG                                                                        <  SRR4302534.1438095/94‑1 (MQ=60)

                       AATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGCCGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGG                                                                       <  SRR4302534.5522482/94‑1 (MQ=60)

                       AATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGG                                                                       >  SRR4302534.4998231/1‑94 (MQ=60)

                         TGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAA                                                                     >  SRR4302534.1520698/1‑94 (MQ=60)

                          GTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAG                                                                    >  SRR4302534.282942/1‑94 (MQ=60)

                            TTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCC                                                                  <  SRR4302534.4907670/94‑1 (MQ=60)

                            GTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCC                                                                  <  SRR4302534.5555455/94‑1 (MQ=60)

                            GTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCC                                                                  <  SRR4302534.6096683/94‑1 (MQ=60)

                                CTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAGCCTCGGGAAGCCGAAG                                                              <  SRR4302534.5374862/94‑1 (MQ=60)

                                CTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAG                                                              >  SRR4302534.2548239/1‑94 (MQ=60)

                                CTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAG                                                              >  SRR4302534.2158912/1‑94 (MQ=60)

                                 TTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGA                                                             <  SRR4302534.6090763/94‑1 (MQ=60)

                                  TAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGAT                                                            >  SRR4302534.1031830/1‑94 (MQ=60)

                                    ATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTT                                                          >  SRR4302534.1078790/1‑94 (MQ=60)

                                     TGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTG                                                         <  SRR4302534.2765757/94‑1 (MQ=60)

                                     TGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTG                                                         <  SRR4302534.357520/94‑1 (MQ=60)

                                       GCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGT                                                       <  SRR4302534.5409923/94‑1 (MQ=60)

                                       GCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGT                                                       <  SRR4302534.1512526/94‑1 (MQ=60)

                                        CAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTA                                                      <  SRR4302534.5873745/94‑1 (MQ=60)

                                         AAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTAC                                                     >  SRR4302534.3275349/1‑94 (MQ=60)

                                         AAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTAC                                                     >  SRR4302534.1156799/1‑94 (MQ=60)

                                         AAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTAC                                                     >  SRR4302534.1040801/1‑94 (MQ=60)

                                          AGGGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACT                                                    <  SRR4302534.4946953/94‑1 (MQ=60)

                                          AGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACT                                                    <  SRR4302534.3531653/94‑1 (MQ=60)

                                            CGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGCTTTGGTATTTA                                                  >  SRR4302534.2487567/1‑94 (MQ=60)

                                            CGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTA                                                  >  SRR4302534.962098/1‑94 (MQ=60)

                                             GAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTAT                                                 >  SRR4302534.2554354/1‑94 (MQ=60)

                                              AGCAACCATTGGCGATCAGGGGAAACCCGGCGACGTTGTGAAAGTAAGCGGGCAGTTGATTGAACCTCGGGCAGTCGAAGCATTTGTACTTATC                                                >  SRR4302534.5885246/1‑94 (MQ=60)

                                               GCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCG                                               >  SRR4302534.2815073/1‑94 (MQ=60)

                                               GCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCG                                               <  SRR4302534.6298531/94‑1 (MQ=60)

                                                 CACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCC                                             >  SRR4302534.5393236/1‑94 (MQ=60)

                                                 CACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCC                                             >  SRR4302534.4735421/1‑94 (MQ=60)

                                                  ACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCC                                            >  SRR4302534.1605985/1‑94 (MQ=60)

                                                  ACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCC                                            >  SRR4302534.3764351/1‑94 (MQ=60)

                                                  ACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCC                                            >  SRR4302534.5691369/1‑94 (MQ=60)

                                                   CTATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGAAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCT                                           <  SRR4302534.3970606/94‑1 (MQ=60)

                                                   CCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCT                                           <  SRR4302534.3708029/94‑1 (MQ=60)

                                                    CATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTG                                          <  SRR4302534.2069049/94‑1 (MQ=60)

                                                    CATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTG                                          >  SRR4302534.4136902/1‑94 (MQ=60)

                                                    CATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTG                                          <  SRR4302534.4236022/94‑1 (MQ=60)

                                                      TTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAA                                        <  SRR4302534.5926659/94‑1 (MQ=60)

                                                       TGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAAC                                       >  SRR4302534.506824/1‑94 (MQ=60)

                                                         GCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAA                                     <  SRR4302534.3045701/94‑1 (MQ=60)

                                                          CGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAG                                    <  SRR4302534.2665502/94‑1 (MQ=60)

                                                           GATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGC                                   >  SRR4302534.3166273/1‑94 (MQ=60)

                                                            ATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGACCCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCC                                  <  SRR4302534.804386/94‑1 (MQ=60)

                                                            ATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCC                                  >  SRR4302534.2781749/1‑94 (MQ=60)

                                                             TCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCC                                 <  SRR4302534.4537804/94‑1 (MQ=60)

                                                             TCAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCC                                 <  SRR4302534.521609/94‑1 (MQ=60)

                                                              CAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCG                                >  SRR4302534.1147736/1‑94 (MQ=60)

                                                              CAGGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCG                                >  SRR4302534.1867160/1‑94 (MQ=60)

                                                                GGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTT                              <  SRR4302534.2035443/94‑1 (MQ=60)

                                                                GGTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTT                              <  SRR4302534.5019947/94‑1 (MQ=60)

                                                                 GTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTG                             >  SRR4302534.3617754/1‑94 (MQ=60)

                                                                 GTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTG                             <  SRR4302534.2242996/94‑1 (MQ=60)

                                                                 GTGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTG                             >  SRR4302534.76475/1‑94 (MQ=60)

                                                                  TGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGG                            >  SRR4302534.4427072/1‑94 (MQ=60)

                                                                  TGAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGG                            >  SRR4302534.4589336/1‑94 (MQ=60)

                                                                   GAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGT                           <  SRR4302534.8535/94‑1 (MQ=60)

                                                                   GAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGT                           >  SRR4302534.863292/1‑94 (MQ=60)

                                                                   GAAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGT                           >  SRR4302534.4835665/1‑94 (MQ=60)

                                                                    AAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTA                          <  SRR4302534.1474124/94‑1 (MQ=60)

                                                                    AAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTA                          >  SRR4302534.1859023/1‑94 (MQ=60)

                                                                    AAACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTA                          >  SRR4302534.4972672/1‑94 (MQ=60)

                                                                     AACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTAT                         >  SRR4302534.5790830/1‑94 (MQ=60)

                                                                      ACCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATT                        <  SRR4302534.3607950/94‑1 (MQ=60)

                                                                       CCCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTG                       <  SRR4302534.6427945/94‑1 (MQ=60)

                                                                        CCGGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGT                      >  SRR4302534.2852157/1‑94 (MQ=60)

                                                                          GGCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAA                    >  SRR4302534.3418779/1‑94 (MQ=60)

                                                                           GCGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGTTACTTATCGCCCTGAACAAGCCCGTTGATATTGTAAG                   <  SRR4302534.6469592/94‑1 (MQ=60)

                                                                            CGACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGC                  >  SRR4302534.3211193/1‑94 (MQ=60)

                                                                             GACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCA                 >  SRR4302534.936156/1‑94 (MQ=60)

                                                                             GACGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCA                 >  SRR4302534.1733364/1‑94 (MQ=60)

                                                                              GCGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCAC                <  SRR4302534.6416961/94‑1 (MQ=60)

                                                                               CGTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACC               >  SRR4302534.5303113/1‑94 (MQ=60)

                                                                                GTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCA              <  SRR4302534.5360734/94‑1 (MQ=60)

                                                                                GTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCA              >  SRR4302534.4934001/1‑94 (MQ=60)

                                                                                GTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCA              <  SRR4302534.838063/94‑1 (MQ=60)

                                                                                GTTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCA              <  SRR4302534.2728423/94‑1 (MQ=60)

                                                                                 TTGTGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCAC             <  SRR4302534.4907626/94‑1 (MQ=60)

                                                                                    TGAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGA          <  SRR4302534.2320828/94‑1 (MQ=60)

                                                                                     GAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAA         >  SRR4302534.691860/1‑94 (MQ=60)

                                                                                     GAAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAA         >  SRR4302534.6152090/1‑94 (MQ=60)

                                                                                      AAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAG        >  SRR4302534.2639874/1‑94 (MQ=60)

                                                                                      AAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAG        <  SRR4302534.6072513/94‑1 (MQ=60)

                                                                                      AAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAG        >  SRR4302534.57861/1‑94 (MQ=60)

                                                                                      AAAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAG        >  SRR4302534.5570088/1‑94 (MQ=60)

                                                                                       AAGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGA       >  SRR4302534.4100445/1‑94 (MQ=60)

                                                                                        AGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGAT      <  SRR4302534.3012878/94‑1 (MQ=60)

                                                                                        AGTAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGAT      >  SRR4302534.1404658/1‑94 (MQ=60)

                                                                                          TAAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATGG    >  SRR4302534.2015691/1‑94 (MQ=60)

                                                                                           AAGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATGGC   <  SRR4302534.2685108/94‑1 (MQ=60)

                                                                                            AGCGGTCAGTTGATTGAGCCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATGGCG  <  SRR4302534.947626/94‑1 (MQ=60)

                                                                                            AGCGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATGGCG  >  SRR4302534.2888522/1‑94 (MQ=60)

                                                                                            AGCGGTCAGTTGATTGAACCTCGAGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGTTATTGTAAGCACCACCGAAGATGGCG  <  SRR4302534.3311844/94‑1 (MQ=60)

CGGATCGCTATATCGAGCAAGGCAATGTGTTCCTTAATGGCAAGCGAGCCACCATTGGCGATCAGGTGAAACCCGGCGACGTTGTGAAAGTAAACGGTCAGTTGATTGAACCTCGGGAAGCCGAAGATTTGGTACTTATCGCCCTGAACAAGCCCGTTGGTATTGTAAGCACCACCGAAGATGGCG  >  NC_000913/4228003‑4228188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`