Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,247,622	A→G	T164A (ACG→GCG)	malM →	MalM

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,247,622	0	A	G	100.0%	800.3 / NA	232	T164A (ACG→GCG)	malM	MalM
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (119/113); total (119/113)

Only 100 of 244 total aligned reads displayed.

CCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCACGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCC  >  NC_000913/4247532‑4247711

ccAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACcgcg                                                                                         <  1:5114308/93‑1 (MQ=255)

  aGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGa                                                                                       >  2:1875180/1‑93 (MQ=255)

  aGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCCCGGa                                                                                       >  2:558670/1‑93 (MQ=255)

   ggCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCCAAAACTTTATGTTCTGGTCTTTACCGCGGaa                                                                                      >  2:3124246/1‑93 (MQ=255)

   ggCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGaa                                                                                      >  2:4730281/1‑93 (MQ=255)

   ggCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGaa                                                                                      >  1:3729994/1‑93 (MQ=255)

   ggCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGaa                                                                                      >  1:3038856/1‑93 (MQ=255)

     cGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGaaaa                                                                                    <  1:346797/93‑1 (MQ=255)

       tgatgaGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAg                                                                                  >  2:5040305/1‑93 (MQ=255)

       tgatgaGTGCAGATCGGCTGGAAGGCGGTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTGTTTAACGCGGAAAAAg                                                                                  >  1:5535903/1‑93 (MQ=255)

        gatgaGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGa                                                                                 >  2:4353210/1‑93 (MQ=255)

        gatgaGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGa                                                                                 >  1:2643024/1‑93 (MQ=255)

        gatgaGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGa                                                                                 <  2:4043097/93‑1 (MQ=255)

         atgaGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGAt                                                                                <  1:5710236/93‑1 (MQ=255)

           gaGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGTAAAAAGAtct                                                                              <  1:3927754/93‑1 (MQ=255)

             gTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTcc                                                                            <  2:2287807/93‑1 (MQ=255)

             gTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTcc                                                                            <  1:3072928/93‑1 (MQ=255)

              tGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCca                                                                           >  2:2009408/1‑93 (MQ=255)

               gCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTTGGGCAGCAAAAACTTTATGTTCTGGTCTTTTCCGCGGAAAAAGATCTCcag                                                                          >  2:5061408/1‑93 (MQ=255)

               gCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCcag                                                                          <  1:213892/93‑1 (MQ=255)

               gCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATATCcag                                                                          >  1:6049969/1‑93 (MQ=255)

                 aGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCcagca                                                                        >  1:3296745/1‑93 (MQ=255)

                 aGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCcagca                                                                        >  1:1481607/1‑93 (MQ=255)

                   aTCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAga                                                                      <  1:4144355/93‑1 (MQ=255)

                    tCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAATCTTTATGTTCTGGTCTGTACCGCGGAAAAAGATCTCCAGCAgac                                                                     <  2:5320597/93‑1 (MQ=255)

                    tCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAgac                                                                     <  1:1038678/93‑1 (MQ=255)

                    tCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAgac                                                                     >  1:5032875/1‑93 (MQ=255)

                    tCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAgac                                                                     >  2:5651280/1‑93 (MQ=255)

                     cGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAgacg                                                                    <  2:2584856/93‑1 (MQ=255)

                     cGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAgacg                                                                    <  1:834161/93‑1 (MQ=255)

                         tGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGAccc                                                                <  1:2976858/93‑1 (MQ=255)

                          ggAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAACACTTTATGTTCTGGTCTTTACCGCGGAAAAAGACCTCCAGCAGACGACCCa                                                               <  1:5280131/93‑1 (MQ=255)

                          ggAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCa                                                               >  2:900209/1‑93 (MQ=255)

                          ggAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCa                                                               >  1:2873100/1‑93 (MQ=255)

                          ggAAGGAGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCa                                                               >  1:5355976/1‑93 (MQ=255)

                           gAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCaa                                                              >  2:5810950/1‑93 (MQ=255)

                            aaGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAAc                                                             <  1:3709830/93‑1 (MQ=255)

                               gCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGc                                                          <  1:946997/93‑1 (MQ=255)

                                 gTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTc                                                        <  2:6348898/93‑1 (MQ=255)

                                 gTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTc                                                        <  1:3683295/93‑1 (MQ=255)

                                 gTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTc                                                        >  1:562526/1‑93 (MQ=255)

                                  ttATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCATACGACCCAACTGCTCg                                                       >  2:4599972/1‑93 (MQ=255)

                                  ttATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCg                                                       >  2:1303996/1‑93 (MQ=255)

                                  ttATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCg                                                       >  2:2929995/1‑93 (MQ=255)

                                  ttATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCg                                                       <  2:5918376/93‑1 (MQ=255)

                                    aTGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGAc                                                     <  2:2209871/93‑1 (MQ=255)

                                       cgcCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCg                                                  <  1:2558417/93‑1 (MQ=255)

                                         ccTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGc                                                >  1:2810039/1‑93 (MQ=255)

                                         ccTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGc                                                <  1:2021543/93‑1 (MQ=255)

                                         ccTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGc                                                >  1:1284257/1‑93 (MQ=255)

                                         ccTGACACCGGCGTTGGGACAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGc                                                <  2:981037/93‑1 (MQ=255)

                                             acacCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTaaa                                            <  2:6106620/93‑1 (MQ=255)

                                              cacCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAg                                           >  1:2031373/1‑93 (MQ=255)

                                               acCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGc                                          <  2:1216260/93‑1 (MQ=255)

                                               acCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGc                                          >  1:5518094/1‑93 (MQ=255)

                                                ccGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGcc                                         <  2:3947682/93‑1 (MQ=255)

                                                 cGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCt                                        <  1:5470379/93‑1 (MQ=255)

                                                  ggCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTa                                       >  2:3577096/1‑93 (MQ=255)

                                                   gCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTAt                                      <  2:167415/93‑1 (MQ=255)

                                                     gTTGGGGCAGCAAACACTTTATGTTCTGGCCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGc                                    >  1:710075/1‑93 (MQ=255)

                                                     gTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTAGGc                                    >  1:774510/1‑93 (MQ=255)

                                                      ttGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGcc                                   >  1:1692133/1‑93 (MQ=255)

                                                      ttGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGcc                                   <  1:3798835/93‑1 (MQ=255)

                                                      ttGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGcc                                   >  1:2228999/1‑93 (MQ=255)

                                                        ggggCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCaa                                 >  1:5817692/1‑93 (MQ=255)

                                                        ggggCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCaa                                 >  2:3770461/1‑93 (MQ=255)

                                                        ggggCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCaa                                 <  2:3611530/93‑1 (MQ=255)

                                                         gtgcagcaAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAg                                <  2:1955958/91‑1 (MQ=255)

                                                         gggCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAg                                <  2:2527276/93‑1 (MQ=255)

                                                         gggCAACAAAAATTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCAAACTGCTCGACCCGGCTAAAGCCTATGCCAAg                                <  1:6220172/93‑1 (MQ=255)

                                                          ggCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAgg                               <  1:575648/93‑1 (MQ=255)

                                                          ggCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAgg                               >  2:6200403/1‑93 (MQ=255)

                                                           gcagcaAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAggg                              <  2:1075283/93‑1 (MQ=255)

                                                            cagcaAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGc                             >  2:326789/1‑93 (MQ=255)

                                                              gcaAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGATGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCgc                           >  2:6469841/1‑92 (MQ=255)

                                                              gcaAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGt                           >  2:4284149/1‑93 (MQ=255)

                                                               caAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTc                          <  2:4451172/93‑1 (MQ=255)

                                                                aaaaaCTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCg                         >  2:5864187/1‑93 (MQ=255)

                                                                   agcTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTa                      <  1:3575757/91‑1 (MQ=255)

                                                                   aaCTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTa                      >  1:4511826/1‑93 (MQ=255)

                                                                      tttATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACt                   <  1:5219659/93‑1 (MQ=255)

                                                                      tttATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACt                   <  2:4763837/93‑1 (MQ=255)

                                                                      tttATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACt                   >  2:100806/1‑93 (MQ=255)

                                                                       ttATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTc                  <  1:4848555/93‑1 (MQ=255)

                                                                       ttATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTc                  >  2:3856885/1‑93 (MQ=255)

                                                                       ttATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTc                  <  1:3358415/93‑1 (MQ=255)

                                                                        tATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCg                 <  1:1563987/93‑1 (MQ=255)

                                                                          tGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAAGTCGAt               >  1:1622061/1‑93 (MQ=255)

                                                                          tGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGAt               <  2:2732363/93‑1 (MQ=255)

                                                                           gTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATc              <  1:2389816/93‑1 (MQ=255)

                                                                           gTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATc              <  2:1667381/93‑1 (MQ=255)

                                                                             tCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATccc            <  2:2057362/93‑1 (MQ=255)

                                                                                ggTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGa         <  2:6224911/93‑1 (MQ=255)

                                                                                ggTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGa         >  2:4540732/1‑93 (MQ=255)

                                                                                  tCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGata       <  2:738289/93‑1 (MQ=255)

                                                                                    tttACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATc     >  2:242741/1‑93 (MQ=255)

                                                                                    tttACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATc     >  2:5228667/1‑93 (MQ=255)

                                                                                      tACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATccc   >  2:2861819/1‑93 (MQ=255)

                                                                                      tACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATccc   <  2:5486047/93‑1 (MQ=255)

                                                                                      tACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATccc   <  1:1875180/93‑1 (MQ=255)

CCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCACGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCC  >  NC_000913/4247532‑4247711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAACCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCACGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCGAT  >  NC_000913/4247529‑4247714

GAACCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCG                                                                                              <  SRR4302534.3958472/94‑1 (MQ=60)

GAACCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCG                                                                                              <  SRR4302534.3241501/94‑1 (MQ=60)

 AACCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGC                                                                                             <  SRR4302534.2861661/94‑1 (MQ=60)

 AACCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGC                                                                                             <  SRR4302534.2069474/94‑1 (MQ=60)

  ACCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCG                                                                                            <  SRR4302534.4307177/94‑1 (MQ=60)

   CCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGGGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTATCGCGG                                                                                           >  SRR4302534.5481206/1‑94 (MQ=60)

   CCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGG                                                                                           <  SRR4302534.5252330/94‑1 (MQ=60)

    CAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGA                                                                                          <  SRR4302534.3227336/94‑1 (MQ=60)

    CAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGA                                                                                          >  SRR4302534.3936102/1‑94 (MQ=60)

    CAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGA                                                                                          <  SRR4302534.5927184/94‑1 (MQ=60)

     AGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAA                                                                                         >  SRR4302534.3830224/1‑94 (MQ=60)

     AGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAA                                                                                         >  SRR4302534.1280878/1‑94 (MQ=60)

     AGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAA                                                                                         >  SRR4302534.5693665/1‑94 (MQ=60)

     AGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAA                                                                                         >  SRR4302534.3118544/1‑94 (MQ=60)

        CGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAA                                                                                      <  SRR4302534.355696/94‑1 (MQ=60)

        CGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAA                                                                                      >  SRR4302534.3183886/1‑94 (MQ=60)

         GTGATGAGTGCAGATCGGCTGGAAGGCGGTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTGTTTAACGCGGAAAAAG                                                                                     >  SRR4302534.5685345/1‑94 (MQ=60)

          TGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGA                                                                                    >  SRR4302534.2712920/1‑94 (MQ=60)

           GATGCGTGCAGATCGCCTGGAGGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAACCTTTATGTTCTGGTCTTTACCGCGGAAAAAGAT                                                                                   <  SRR4302534.5681437/94‑1 (MQ=60)

           GATGAGTGCAGATCGTCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGAT                                                                                   <  SRR4302534.1585781/94‑1 (MQ=60)

            ATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATC                                                                                  <  SRR4302534.6135006/94‑1 (MQ=60)

            ATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATC                                                                                  <  SRR4302534.5864933/94‑1 (MQ=60)

             TGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCT                                                                                 <  SRR4302534.304041/94‑1 (MQ=60)

             TGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCT                                                                                 >  SRR4302534.86855/1‑94 (MQ=60)

             TGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCT                                                                                 <  SRR4302534.2431774/94‑1 (MQ=60)

              GAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGTAAAAAGATCTC                                                                                <  SRR4302534.4032974/94‑1 (MQ=60)

              GAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTC                                                                                <  SRR4302534.1620807/94‑1 (MQ=60)

                GTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCA                                                                              <  SRR4302534.3153645/94‑1 (MQ=60)

                 TGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATATCCAG                                                                             >  SRR4302534.6214462/1‑94 (MQ=60)

                  GCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGC                                                                            <  SRR4302534.219501/94‑1 (MQ=60)

                   CAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCA                                                                           >  SRR4302534.1520570/1‑94 (MQ=60)

                   CAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCA                                                                           >  SRR4302534.3384698/1‑94 (MQ=60)

                    AGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAG                                                                          <  SRR4302534.5182396/94‑1 (MQ=60)

                     GATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGA                                                                         <  SRR4302534.2460143/94‑1 (MQ=60)

                     GATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGA                                                                         <  SRR4302534.2070574/94‑1 (MQ=60)

                      ATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGAC                                                                        <  SRR4302534.4256208/94‑1 (MQ=60)

                      ATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGAC                                                                        >  SRR4302534.5168820/1‑94 (MQ=60)

                      ATAGGCTGGAAGTCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGGC                                                                        <  SRR4302534.1522115/94‑1 (MQ=60)

                       TCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACG                                                                       <  SRR4302534.1065484/94‑1 (MQ=60)

                        CGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGA                                                                      <  SRR4302534.855151/94‑1 (MQ=60)

                            TGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCA                                                                  <  SRR4302534.3054779/94‑1 (MQ=60)

                            TGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCA                                                                  >  SRR4302534.2948545/1‑94 (MQ=60)

                            TGGAAGGAGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCA                                                                  >  SRR4302534.5500357/1‑94 (MQ=60)

                            GGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGCCAGCAAAAACTTTATGTTCTGGCCTTTACCGCGGAAAAAGATCTCCAGCAGGCGACTCA                                                                  <  SRR4302534.1114427/94‑1 (MQ=60)

                             GGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAACACTTTATGTTCTGGTCTTTACCGCGGAAAAAGACCTCCAGCAGACGACCCAA                                                                 <  SRR4302534.5422701/94‑1 (MQ=60)

                              GAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAAC                                                                >  SRR4302534.377732/1‑94 (MQ=60)

                              GAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAAC                                                                >  SRR4302534.2248731/1‑94 (MQ=60)

                               AAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACT                                                               <  SRR4302534.3809566/94‑1 (MQ=60)

                               AAGGCGTTATGCGCCTGACACAGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACT                                                               >  SRR4302534.3635436/1‑94 (MQ=60)

                                  GCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCT                                                            <  SRR4302534.971099/94‑1 (MQ=60)

                                   CGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTC                                                           >  SRR4302534.576364/1‑94 (MQ=60)

                                   CGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTC                                                           <  SRR4302534.381610/94‑1 (MQ=60)

                                   CGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTC                                                           >  SRR4302534.2767502/1‑94 (MQ=60)

                                    GTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCG                                                          <  SRR4302534.3782326/94‑1 (MQ=60)

                                    GTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCG                                                          <  SRR4302534.5643106/94‑1 (MQ=60)

                                    GTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATATCCAGCAGACGACCCAACTGCTCG                                                          >  SRR4302534.3507114/1‑94 (MQ=60)

                                         GCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCG                                                     <  SRR4302534.2491308/94‑1 (MQ=60)

                                         GCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCG                                                     <  SRR4302534.5067048/94‑1 (MQ=60)

                                         GCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCG                                                     <  SRR4302534.3750040/94‑1 (MQ=60)

                                         GCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCG                                                     >  SRR4302534.2082763/1‑94 (MQ=60)

                                          CGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGG                                                    <  SRR4302534.2626232/94‑1 (MQ=60)

                                           GCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGC                                                   >  SRR4302534.2883921/1‑94 (MQ=60)

                                           GCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGC                                                   >  SRR4302534.1318070/1‑94 (MQ=60)

                                           GCCTGACACCGCCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGC                                                   <  SRR4302534.3080782/94‑1 (MQ=60)

                                            CCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCT                                                  <  SRR4302534.2074431/94‑1 (MQ=60)

                                            CCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCT                                                  <  SRR4302534.1993194/94‑1 (MQ=60)

                                                ATACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAATATCTCCAGCAGACGACCCAACTGCTCGGCCCGGCTAAAG                                              <  SRR4302534.2896661/94‑1 (MQ=60)

                                                ACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAG                                              >  SRR4302534.6379594/1‑94 (MQ=60)

                                                ACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAG                                              >  SRR4302534.422525/1‑94 (MQ=60)

                                                ACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAG                                              >  SRR4302534.2084494/1‑94 (MQ=60)

                                                 CACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGC                                             >  SRR4302534.5666990/1‑94 (MQ=60)

                                                 CACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGGCTTTACCGCGGAAAAAGATCTCCAGACGACGACCCAACTacccgacgccggcaaagc                                             >  SRR4302534.4695289/1‑76 (MQ=60)

                                                  ACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCC                                            <  SRR4302534.5862694/94‑1 (MQ=60)

                                                    CGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTA                                          >  SRR4302534.1594434/1‑94 (MQ=60)

                                                    CGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTA                                          <  SRR4302534.5617853/94‑1 (MQ=60)

                                                    CGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTA                                          >  SRR4302534.2749880/1‑94 (MQ=60)

                                                      GCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATG                                        >  SRR4302534.5584793/1‑94 (MQ=60)

                                                       CGTTGGGGCAGCAAACACTTTATGTTCTGGCCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGC                                       >  SRR4302534.727513/1‑94 (MQ=60)

                                                       CGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGC                                       >  SRR4302534.1689834/1‑94 (MQ=60)

                                                       CGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGC                                       >  SRR4302534.2175916/1‑94 (MQ=60)

                                                       CGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGC                                       >  SRR4302534.2278229/1‑94 (MQ=60)

                                                       CGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGC                                       >  SRR4302534.5754637/1‑94 (MQ=60)

                                                       CGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTAGGC                                       >  SRR4302534.793810/1‑94 (MQ=60)

                                                        GTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCC                                      >  SRR4302534.1736113/1‑94 (MQ=60)

                                                        GTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCC                                      >  SRR4302534.3882156/1‑94 (MQ=60)

                                                        GTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCC                                      >  SRR4302534.2288041/1‑94 (MQ=60)

                                                         TTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCA                                     <  SRR4302534.3900836/94‑1 (MQ=60)

                                                          TGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAA                                    >  SRR4302534.3448736/1‑94 (MQ=60)

                                                          TGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAA                                    >  SRR4302534.5975592/1‑94 (MQ=60)

                                                          TGGGGCAGCAAAAACTTTATGTGCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAA                                    <  SRR4302534.4047511/94‑1 (MQ=60)

                                                           GGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAG                                   <  SRR4302534.994814/94‑1 (MQ=60)

                                                           GGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAG                                   >  SRR4302534.755741/1‑94 (MQ=60)

                                                           GGGGCAGCAAAAACTTTATGTTCTAGTCTTTACCGCGGAAAAAGATCGCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAG                                   >  SRR4302534.5323159/1‑94 (MQ=60)

                                                            GGGCAACAAAAATTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCAAACTGCTCGACCCGGCTAAAGCCTATGCCAAGG                                  <  SRR4302534.6389124/94‑1 (MQ=60)

                                                             GGCAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGG                                 <  SRR4302534.589780/94‑1 (MQ=60)

                                                               CAGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCG                               <  SRR4302534.824018/94‑1 (MQ=60)

                                                                AGCAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGT                              >  SRR4302534.5451002/1‑94 (MQ=60)

                                                                  CAAAAACTTTCTGTTCTGGGCTTTGCGGCGGAAAAAGATCTCCAGCAGACGACCCAACTTCTCGATCCAGCTAAAGCCTATGCCAAGGGCGTCG                            >  SRR4302534.681526/1‑94 (MQ=60)

                                                                  CAAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCG                            <  SRR4302534.1705780/94‑1 (MQ=60)

                                                                   AAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGG                           >  SRR4302534.870579/1‑94 (MQ=60)

                                                                   AAAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGG                           >  SRR4302534.3700875/1‑94 (MQ=60)

                                                                    AAAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGT                          >  SRR4302534.4616221/1‑94 (MQ=60)

                                                                     AAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTA                         >  SRR4302534.1774223/1‑94 (MQ=60)

                                                                     AAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTA                         >  SRR4302534.4634024/1‑94 (MQ=60)

                                                                     AAACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTA                         >  SRR4302534.34393/1‑94 (MQ=60)

                                                                      AGCTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAA                        <  SRR4302534.3671932/94‑1 (MQ=60)

                                                                      AACTTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAA                        >  SRR4302534.4835198/1‑94 (MQ=60)

                                                                        CTTTATGTTCTGGTCGTTACCGCGGAAAAAGGTCTCCAGCAGGCGACCCAACTGCTCCACGCGGCTAAAGCCTATGCCAAGGGCGTCGGTCACT                      >  SRR4302534.2459772/1‑94 (MQ=60)

                                                                         TTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTC                     <  SRR4302534.5360543/94‑1 (MQ=60)

                                                                         TTTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTC                     <  SRR4302534.2711495/94‑1 (MQ=60)

                                                                          TTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCG                    <  SRR4302534.3448365/94‑1 (MQ=60)

                                                                          TTATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCG                    <  SRR4302534.4980088/94‑1 (MQ=60)

                                                                           TATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGA                   <  SRR4302534.3823734/94‑1 (MQ=60)

                                                                           TATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGA                   <  SRR4302534.1604917/94‑1 (MQ=60)

                                                                            ATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAAGTCGAT                  >  SRR4302534.1664374/1‑94 (MQ=60)

                                                                            ATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGAT                  >  SRR4302534.5897329/1‑94 (MQ=60)

                                                                            ATGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGAT                  <  SRR4302534.141616/94‑1 (MQ=60)

                                                                             TGTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATC                 <  SRR4302534.2999406/94‑1 (MQ=60)

                                                                              GTTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCC                <  SRR4302534.2453317/94‑1 (MQ=60)

                                                                               TTCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCC               <  SRR4302534.6223036/94‑1 (MQ=60)

                                                                                TCTGGTCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCG              <  SRR4302534.5376656/94‑1 (MQ=60)

                                                                                     TCTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATAT         >  SRR4302534.75366/1‑94 (MQ=60)

                                                                                      CTTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATC        <  SRR4302534.5183700/94‑1 (MQ=60)

                                                                                       TTTACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCC       >  SRR4302534.6500189/1‑94 (MQ=60)

                                                                                         TACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCC     <  SRR4302534.1923981/94‑1 (MQ=60)

                                                                                         TACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCC     <  SRR4302534.5623577/94‑1 (MQ=60)

                                                                                          ACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCG    >  SRR4302534.59827/1‑94 (MQ=60)

                                                                                          ACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCG    >  SRR4302534.3849908/1‑94 (MQ=60)

                                                                                          ACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCG    <  SRR4302534.3133583/94‑1 (MQ=60)

                                                                                          ACCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCG    <  SRR4302534.5887872/94‑1 (MQ=60)

                                                                                           CCGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCGA   >  SRR4302534.2115017/1‑94 (MQ=60)

                                                                                            CGCGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCGAT  <  SRR4302534.6271543/94‑1 (MQ=60)

GAACCAGGCGTGATGAGTGCAGATCGGCTGGAAGGCGTTATGCGCCTGACACCGGCGTTGGGGCAGCAAAAACTTTATGTTCTGGTCTTTACCACGGAAAAAGATCTCCAGCAGACGACCCAACTGCTCGACCCGGCTAAAGCCTATGCCAAGGGCGTCGGTAACTCGATCCCGGATATCCCCGAT  >  NC_000913/4247529‑4247714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`