Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F2 I0 R1
|
130 |
5456.6 |
6845820 |
98.4% |
6736286 |
136.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,951,538 |
C→A |
17.5% |
A44A (GCC→GCA) |
topA → |
type I DNA topoisomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,951,538 | 0 | C | A | 17.5%
| 253.3
/ 9.6
| 141 | A44A (GCC→GCA) | topA | type I DNA topoisomerase |
| Reads supporting (aligned to +/- strand): ref base C (78/33); new base A (2/28); total (80/61) |
| Fisher's exact test for biased strand distribution p-value = 1.54e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 143 total aligned reads displayed.
GGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAAGA > NZ_CP022686/4951400‑4951675
|
ggTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCa > 5:129782/1‑140 (MQ=255)
ggTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCa > 2:484204/1‑140 (MQ=255)
gTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCTACAAGTATCTGGGTAGTGAATACGTGGTGACATCCAGCGTAGGTAACAAACGCGATTTGCCGACCACTCGCTCAACTGCCaa > 6:111035/1‑140 (MQ=255)
aaTATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACAGCCGCGATTTGCCGACCATTGGCTCAACTGCCaaaaa > 6:759344/1‑140 (MQ=255)
atatGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAag > 4:246783/1‑140 (MQ=255)
atatGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAag > 5:710776/1‑140 (MQ=255)
atatGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGAATTGCCGACCAGTGGCAAAACAGCCaaaaaa > 5:428742/1‑139 (MQ=255)
tatGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAaga > 7:303478/1‑140 (MQ=255)
tatGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAaga > 8:237774/1‑140 (MQ=255)
gTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGcc > 6:417296/1‑140 (MQ=255)
aaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAACTCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGATCAACTGCCAAAAAGAGTGCCgcc > 5:225942/1‑138 (MQ=255)
aaGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGAc > 7:446131/1‑140 (MQ=255)
gCTATTGTCAGCGTGGAGCCCCCGGAAAAAGCAAAAACGATAAACAAGTATCTGGGTAGTTACTCGGTGTTCAAATCATGCGTGGGTCAAATCCGCTATTTGCCGACCAGTGGCTCAACTGCAAAAATTCGGGCCGActc < 4:501775/140‑1 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTTGTGAAATCCAGCGTCGGTCAAATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTccc > 2:283871/1‑140 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGCCCAGTGGCGCAACTGCCAAAAAGAGTGCCGACTCTAcc > 8:655569/1‑140 (MQ=255)
ttGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGGATCTGGGTAGTGACGACGTGGTGATATCCAGCGTCGGTCACATCCGCGATTTGCCGCCAAGTGGCACCACTGCCAACAAGCTTGCCGACTCTAcc > 4:254610/1‑140 (MQ=255)
tGTCATCGTTGAGTCCCCGGCATAAGCCAAAACGATCCACAAGTATCTGGTTAGTTAATACGTGGTGAAATCCAGCGTCGGTAAGATCCGCGATTTGACTCACAGTGGGTCAACAGCCAAAAATCGTGACGGCTCTagcg > 7:48114/1‑137 (MQ=255)
tGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACACTAcca > 5:615970/1‑139 (MQ=255)
gTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGAACAACAATTATCTGGGTAGTTACTACGTGGAGAATTCCAGCGACGGTCACATCCGCTATTTGCCGACCAGTGGATCAACTGCCAAAAAGAGTGCCGAATCTaaaac > 8:721075/1‑136 (MQ=255)
cgaagAGTCCCCGGCAAAAGCCAAAACGAACAACAAGTATCTTGGTAGTGACTACGTCGTGAAATCCAGCGACGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTaaacca > 6:557001/5‑140 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCCACTGCCAAAAAGAGTGCCGACTCTACCTccacca > 2:173149/1‑140 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTccacca > 5:111483/1‑140 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACACTACCTccacca > 4:397050/1‑140 (MQ=255)
cGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCAGACTCTACCTccacca > 7:348491/1‑140 (MQ=255)
gTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCaa > 5:95427/1‑140 (MQ=255)
gTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCaa > 3:292048/1‑140 (MQ=255)
gTTCAGTCCCCGGCAAAAGCCAAAACGAACAACAAGAAACAGGTTAGTGACAACGTGGTGAAATCCCGCGTCGGTCACATCCGCGATTTGCCGACCACTGGCTCAACTTCAAAAAACAGAGCCGACTCTACCACCACCaa > 2:131494/1‑140 (MQ=255)
ccGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCTCCACCAAGACGGCTaa > 2:593886/1‑140 (MQ=255)
ccGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTaa > 1:873481/1‑140 (MQ=255)
ctgCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGATTCTACCTCCACCAAGACGGCTaaa < 8:37526/138‑1 (MQ=255)
cGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTTGTGAAATCCAGCGTCGGTCACATCCGCGATTTTCCGACCAGTGGCTCAACTGCCAAAAAGAGTTCAGACTCTACATCACCCAAGACGGCGaaa > 7:95619/1‑140 (MQ=255)
ggCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCCCCAAGAAGGCTaaaa > 8:221332/1‑140 (MQ=255)
caaaaaCGATCAACATTTATCTGGGTAGTGACTACGTGGTTAAATCCAGCGGCGGTCACATCCGCGATTGGCCGACCAGTGGCTCAACTCCCAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTaaa < 6:332792/138‑1 (MQ=255)
aaCGATCAACAAGTATCTGGGTAGTGACTAAGTGGTGAAATCCAGCGTCGGTCACATCAGCTATTTGCCGACCAGTGGCTCAAATGCCAAAAAGAGTGCAGACTCTACATCACCCAAGACGGCTAAAAATCCTAAACAgg > 3:426023/1‑140 (MQ=255)
caacaaGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGcc < 8:561333/82‑1 (MQ=255)
ttATCTGGGTTGTTACTACGTGGTTAAATCCCGCGTCGGTCACATCCGCTATTTCCCGACCAGTGGCTCAACTGCCAAAACGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGgcg < 1:534322/139‑1 (MQ=255)
ttATCTGGGTAGTTACTAGGTGTTTAAAACCCGCGTCGGTCAAATCCGCGATTTCCCCACCTGGGGCTCAACTGCAAAAAAGAGGCCCGACTCTACCTCCACCTAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGgcg < 5:74688/139‑1 (MQ=255)
ttATCGGGGTAGTGACTCCGTGGTTAAATCCCGCGGCGGTAAAATCCGCTATTTGCCGACCAGTGGCTAAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGgcg < 4:743389/139‑1 (MQ=255)
gttccTGGGTCGTGACTAGGGGTTGAACACCCGCGGCGGTCACATCCGCGTTTTCCCGCCAAGTGCCGCAACTGCAAAAACGCGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGgcg < 8:142128/136‑1 (MQ=255)
tCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCAAAAAAGCCTAAAAAGGATGAACGTGGCGctc > 6:458927/1‑140 (MQ=255)
ggtatggACTTCGTTGTTAAATCCTGCTGCGGCAACAGCCGCGATTTGCCGACCAGTGGCTCAACTGCAAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt < 6:538397/134‑1 (MQ=255)
ggTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGt > 5:576590/1‑140 (MQ=255)
gTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTc > 6:178753/1‑140 (MQ=255)
gTAGTCACTAGGTGGTTAAATCCAGCGTCGGTCAAATCCGCTATTTGCCGACCAGTGGCACAACTGCAAAAACGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTc < 2:886482/140‑1 (MQ=255)
tgttaCTACGTGGTGAAATACAGCGGCTGTCACTTCCGGTATTGGCGCACATGTGGCTACACTGCAAAAATGTGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 8:788755/136‑1 (MQ=255)
tgTGACTACTTGTTTAAATCCTGCGTGGTTCAAATCCGCGATTTGCCGACCAGTGGCTAAACTGCAAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 2:402407/139‑1 (MQ=255)
ggTGACAGCGTGGTGAACGCCAGCGTGGGTCACATCGGCGCTTGCCCCACCAGTGGCCCACCTCCCAAACAGACTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 6:615970/139‑1 (MQ=255)
agggACTACGTGGTGAAATCCCGCGCGGGACACATCCGCTATTTGCCGCCCTGTGGCTCAACTGCCAAACAGCGCGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 2:305299/137‑1 (MQ=255)
aGTGACTAGGTGGTGAAATCCAGAGTCGGTCACTTCCGCTATTTGCCCACGAGGGGCACACCTTCCAAAAATACGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCaa < 1:21513/140‑1 (MQ=255)
gTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTCCCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAc > 1:809645/1‑140 (MQ=255)
gTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAc > 2:424184/1‑140 (MQ=255)
tGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAAcc > 6:99427/1‑140 (MQ=255)
tGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTAAAcc > 3:417520/1‑140 (MQ=255)
gACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCg > 5:676488/1‑140 (MQ=255)
aCTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGt > 7:102091/1‑140 (MQ=255)
aCTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGt > 4:182557/1‑140 (MQ=255)
tccGTGGTGAAATCCAGCGGCGGTCACATCCGCGATTTGCCGACCCGGGGCTCACCTGCAAAAACGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 5:145097/138‑1 (MQ=255)
tACGTGGTTAAATCCAGGGTCGCTCACATCCGCTATTGCCCGCCCTGGGCCTCAACTGCCAAAAAGAGCCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 8:36929/140‑1 (MQ=255)
accGTGGTTAAACCCAGCGGCGGCCACAGCCGCTTTTTGCCTCCCTGTGCCGACACTGCAAAAAAGTGCGCCGACTCTACCTCCACCAAGCCGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTAt < 3:576918/138‑1 (MQ=255)
aCGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATg > 1:168190/1‑140 (MQ=255)
gttggttAAATCCTGGGTCGGCCAATTCCGGTATTTGCCCACCTTTGGCTCAACTGCAAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATgg < 8:568497/138‑1 (MQ=255)
cGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATgg > 5:823147/1‑140 (MQ=255)
cGTGGTGAAATCCAGCGGCGGTCACCTCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATgg > 1:534211/1‑140 (MQ=255)
gtgAACGCCCGCGGCGGCCACAGCCGCGATTTGCCGACCAGGGGCTCAACTGCCAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGt < 1:484204/140‑1 (MQ=255)
gtgAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGt > 7:776806/1‑140 (MQ=255)
gtgAAATCCAGCGTCGGTCACATCAGAGATTTGCCTACCAGTGGCTCAACTGCCAAAAAGAGTGCCGAATCTACCTACACCAAGACGGATAAAAAGACTAAAAAGGATGAACGTGTCGCACTCGTAAACCTTATggtggt > 8:289064/1‑140 (MQ=255)
tCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATTGGGGTTGAccc > 7:596382/1‑140 (MQ=255)
tCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGAccc > 7:592597/1‑140 (MQ=255)
cccgcggcgGGCACATCCGCGATTTGCCCACCAGGGGCTCAACTGCCAAAAACCGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCg < 5:46687/137‑1 (MQ=255)
cacgCGTCGGTCACTTCCGCTATTTGCCGACCTGTGGCTCAACTGCCAAAAAGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCg < 1:351616/137‑1 (MQ=255)
aGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGCCTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTg > 5:828412/1‑140 (MQ=255)
gcggcgGCCACATCCGCGATTTGCCTCCAATTGGCTAACCTCCCAAAATGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTgg < 7:712999/140‑1 (MQ=255)
cGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCACCCGTATGGGGGTTGACCCGTGGc > 1:113915/1‑140 (MQ=255)
ggcGGTCACATCCGCGTTTTGCCCACCAGGGCCTCAACTGCCAAAAAGAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 1:288510/138‑1 (MQ=255)
ggcGGCCACATCCGCGTTTTGCCGACCAGTGGCTCAACTGCAAAACAGCGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 2:732652/138‑1 (MQ=255)
gTCGGTCACATCCGCGATTTGCCGACCAGGGGCTCAACTGCCAAAAACAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 2:299632/140‑1 (MQ=255)
gTCGGTAACATCCGCTTTTTGCCGACAAGGGGCTCAACTGCCAAAAAGTGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGca < 8:23929/140‑1 (MQ=255)
ggTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACaa > 4:779429/1‑140 (MQ=255)
gTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTTCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACaaa > 5:180506/1‑139 (MQ=255)
gTCACATCCGCGATTTGCCGAACAGTGGCTCAAATGACAAAAAGAGTGCCGACAATACCTCCACCAAGACGGCTAAAAAGACAAAAAAGTATGAACGTGGCGCACTAGTCACCCGTATGGGGGTTGACCAGTGGCCCAAt > 2:377614/1‑140 (MQ=255)
tCAAATCCGCGATTTGCCCACCAGTGGCTCAAATGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAAtt < 7:521789/140‑1 (MQ=255)
aaTCCGCGATTTGCCGACCTGGGGCTAAATTGCCAAAAAGAGGCCCGACTCTACCTCCAACAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGAACAATTggg < 5:681768/139‑1 (MQ=255)
aTCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGa > 5:641711/1‑140 (MQ=255)
ctctttttGCCGACCATGGCCTACACTGCCTAAAATCGTGCCGACTCTACCTCCACCAAGTCGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgc < 6:803313/135‑1 (MQ=255)
gctttttGCCGCCCAGGGGCACACCTGCAAAACAGTGGCCCGACTCTACCTCCACCAAGACGGCGAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 2:562041/136‑1 (MQ=255)
gcgATTTGCGCAACTTTGGCCCAACGTCAAAAAAGTGTGACGACTCTACCTCCCCCAAGACGGCTAAAAAGCATAAAAAGGATGCACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcg < 6:187504/140‑1 (MQ=255)
cgATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGgcgc > 6:705962/1‑140 (MQ=255)
taTTTGCGTACCTGTGCCCCAAGTCCAAAAAAGTCTCCCGACTCTACCTGCACCTAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCa < 8:642180/139‑1 (MQ=255)
taTTTGCCGCCCTGTGGCTCAACTGCAAAAAATCGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCa < 2:468323/139‑1 (MQ=255)
taTTTGCCGACCTGTGGCTCAACTGCCAAAATTAGGGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCa < 1:460/139‑1 (MQ=255)
taTTTGCCGACCAGTGGCTCAACTGCCAAAAAGTGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCa < 3:246783/139‑1 (MQ=255)
taTTTGCCGACCAGGGCCACAACTGCAAAAACGAGTCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGACGCa < 5:803481/139‑1 (MQ=255)
gATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCACCCGTATGGGGGTTGACCCGTGGCCCAATTGGGAGGCGCa > 3:614620/1‑140 (MQ=255)
ccGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGa > 1:57750/1‑140 (MQ=255)
actgTGCCTAAACTGCAAAAAAGAGGCCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAgtg < 3:222315/137‑1 (MQ=255)
tggggCTCAATTTACAAAAGGATTCCCGACTCTACCTACACCTAGACGGCTAAAAAGCCTAAAAAGGATTAACGTTGCGCTCTCTTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGtt < 3:375203/137‑1 (MQ=255)
tgTGGCACAACTGCAAAAATCAGTTCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGtt < 8:395048/139‑1 (MQ=255)
cAACTGCCAAAAAGAGACCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGt < 3:522645/140‑1 (MQ=255)
aacgggCCAAAAAGTGCGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACAGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGAACTATGAAGTGTTGCCTGGt < 6:807068/135‑1 (MQ=255)
gCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACCATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAaga > 8:322472/1‑140 (MQ=255)
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GGTGAATATGGGTAAAGCTCTTGTCATCGTTGAGTCCCCGGCAAAAGCCAAAACGATCAACAAGTATCTGGGTAGTGACTACGTGGTGAAATCCAGCGTCGGTCACATCCGCGATTTGCCGACCAGTGGCTCAACTGCCAAAAAGAGTGCCGACTCTACCTCCACCAAGACGGCTAAAAAGCCTAAAAAGGATGAACGTGGCGCTCTCGTCAACCGTATGGGGGTTGACCCGTGGCACAATTGGGAGGCGCACTATGAAGTGTTGCCTGGTAAAGA > NZ_CP022686/4951400‑4951675
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
