Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,005,913 T→A 18.2% intergenic (‑81/‑70) yedN ← / → intG pseudogene, IpaH/YopM family/pseudogene, phage integrase family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,005,9130TA18.2% 638.1 / 129.0 248intergenic (‑81/‑70)yedN/intGpseudogene, IpaH/YopM family/pseudogene, phage integrase family
Reads supporting (aligned to +/- strand):  ref base T (90/113);  new base A (24/21);  total (114/134)
Fisher's exact test for biased strand distribution p-value = 3.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 253 total aligned reads displayed.

AGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATC  >  CP009273/2005764‑2006062
                                                                                                                                                     |                                                                                                                                                     
aGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCat                                                                                                                                                       >  2:569948/1‑150 (MQ=255)
     tAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCa                                                                                                                                                  >  1:2925844/1‑150 (MQ=255)
      aGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCAt                                                                                                                                                 >  2:228598/1‑150 (MQ=255)
       gATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAANTACCACTATCAAAAATCGCTCATATCCATc                                                                                                                                                <  1:4287268/150‑1 (MQ=255)
           tgACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGccc                                                                                                                                            <  1:1306073/150‑1 (MQ=255)
            gACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCg                                                                                                                                           <  1:2901496/150‑1 (MQ=255)
            gACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCg                                                                                                                                           >  1:2188094/1‑150 (MQ=255)
               tttatttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGaa                                                                                                                                        >  2:3862987/1‑150 (MQ=255)
                 tatttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAata                                                                                                                                      <  2:814807/150‑1 (MQ=255)
                  atttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAatat                                                                                                                                     <  1:212845/150‑1 (MQ=255)
                  atttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAatat                                                                                                                                     <  1:2161733/150‑1 (MQ=255)
                  atttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAatat                                                                                                                                     >  2:3150361/1‑150 (MQ=255)
                   tttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATg                                                                                                                                    <  2:4025212/150‑1 (MQ=255)
                   tttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATg                                                                                                                                    <  1:1550615/150‑1 (MQ=255)
                   tttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATg                                                                                                                                    <  1:910384/150‑1 (MQ=255)
                    ttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGa                                                                                                                                   >  1:2859874/1‑150 (MQ=255)
                       aTTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATa                                                                                                                                >  1:249689/1‑150 (MQ=255)
                         tGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATaaa                                                                                                                              >  2:706886/1‑150 (MQ=255)
                            aCCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAAc                                                                                                                           <  1:333312/150‑1 (MQ=255)
                            aCCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATGACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAAc                                                                                                                           <  1:3583171/150‑1 (MQ=255)
                               ggCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATc                                                                                                                        >  2:2403152/1‑150 (MQ=255)
                               ggCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATc                                                                                                                        >  2:895581/1‑150 (MQ=255)
                               ggCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATc                                                                                                                        >  2:628254/1‑150 (MQ=255)
                                gCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATca                                                                                                                       <  2:4586440/150‑1 (MQ=255)
                                  tGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATcaac                                                                                                                     >  1:3139558/1‑150 (MQ=255)
                                   gAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATcaaca                                                                                                                    <  1:3981789/150‑1 (MQ=255)
                                    aGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATcaacaa                                                                                                                   >  2:1082835/1‑150 (MQ=255)
                                    aGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATcaacaa                                                                                                                   <  2:1420766/150‑1 (MQ=255)
                                     gTTTTTAACGAAAGATCATTTAATGGAAAAATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACaaa                                                                                                                  <  2:2173237/150‑1 (MQ=255)
                                      tttttAACGAAAGATCATTTAATTGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGAATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATcaacaatg                                                                                                                 <  1:1932448/150‑3 (MQ=255)
                                      tttttAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAg                                                                                                                 <  2:4440546/150‑1 (MQ=255)
                                         ttAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGAtt                                                                                                              >  1:2002024/1‑150 (MQ=255)
                                          tAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTa                                                                                                             >  1:2315043/1‑150 (MQ=255)
                                          tAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTa                                                                                                             >  1:1387809/1‑150 (MQ=255)
                                              gAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAAtt                                                                                                         <  2:2277911/150‑1 (MQ=255)
                                              gAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAAtt                                                                                                         >  2:4590283/1‑150 (MQ=255)
                                                aaGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTAt                                                                                                       <  1:3269085/150‑1 (MQ=255)
                                                   aTCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCa                                                                                                    >  1:3377790/1‑150 (MQ=255)
                                                      aTTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCagag                                                                                                 <  1:1995596/150‑1 (MQ=255)
                                                       tttAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAgg                                                                                                >  2:4458600/1‑150 (MQ=255)
                                                       tttAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAgg                                                                                                <  1:3839216/150‑1 (MQ=255)
                                                       tttAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAgg                                                                                                <  1:4225760/150‑1 (MQ=255)
                                                       tttAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAgg                                                                                                <  1:688685/150‑1 (MQ=255)
                                                          aaTGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTa                                                                                             <  1:2282761/150‑1 (MQ=255)
                                                          aaTGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTa                                                                                             <  2:2386665/150‑1 (MQ=255)
                                                           aTGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTAc                                                                                            >  2:159401/1‑150 (MQ=255)
                                                            tGGAAACATTTACACTCCTGTTTAAAAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATACATAGCCCTGAATATGAATAAAAACATCAACAAAGATTAAATTATCCACAGGtacct                                                                                           >  2:965536/1‑146 (MQ=255)
                                                              gAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGt                                                                                         <  2:2798059/150‑1 (MQ=255)
                                                                 aCATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGc                                                                                      >  2:4333338/1‑150 (MQ=255)
                                                                    tttACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTc                                                                                   >  2:3446100/1‑150 (MQ=255)
                                                                     ttACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCt                                                                                  <  2:4158427/150‑1 (MQ=255)
                                                                         acTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTgg                                                                              >  1:1708462/1‑150 (MQ=255)
                                                                           tCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTc                                                                            >  1:3305403/1‑150 (MQ=255)
                                                                            ccTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCg                                                                           <  1:1883548/150‑1 (MQ=255)
                                                                            ccTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCg                                                                           >  1:1794559/1‑150 (MQ=255)
                                                                            ccTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCg                                                                           <  2:2441528/150‑1 (MQ=255)
                                                                            ccTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCg                                                                           <  2:2861646/150‑1 (MQ=255)
                                                                             cTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGt                                                                          <  1:2988626/150‑1 (MQ=255)
                                                                             cTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGt                                                                          <  1:3569892/150‑1 (MQ=255)
                                                                              tGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTa                                                                         >  1:3941322/1‑150 (MQ=255)
                                                                               gTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTaa                                                                        >  2:1874857/1‑150 (MQ=255)
                                                                               gTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTaa                                                                        <  1:3713173/150‑1 (MQ=255)
                                                                                     taaATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACAt                                                                  >  2:3763602/1‑150 (MQ=255)
                                                                                     taaATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACAt                                                                  >  2:3957896/1‑150 (MQ=255)
                                                                                        aTTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCg                                                               <  2:3747505/150‑1 (MQ=255)
                                                                                           atatTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATAGACCGGAATATGAATAAAAACATCAACAAAGAATAAATAATCAAGAGGTTAATGTTTCGTCTTTGGTCGTAACAACATCCGACg                                                            >  2:3041128/1‑150 (MQ=255)
                                                                                             atTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACgtg                                                          <  2:1787482/150‑1 (MQ=255)
                                                                                                    aGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGAtgt                                                   >  1:4484377/1‑150 (MQ=255)
                                                                                                     gggCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGAtgtg                                                  >  1:827638/1‑150 (MQ=255)
                                                                                                      ggCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATgtgt                                                 <  2:2120569/150‑1 (MQ=255)
                                                                                                      ggCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATgtgt                                                 >  2:532350/1‑150 (MQ=255)
                                                                                                       gcgcATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTc                                                >  2:1155908/1‑150 (MQ=255)
                                                                                                           aTTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAAt                                            >  1:1229357/1‑150 (MQ=255)
                                                                                                                 aaaCACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACg                                      <  2:811804/150‑1 (MQ=255)
                                                                                                                  aaCACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGc                                     <  2:1540851/150‑1 (MQ=255)
                                                                                                                    cacaATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctc                                   <  2:2001978/150‑1 (MQ=255)
                                                                                                                     acaATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctct                                  <  1:606228/150‑1 (MQ=255)
                                                                                                                     acaATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctct                                  >  1:2083054/1‑150 (MQ=255)
                                                                                                                       aaTAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGa                                >  1:2731289/1‑150 (MQ=255)
                                                                                                                         tAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATg                              <  2:921995/150‑1 (MQ=255)
                                                                                                                          aaaaTTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGt                             >  2:119449/1‑150 (MQ=255)
                                                                                                                           aaaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGtt                            <  2:2743053/150‑1 (MQ=255)
                                                                                                                                aCCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAggg                       >  1:4360552/1‑150 (MQ=255)
                                                                                                                                 ccACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgggg                      >  2:4062555/1‑150 (MQ=255)
                                                                                                                                 ccACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgggg                      <  2:2859874/150‑1 (MQ=255)
                                                                                                                                 ccACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgggg                      <  1:2403152/150‑1 (MQ=255)
                                                                                                                                 ccACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgggg                      <  1:628835/150‑1 (MQ=255)
                                                                                                                                  cACTATCAAAAATCGCTCATATCCATCGCCCGGAATTTGAATAACAACATCAACTAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTTACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAggggg                     <  1:4594342/150‑1 (MQ=255)
                                                                                                                                      aTCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTa                 <  1:4328144/150‑1 (MQ=255)
                                                                                                                                        cAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATc               <  1:3595638/150‑1 (MQ=255)
                                                                                                                                         aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATcg              >  1:1242361/1‑150 (MQ=255)
                                                                                                                                         aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATcg              >  2:2561127/1‑150 (MQ=255)
                                                                                                                                          aaaaTCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATcgc             >  1:2955783/1‑150 (MQ=255)
                                                                                                                                             aTCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGta          <  2:3552390/150‑1 (MQ=255)
                                                                                                                                              tCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGtat         <  1:2538563/150‑1 (MQ=255)
                                                                                                                                               cGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGtata        >  2:4472905/1‑150 (MQ=255)
                                                                                                                                               cGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGtata        >  1:2007979/1‑150 (MQ=255)
                                                                                                                                               cGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGtata        >  1:4276836/1‑150 (MQ=255)
                                                                                                                                                gCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc       <  1:159401/150‑1 (MQ=255)
                                                                                                                                                     tatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATc  <  2:2644854/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATC  >  CP009273/2005764‑2006062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A