Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,005,913 T→A 44.4% intergenic (‑81/‑70) yedN ← / → intG pseudogene, IpaH/YopM family/pseudogene, phage integrase family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,005,9130TA44.4% 106.6 / inf 241intergenic (‑81/‑70)yedN/intGpseudogene, IpaH/YopM family/pseudogene, phage integrase family
Reads supporting (aligned to +/- strand):  ref base T (62/72);  new base A (58/49);  total (120/121)
Fisher's exact test for biased strand distribution p-value = 2.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 249 total aligned reads displayed.

AGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATC  >  CP009273/2005764‑2006062
                                                                                                                                                     |                                                                                                                                                     
   aTTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATc                                                                                                                                                    <  1:4308098/150‑1 (MQ=255)
    ttAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATcc                                                                                                                                                   <  2:2692644/150‑1 (MQ=255)
     tAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCa                                                                                                                                                  <  2:4397050/150‑1 (MQ=255)
     tAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCa                                                                                                                                                  <  1:943836/150‑1 (MQ=255)
     tAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCa                                                                                                                                                  <  1:2044445/150‑1 (MQ=255)
      aGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCAt                                                                                                                                                 >  2:3885149/1‑150 (MQ=255)
      aGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCAt                                                                                                                                                 >  2:1561981/1‑150 (MQ=255)
       gATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATc                                                                                                                                                <  2:2914788/150‑1 (MQ=255)
       gATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATc                                                                                                                                                <  1:478203/150‑1 (MQ=255)
         tgtgACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGc                                                                                                                                              >  1:1125711/1‑150 (MQ=255)
             aCTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCgg                                                                                                                                          <  2:3667433/150‑1 (MQ=255)
             aCTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCgg                                                                                                                                          >  1:1433333/1‑150 (MQ=255)
                 tatttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAata                                                                                                                                      >  2:983132/1‑150 (MQ=255)
                    ttaATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGa                                                                                                                                   <  1:2787512/150‑1 (MQ=255)
                      aaTTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAAt                                                                                                                                 <  1:3705421/150‑1 (MQ=255)
                      aaTTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAAt                                                                                                                                 <  2:3360434/150‑1 (MQ=255)
                      aaTTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAAt                                                                                                                                 <  1:2106646/150‑1 (MQ=255)
                      aaTTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAAt                                                                                                                                 >  2:521090/1‑150 (MQ=255)
                           aaCCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATaaaaa                                                                                                                            <  1:544616/150‑1 (MQ=255)
                            aCCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAAc                                                                                                                           <  2:3617006/150‑1 (MQ=255)
                             ccGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAAAACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAATCa                                                                                                                          >  2:489103/1‑150 (MQ=255)
                              cGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACAt                                                                                                                         >  2:1798103/1‑150 (MQ=255)
                                gCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATca                                                                                                                       <  2:1857229/150‑1 (MQ=255)
                                  tGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATcaac                                                                                                                     <  2:3689681/150‑1 (MQ=255)
                                    aGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATcaacaa                                                                                                                   >  1:4107124/1‑150 (MQ=255)
                                        tttAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGAt                                                                                                               >  2:3805997/1‑150 (MQ=255)
                                         ttAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGAtt                                                                                                              >  2:1550291/1‑150 (MQ=255)
                                          tAACGAAAGATCATTTAATGGAAACATTTACACTACTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTa                                                                                                             <  2:2336823/150‑1 (MQ=255)
                                            aCGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTaaa                                                                                                           <  1:4184065/150‑1 (MQ=255)
                                               aaaGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTa                                                                                                        <  1:3170960/150‑1 (MQ=255)
                                               aaaGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTa                                                                                                        <  1:3979357/150‑1 (MQ=255)
                                                aaGATAATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTAt                                                                                                       <  1:4258050/150‑1 (MQ=255)
                                                 aGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATc                                                                                                      <  1:313492/150‑1 (MQ=255)
                                                    tCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCag                                                                                                   >  1:3993116/1‑150 (MQ=255)
                                                      aTTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCagag                                                                                                 >  2:326932/1‑150 (MQ=255)
                                                       tttAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAgg                                                                                                <  2:2489824/150‑1 (MQ=255)
                                                       tttAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAgg                                                                                                <  1:4344517/150‑1 (MQ=255)
                                                       tttAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAgg                                                                                                <  2:4333271/150‑1 (MQ=255)
                                                            tGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACt                                                                                           >  1:3291416/1‑150 (MQ=255)
                                                             ggAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTg                                                                                          >  1:369781/1‑150 (MQ=255)
                                                              gAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGt                                                                                         >  1:3577627/1‑150 (MQ=255)
                                                               aaaCATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGtt                                                                                        <  1:2099209/150‑1 (MQ=255)
                                                               aaaCATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGtt                                                                                        <  2:1478242/150‑1 (MQ=255)
                                                                   aTTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGt                                                                                    >  1:4544346/1‑150 (MQ=255)
                                                                     ttACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCt                                                                                  >  2:2162264/1‑150 (MQ=255)
                                                                     ttACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCt                                                                                  >  2:2314688/1‑150 (MQ=255)
                                                                       acacTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCtgt                                                                                <  1:3044445/150‑1 (MQ=255)
                                                                       acacTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCtgt                                                                                <  2:4516077/150‑1 (MQ=255)
                                                                       acacTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCtgt                                                                                <  1:3479489/150‑1 (MQ=255)
                                                                         acTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTgg                                                                              >  2:4300590/1‑150 (MQ=255)
                                                                           tCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTc                                                                            >  1:1068786/1‑150 (MQ=255)
                                                                           tCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTc                                                                            <  1:2931988/150‑1 (MQ=255)
                                                                             cTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGt                                                                          >  2:3478825/1‑150 (MQ=255)
                                                                               gTTTAATAAATTATATTTCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCAAGAGGTTACTGTTGCGTCTGTGGTCGTaa                                                                        >  1:2387728/1‑150 (MQ=255)
                                                                               gTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTaa                                                                        >  2:4263046/1‑150 (MQ=255)
                                                                               gTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTaa                                                                        >  2:79804/1‑150 (MQ=255)
                                                                                 ttAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTaaca                                                                      <  1:2241303/150‑1 (MQ=255)
                                                                                   aataaATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTaacaac                                                                    >  2:742698/1‑150 (MQ=255)
                                                                                   aataaATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTaacaac                                                                    <  1:3671902/150‑1 (MQ=255)
                                                                                       aaTTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATcc                                                                >  1:3670999/1‑150 (MQ=255)
                                                                                        aTTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCg                                                               >  1:1597818/1‑150 (MQ=255)
                                                                                         ttATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGa                                                              >  1:776462/1‑150 (MQ=255)
                                                                                         ttATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGa                                                              >  1:3093689/1‑150 (MQ=255)
                                                                                           atatTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACg                                                            <  2:1373492/150‑1 (MQ=255)
                                                                                           atatTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACg                                                            <  1:2852708/150‑1 (MQ=255)
                                                                                            tatTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACgt                                                           >  2:2661638/1‑150 (MQ=255)
                                                                                                    aGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGAtgt                                                   >  1:3622083/1‑150 (MQ=255)
                                                                                                      ggCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATgtgt                                                 >  1:1252438/1‑150 (MQ=255)
                                                                                                           aTTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAAt                                            <  2:1949338/150‑1 (MQ=255)
                                                                                                           aTTCTAAAACACAATAAAAGTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAAt                                            <  2:1949280/150‑1 (MQ=255)
                                                                                                             tCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATga                                          >  1:4497956/1‑150 (MQ=255)
                                                                                                               tAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATgaga                                        >  1:3462065/1‑150 (MQ=255)
                                                                                                                 aaaCACAATAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACg                                      <  1:2860347/150‑1 (MQ=255)
                                                                                                                   acacAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGct                                    <  2:2218964/150‑1 (MQ=255)
                                                                                                                     acaATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctct                                  <  2:1114961/150‑1 (MQ=255)
                                                                                                                      caATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTg                                 <  1:3388988/150‑1 (MQ=255)
                                                                                                                        aTAAAATTACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGAt                               <  1:1949129/150‑1 (MQ=255)
                                                                                                                          aaaaTTACCTCTATCAAAAATCGATCAAATCCATCGCCCGGTATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGt                             <  1:2375950/150‑1 (MQ=255)
                                                                                                                           aaaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGtt                            <  1:181144/150‑1 (MQ=255)
                                                                                                                             aTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCa                          <  2:1243556/150‑1 (MQ=255)
                                                                                                                               tACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgg                        >  1:3051979/1‑150 (MQ=255)
                                                                                                                               tACCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgg                        >  1:1755968/1‑150 (MQ=255)
                                                                                                                                aCCACTATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAggg                       >  2:4087147/1‑150 (MQ=255)
                                                                                                                                 ccACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgggg                      <  1:98345/150‑1 (MQ=255)
                                                                                                                                  cACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAggggg                     >  1:3793510/1‑150 (MQ=255)
                                                                                                                                   aCTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgggggg                    >  1:3791175/1‑150 (MQ=255)
                                                                                                                                     tATCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGtt                  >  1:1941626/1‑150 (MQ=255)
                                                                                                                                      aTCAAAAATCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTa                 >  2:2643663/1‑150 (MQ=255)
                                                                                                                                         aaaaaTCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATcg              >  1:1095141/1‑150 (MQ=255)
                                                                                                                                          aaaaTCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATcgc             >  1:4223425/1‑150 (MQ=255)
                                                                                                                                             aTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGta          <  2:581018/150‑1 (MQ=255)
                                                                                                                                             aTCGCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGta          >  2:3127534/1‑150 (MQ=255)
                                                                                                                                                gCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc       <  2:794661/150‑1 (MQ=255)
                                                                                                                                                gCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc       <  2:4594069/150‑1 (MQ=255)
                                                                                                                                                gCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc       <  2:794467/150‑1 (MQ=255)
                                                                                                                                                gCTCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc       >  1:2615666/1‑150 (MQ=255)
                                                                                                                                                  tCATATCCATCGCCCGGAAGATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACgg     <  1:4462382/150‑1 (MQ=255)
                                                                                                                                                  tCAAATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACgg     <  1:1005620/150‑1 (MQ=255)
                                                                                                                                                    atatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGAt   >  2:3720430/1‑150 (MQ=255)
                                                                                                                                                     tatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATc  <  1:832678/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATC  >  CP009273/2005764‑2006062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A