Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F181 I0 R1	1262	323.1	10297870	97.5%	10040423	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	2,259,689	C→A	16.9%	intergenic (+188/‑35)	yeiP → / → yeiQ	elongation factor P‑like protein/putative NAD‑dependent D‑mannonate oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	2,259,689	0	C	A	16.9%	973.2 / 131.7	331	intergenic (+188/‑35)	yeiP/yeiQ	elongation factor P‑like protein/putative NAD‑dependent D‑mannonate oxidoreductase
Reads supporting (aligned to +/- strand): ref base C (144/130); new base A (32/25); total (176/155)
Fisher's exact test for biased strand distribution p-value = 6.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 336 total aligned reads displayed.

CCTTTTTTAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCACCGCGCTC  >  CP009273/2259540‑2259838

 cTTTTTTAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCg                                                                                                                                                      <  1:3482927/150‑1 (MQ=255)

 cTTTTTTAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCg                                                                                                                                                      >  2:4981797/1‑150 (MQ=255)

 cTTTTTTAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCg                                                                                                                                                      >  2:1724599/1‑150 (MQ=255)

   tttttAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCgtt                                                                                                                                                    <  2:2068868/150‑1 (MQ=255)

     tttAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCgttgt                                                                                                                                                  >  2:3612297/1‑150 (MQ=255)

      ttAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCgttgtt                                                                                                                                                 <  2:3618152/150‑1 (MQ=255)

      ttAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCgttgtt                                                                                                                                                 >  1:1690450/1‑150 (MQ=255)

         aTTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGttaat                                                                                                                                              <  2:1407168/150‑1 (MQ=255)

            tattatACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTAGTTGttaattaa                                                                                                                                           <  1:202296/150‑1 (MQ=255)

             attatACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTtaattaat                                                                                                                                          <  1:531260/150‑1 (MQ=255)

              ttatACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATc                                                                                                                                         <  2:2547264/150‑1 (MQ=255)

                   ccAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTAc                                                                                                                                    >  1:244561/1‑150 (MQ=255)

                   ccAATCTTCTATTTTGCGCGTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTAc                                                                                                                                    <  1:4137032/150‑1 (MQ=255)

                    cAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACt                                                                                                                                   >  2:3843922/1‑150 (MQ=255)

                     aaTCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTa                                                                                                                                  <  1:1214520/150‑1 (MQ=255)

                     aaTCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTa                                                                                                                                  >  2:3157925/1‑150 (MQ=255)

                      aTCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCTCTTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTaa                                                                                                                                 <  1:4659292/150‑1 (MQ=255)

                      aTCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTaa                                                                                                                                 <  1:3583819/150‑1 (MQ=255)

                       tcttctATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAg                                                                                                                                <  1:1087212/150‑1 (MQ=255)

                       tcttctATTTTGCGCGTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAg                                                                                                                                <  1:2707462/150‑1 (MQ=255)

                         ttctATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGAc                                                                                                                              >  1:3532252/1‑150 (MQ=255)

                           ctATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGt                                                                                                                            >  2:657554/1‑150 (MQ=255)

                             aTTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGa                                                                                                                          >  1:917058/1‑150 (MQ=255)

                             aTTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGa                                                                                                                          >  1:3152037/1‑150 (MQ=255)

                              ttttGCGCGTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGAc                                                                                                                         <  1:1611555/150‑1 (MQ=255)

                                  gcgcTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCt                                                                                                                     >  2:4897035/1‑150 (MQ=255)

                                   cgcTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTa                                                                                                                    <  2:1638696/150‑1 (MQ=255)

                                    gcTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTAt                                                                                                                   <  1:2753323/150‑1 (MQ=255)

                                         cTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATa                                                                                                              >  2:93106/1‑150 (MQ=255)

                                            aaCACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACaa                                                                                                           >  2:1393373/1‑150 (MQ=255)

                                              cacCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATc                                                                                                         <  1:2971311/150‑1 (MQ=255)

                                               acCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCg                                                                                                        <  1:2888995/150‑1 (MQ=255)

                                               acCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCg                                                                                                        >  2:3253135/1‑150 (MQ=255)

                                                 cTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGcc                                                                                                      >  1:1876183/1‑150 (MQ=255)

                                                  ttACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTACTATGAATACAATCGCCt                                                                                                     >  2:4995117/1‑150 (MQ=255)

                                                    aCGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTcc                                                                                                   <  2:4299745/150‑1 (MQ=255)

                                                       cccTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGTCTCCTATGAATACAATCGCCTCCGtt                                                                                                <  2:2314636/150‑1 (MQ=255)

                                                       cccTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGtt                                                                                                >  1:5000540/1‑150 (MQ=255)

                                                               tttCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCTTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTccc                                                                                        <  2:4696672/150‑1 (MQ=255)

                                                               tttCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTccc                                                                                        >  2:1053068/1‑150 (MQ=255)

                                                               tttCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTccc                                                                                        <  1:4283053/150‑1 (MQ=255)

                                                                          gattgatCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTac                                                                             <  2:3872227/150‑1 (MQ=255)

                                                                           attgatCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTaca                                                                            <  2:183237/150‑1 (MQ=255)

                                                                            ttgatCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTacac                                                                           <  1:2540923/150‑1 (MQ=255)

                                                                                    ccTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACg                                                                   <  2:615315/150‑1 (MQ=255)

                                                                                          acgtCATCGCATTAACAATCCAGCCCAATTTCACTTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGCCGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGa                                                             <  1:50179/147‑1 (MQ=255)

                                                                                          acTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGa                                                             <  1:2651205/150‑1 (MQ=255)

                                                                                           cTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGAt                                                            >  2:3373025/1‑150 (MQ=255)

                                                                                            ttCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATc                                                           <  2:4530789/150‑1 (MQ=255)

                                                                                            ttCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATc                                                           <  1:1525078/150‑1 (MQ=255)

                                                                                                tCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCca                                                       <  2:2169304/150‑1 (MQ=255)

                                                                                                  gCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCcagc                                                     >  2:1166273/1‑150 (MQ=255)

                                                                                                     ttAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGt                                                  >  1:1870625/1‑150 (MQ=255)

                                                                                                     ttAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGt                                                  >  2:2484358/1‑150 (MQ=255)

                                                                                                     ttAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGt                                                  >  2:1739762/1‑150 (MQ=255)

                                                                                                      tAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGtt                                                 <  2:1534585/150‑1 (MQ=255)

                                                                                                       aaCAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTg                                                >  1:4210365/1‑150 (MQ=255)

                                                                                                           aTCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAAt                                            >  2:3457681/1‑150 (MQ=255)

                                                                                                            tCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATc                                           <  1:1279720/150‑1 (MQ=255)

                                                                                                            tCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATc                                           >  1:4980871/1‑150 (MQ=255)

                                                                                                             ccAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCa                                          >  1:4091669/1‑150 (MQ=255)

                                                                                                             ccAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCa                                          <  1:2591636/150‑1 (MQ=255)

                                                                                                              cAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCAc                                         <  1:4053660/150‑1 (MQ=255)

                                                                                                               aGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACg                                        >  1:3217854/1‑150 (MQ=255)

                                                                                                                gACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGt                                       <  1:2840723/150‑1 (MQ=255)

                                                                                                                 aCCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTa                                      >  2:283828/1‑150 (MQ=255)

                                                                                                                  ccAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACACCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTAt                                     >  2:4611812/1‑150 (MQ=255)

                                                                                                                   cAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATc                                    <  2:4052525/150‑1 (MQ=255)

                                                                                                                    aaTTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCg                                   <  2:3940718/150‑1 (MQ=255)

                                                                                                                     aTTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGt                                  >  1:3360838/1‑150 (MQ=255)

                                                                                                                      tttCAATTGCTGTCATATAACATTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGtt                                 <  2:3289609/150‑1 (MQ=255)

                                                                                                                        tCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATTCAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCa                               >  1:1901942/1‑150 (MQ=255)

                                                                                                                         cAATTGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCAt                              >  2:4618853/1‑150 (MQ=255)

                                                                                                                          aaTTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCAtt                             >  1:2414184/1‑150 (MQ=255)

                                                                                                                          aaTTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCAtt                             <  1:790265/150‑1 (MQ=255)

                                                                                                                             tGCTGTCATATAACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTg                          >  1:2790588/1‑150 (MQ=255)

                                                                                                                              gCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTgg                         <  2:967532/150‑1 (MQ=255)

                                                                                                                               cTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGc                        >  1:4833201/1‑150 (MQ=255)

                                                                                                                                tGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGTCGGGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCt                       >  2:2405967/1‑150 (MQ=255)

                                                                                                                                 gTCATATAACTTTACACTGTCGTTGTTAAATAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATTATCGCCAGCAGTTGCAATCAAGTATCGTTAATTTTGGCtt                      >  1:4698940/1‑150 (MQ=255)

                                                                                                                                  tCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCttt                     <  1:4291772/150‑1 (MQ=255)

                                                                                                                                   cATATACCTTGACCCTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCAGGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTg                    <  1:2860208/150‑1 (MQ=255)

                                                                                                                                   cATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTg                    >  2:4916238/1‑150 (MQ=255)

                                                                                                                                       taACTTTACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGc                >  2:3133001/1‑150 (MQ=255)

                                                                                                                                         aCTTTACACTGTCGTTGTTAATTACTCGTTACTAAGACGTGACTCCGATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCt              <  1:3746373/150‑1 (MQ=255)

                                                                                                                                           tttACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCttt            >  1:4540141/1‑150 (MQ=255)

                                                                                                                                           tttACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCttt            <  1:4491386/150‑1 (MQ=255)

                                                                                                                                           tttACACTGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCttt            <  1:3871286/150‑1 (MQ=255)

                                                                                                                                            ttACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTc           <  1:2743791/150‑1 (MQ=255)

                                                                                                                                            ttACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTc           <  1:1432865/150‑1 (MQ=255)

                                                                                                                                            ttACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTc           >  1:2102248/1‑150 (MQ=255)

                                                                                                                                            ttACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATAACGTATCGTTCATTTTGGCTTTGGAGCCTTTc           <  2:4252149/150‑1 (MQ=255)

                                                                                                                                              acacTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGAAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCAc         <  2:2918918/150‑1 (MQ=255)

                                                                                                                                               cacTGTCGTTGTTAATTAATCGTAACAAATACGTGACTCCTATGAATAAAAACGCCTCCCTTACGCTCCCGCATCAAGTACACGCTCCACGCTAAGATCGCCAGACCTAGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCAcc        >  2:2700125/1‑150 (MQ=255)

                                                                                                                                                acTGTCGTTGTTAATTAATAGTTACTAAGACGTGACTCCTATGAAAACAATCGCCTCCGTTACGCTCCCGCATCATGTAAACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGGTCATTTTTGCTTTGGATCCTTTCACcg       >  2:2641070/1‑150 (MQ=255)

                                                                                                                                                 cTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCACcgc      <  2:1975651/150‑1 (MQ=255)

                                                                                                                                                  tGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCACcgcg     >  2:4482772/1‑150 (MQ=255)

                                                                                                                                                  tGTAGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCACcgcg     >  2:3377420/1‑150 (MQ=255)

                                                                                                                                                     cGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCACCGCGCtc  >  2:3634589/1‑150 (MQ=255)

                                                                                                                                                     cGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCACCGCGCtc  <  1:4938304/150‑1 (MQ=255)

CCTTTTTTAATTTATTATACCAATCTTCTATTTTGCGCTTCCTGAACACCTTACGCCCTCAATTTTCACTCGTTGATTGATCGCCCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCGTTGTTAATTAATCGTTACTAAGACGTGACTCCTATGAATACAATCGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTATGATCGCCAGCAGTTGCAATCACGTATCGTTCATTTTGGCTTTGGAGCCTTTCACCGCGCTC  >  CP009273/2259540‑2259838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A