Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F202 I0 R1 1397 275.7 9089454 95.2% 8653160 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,257,209 C→A 40.9% E390* (GAA→TAA)  tdcC ← L‑threonine/L‑serine transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,257,2090CA40.9% 254.2 / 274.0 235E390* (GAA→TAA) tdcCL‑threonine/L‑serine transporter
Reads supporting (aligned to +/- strand):  ref base C (77/62);  new base A (46/50);  total (123/112)
Fisher's exact test for biased strand distribution p-value = 2.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01

Only 100 of 237 total aligned reads displayed.

TACGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCT  >  CP009273/3257060‑3257357
                                                                                                                                                     |                                                                                                                                                    
   gATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAAt                                                                                                                                                   >  2:2153813/1‑150 (MQ=255)
            gATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAg                                                                                                                                          >  1:4514395/1‑150 (MQ=255)
            gATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAg                                                                                                                                          <  2:3013738/150‑1 (MQ=255)
               ggTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGAt                                                                                                                                       >  1:270154/1‑150 (MQ=255)
               ggTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGAt                                                                                                                                       >  1:268177/1‑150 (MQ=255)
                   agcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTc                                                                                                                                   >  2:1752616/1‑150 (MQ=255)
                      agACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCggg                                                                                                                                >  2:3131215/1‑150 (MQ=255)
                        aCCAATCACTGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTTCGGATGGCATACATCGGCTACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGtt                                                                                                                              <  1:1956724/150‑1 (MQ=255)
                        aCCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGtt                                                                                                                              >  1:3869545/1‑150 (MQ=255)
                        aCCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGtt                                                                                                                              <  1:4200653/150‑1 (MQ=255)
                         ccAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTg                                                                                                                             >  2:4014462/1‑150 (MQ=255)
                         ccAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTg                                                                                                                             <  1:2423622/150‑1 (MQ=255)
                          cAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTgg                                                                                                                            >  2:4175810/1‑150 (MQ=255)
                           aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGc                                                                                                                           <  1:3573545/150‑1 (MQ=255)
                           aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGc                                                                                                                           <  1:874987/150‑1 (MQ=255)
                           aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGc                                                                                                                           <  2:228024/150‑1 (MQ=255)
                           aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGc                                                                                                                           <  2:1441396/150‑1 (MQ=255)
                            aTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCAGGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCg                                                                                                                          <  1:2259716/150‑1 (MQ=255)
                                cGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAgg                                                                                                                      >  2:3894939/1‑150 (MQ=255)
                                 ggTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGc                                                                                                                     >  1:2606718/1‑150 (MQ=255)
                                 ggTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGc                                                                                                                     >  2:4017461/1‑150 (MQ=255)
                                  gTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAAGAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGca                                                                                                                    <  1:2932063/150‑1 (MQ=255)
                                       aaacaCGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCaacaac                                                                                                               >  1:2418833/1‑150 (MQ=255)
                                          cacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCa                                                                                                            <  2:1607717/150‑1 (MQ=255)
                                          cacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCa                                                                                                            <  2:1142376/150‑1 (MQ=255)
                                          cacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCa                                                                                                            >  2:246932/1‑150 (MQ=255)
                                          cacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCa                                                                                                            >  1:4070055/1‑150 (MQ=255)
                                                     gacgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCa                                                                                                 <  1:4279322/150‑1 (MQ=255)
                                                     gacgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCa                                                                                                 <  2:4318428/150‑1 (MQ=255)
                                                     gacgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCa                                                                                                 <  2:2072517/150‑1 (MQ=255)
                                                       cgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatg                                                                                               <  2:290292/150‑1 (MQ=255)
                                                        gacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatga                                                                                              <  1:3992668/150‑1 (MQ=255)
                                                           cACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCAtgatga                                                                                           >  1:1996129/1‑150 (MQ=255)
                                                           cACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCAtgatga                                                                                           <  2:1915411/150‑1 (MQ=255)
                                                           cACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTAGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCAtgatga                                                                                           <  2:4483700/150‑1 (MQ=255)
                                                            aCGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGaa                                                                                          <  2:3314526/150‑1 (MQ=255)
                                                              ggTCTTTCGCCATAGACGGCGATTAACGGATGGCATACATCGGCAACAGGCACCGCAGGTATGCGATAAACGGTGCGCACATGGATTCAATCAGGTCAAGGCTGTTCGCGTTGGCTTAGGAAACAACCCAGGTGGAGACCATGATGAAGa                                                                                        >  2:3485348/1‑150 (MQ=255)
                                                              ggTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGa                                                                                        >  2:3487196/1‑150 (MQ=255)
                                                              ggTATATCGCCAGAGACGGCGCTTTACGGATGTCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGa                                                                                        >  2:700469/1‑150 (MQ=255)
                                                               gTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGAt                                                                                       >  2:1438039/1‑150 (MQ=255)
                                                                tATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATc                                                                                      <  1:1511618/150‑1 (MQ=255)
                                                                 aTTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCa                                                                                     >  1:3683878/1‑150 (MQ=255)
                                                                   ttCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATg                                                                                   >  1:2902609/1‑150 (MQ=255)
                                                                   ttCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATg                                                                                   >  2:4393116/1‑150 (MQ=255)
                                                                    tCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGc                                                                                  <  2:1172508/150‑1 (MQ=255)
                                                                    tCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGc                                                                                  >  1:3393561/1‑150 (MQ=255)
                                                                      gCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTg                                                                                <  2:1014211/150‑1 (MQ=255)
                                                                        cAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGAt                                                                              <  2:37048/150‑1 (MQ=255)
                                                                         agagACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATa                                                                             <  2:3347526/150‑1 (MQ=255)
                                                                         agagACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATa                                                                             >  1:2365620/1‑150 (MQ=255)
                                                                             aCGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAgtgt                                                                         <  2:3774166/150‑1 (MQ=255)
                                                                               ggCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTc                                                                       >  1:673903/1‑150 (MQ=255)
                                                                                 cgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAg                                                                     <  1:4379470/150‑1 (MQ=255)
                                                                                 cgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAg                                                                     <  2:115354/150‑1 (MQ=255)
                                                                                   cTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGtt                                                                   >  1:4121232/1‑150 (MQ=255)
                                                                                      tACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTAc                                                                <  1:2871544/150‑1 (MQ=255)
                                                                                        cGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTAccc                                                              <  1:3234169/150‑1 (MQ=255)
                                                                                            tGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCg                                                          <  1:2652075/150‑1 (MQ=255)
                                                                                            tGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCg                                                          <  2:2532798/150‑1 (MQ=255)
                                                                                            tGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCg                                                          <  1:1008850/150‑1 (MQ=255)
                                                                                                aTACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGacac                                                      >  1:410430/1‑150 (MQ=255)
                                                                                                aTACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGacac                                                      <  2:3312452/150‑1 (MQ=255)
                                                                                                aTACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGacac                                                      >  2:849964/1‑150 (MQ=255)
                                                                                                  aCATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACtt                                                    <  2:1922848/150‑1 (MQ=255)
                                                                                                         cAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGtttt                                             <  1:2841369/150‑1 (MQ=255)
                                                                                                         cAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGtttt                                             >  2:3164709/1‑150 (MQ=255)
                                                                                                            cAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTc                                          >  2:2231698/1‑150 (MQ=255)
                                                                                                            cAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGGTCAGTTTACCCAGCGACACTTTAGTTTTGTc                                          >  2:3670860/1‑150 (MQ=255)
                                                                                                                 acaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCtt                                     >  2:491107/1‑150 (MQ=255)
                                                                                                                  cagcagGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCttt                                    >  1:4013214/1‑150 (MQ=255)
                                                                                                                   agcagGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTta                                   <  2:2759048/150‑1 (MQ=255)
                                                                                                                    gcagGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTtat                                  <  1:1084278/150‑1 (MQ=255)
                                                                                                                     cagGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTtata                                 <  1:854450/150‑1 (MQ=255)
                                                                                                                     cagGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTtata                                 >  1:1848513/1‑150 (MQ=255)
                                                                                                                     cagGGATGCGATAATCGGAGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCTACACTTTAGTTTTGTCGCCTTtata                                 >  1:1848531/1‑150 (MQ=255)
                                                                                                                      agGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATaa                                <  2:3929920/150‑1 (MQ=255)
                                                                                                                       gggATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAc                               >  1:2229168/1‑150 (MQ=255)
                                                                                                                       gggATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAc                               >  2:1738040/1‑150 (MQ=255)
                                                                                                                       gggATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAc                               >  2:3301944/1‑150 (MQ=255)
                                                                                                                        ggATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAcc                              <  2:2168533/150‑1 (MQ=255)
                                                                                                                        ggATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAcc                              <  2:410303/150‑1 (MQ=255)
                                                                                                                            gCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAAc                          <  1:1908315/150‑1 (MQ=255)
                                                                                                                            gCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAAc                          <  1:3295144/150‑1 (MQ=255)
                                                                                                                            gCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTCTAGTTTTGTCGCCTTTATAACCAAAc                          <  1:3444122/150‑1 (MQ=255)
                                                                                                                               aTAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTc                       >  1:1192054/1‑150 (MQ=255)
                                                                                                                               aTAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTc                       >  1:1382513/1‑150 (MQ=255)
                                                                                                                               aTAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTc                       >  2:4424359/1‑150 (MQ=255)
                                                                                                                                tAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCa                      >  1:1803855/1‑150 (MQ=255)
                                                                                                                                 aaTCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAg                     >  1:2683627/1‑150 (MQ=255)
                                                                                                                                 aaTCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAg                     >  2:3951555/1‑150 (MQ=255)
                                                                                                                                   tCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTTTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGa                   <  1:3703799/150‑1 (MQ=255)
                                                                                                                                    cGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGAc                  <  1:1583435/150‑1 (MQ=255)
                                                                                                                                     ggTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGAcc                 >  1:2787169/1‑150 (MQ=255)
                                                                                                                                      gTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCa                <  2:2365620/150‑1 (MQ=255)
                                                                                                                                            ccATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCAt          <  2:2623819/150‑1 (MQ=255)
                                                                                                                                                ggCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAg      >  2:2856303/1‑150 (MQ=255)
                                                                                                                                                 gCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGa     >  2:1970615/1‑150 (MQ=255)
                                                                                                                                                   ttCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGAcc   >  1:3127422/1‑150 (MQ=255)
                                                                                                                                                   ttCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGAcc   >  2:664583/1‑150 (MQ=255)
                                                                                                                                                   ttCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGAcc   <  2:747403/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TACGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCT  >  CP009273/3257060‑3257357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A