Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,257,209 |
C→A |
9.2% |
E390* (GAA→TAA) |
tdcC ← |
L‑threonine/L‑serine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,257,209 | 0 | C | A | 9.2%
| 1063.7
/ 51.3
| 294 | E390* (GAA→TAA) | tdcC | L‑threonine/L‑serine transporter |
| Reads supporting (aligned to +/- strand): ref base C (131/136); new base A (9/18); total (140/154) |
| Fisher's exact test for biased strand distribution p-value = 1.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
Only 100 of 298 total aligned reads displayed.
ACGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCT > CP009273/3257061‑3257357
|
cGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCa > 1:3198231/1‑149 (MQ=255)
aTGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAAt < 1:2970420/149‑1 (MQ=255)
aTGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAAt < 2:2045094/149‑1 (MQ=255)
ttCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAg > 2:867875/1‑149 (MQ=255)
gATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCaa < 1:231461/149‑1 (MQ=255)
ggTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGa > 2:29989/1‑149 (MQ=255)
gTCAGCAGACCAATCACGGAAACAAACACGTTATACAGACGACCACTGAATTTCGCCAGAGACTTCGCTTTACGGATGGCATACATCGACAACAGGCACAGCAGGGATGAGATAATAGGTGCTCCCATGGCTTCAATCAGTTCAAGGAt > 1:2815928/1‑149 (MQ=255)
gcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTc < 2:1236805/149‑1 (MQ=255)
gcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTc > 2:340891/1‑149 (MQ=255)
gACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCggg < 1:3921831/149‑1 (MQ=255)
ccAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGtt < 1:2188780/149‑1 (MQ=255)
aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTgg > 1:310459/1‑149 (MQ=255)
aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTgg < 1:1989916/149‑1 (MQ=255)
aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTgg > 1:1953442/1‑149 (MQ=255)
aaTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTgg > 2:612044/1‑149 (MQ=255)
aTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGc < 1:880935/149‑1 (MQ=255)
tCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCg < 1:2024178/149‑1 (MQ=255)
cGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAg > 1:1769765/1‑149 (MQ=255)
aacaCGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCaacaac > 2:2935875/1‑149 (MQ=255)
acacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCGTACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAAcc > 1:1089219/1‑149 (MQ=255)
acacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAAcc < 1:424331/149‑1 (MQ=255)
acacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAAcc < 1:1496906/149‑1 (MQ=255)
cacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAAccc < 1:1021025/149‑1 (MQ=255)
acGTTATCCAGACGACCCCGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCa < 2:4582387/149‑1 (MQ=255)
acGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCa > 2:3493945/1‑149 (MQ=255)
tCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGa > 1:1032357/1‑149 (MQ=255)
cAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGc > 2:3605603/1‑149 (MQ=255)
aGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGTAACAACCCAGGTGGAGcc > 1:4454108/1‑149 (MQ=255)
aGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGcc < 2:4506454/149‑1 (MQ=255)
aGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGcc > 2:669014/1‑149 (MQ=255)
gacgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGccc < 1:4364631/149‑1 (MQ=255)
gacgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGccc > 2:3390529/1‑149 (MQ=255)
gacgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGccc > 2:1002034/1‑149 (MQ=255)
acgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCa < 2:1332199/149‑1 (MQ=255)
cgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCat < 1:3070276/149‑1 (MQ=255)
cgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCat < 2:302148/149‑1 (MQ=255)
gacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatg > 1:2608119/1‑149 (MQ=255)
ccACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatgat < 2:1757883/149‑1 (MQ=255)
aCGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCAtgatga > 2:3744889/1‑149 (MQ=255)
cGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGaa < 1:1728926/149‑1 (MQ=255)
cGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGaa > 1:4703890/1‑149 (MQ=255)
ggTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAg < 2:467031/149‑1 (MQ=255)
tATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGAt < 1:984221/149‑1 (MQ=255)
tATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGAt < 1:1438408/149‑1 (MQ=255)
tATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGAt < 1:3512861/149‑1 (MQ=255)
aTTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATc < 1:1898660/149‑1 (MQ=255)
tttCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCa > 1:2746724/1‑149 (MQ=255)
tttCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCa < 2:2648483/149‑1 (MQ=255)
ttCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCAt < 2:208050/149‑1 (MQ=255)
tCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATg < 1:504557/149‑1 (MQ=255)
gCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCt > 1:2663848/1‑149 (MQ=255)
gCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCt < 1:4198571/149‑1 (MQ=255)
ccAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTg > 2:4446574/1‑149 (MQ=255)
ccAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATAGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTg < 2:4733860/149‑1 (MQ=255)
gaCGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAgt > 1:3984608/1‑149 (MQ=255)
aCGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAgtg > 1:816157/1‑149 (MQ=255)
aCGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAgtg > 1:3016377/1‑149 (MQ=255)
ggCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGtt > 2:401347/1‑149 (MQ=255)
ggCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGtt < 1:3862238/149‑1 (MQ=255)
ggCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGtt < 1:2473439/149‑1 (MQ=255)
gcgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTc > 2:2214065/1‑149 (MQ=255)
gcgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTc > 1:1253304/1‑149 (MQ=255)
gcgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTc > 1:3690011/1‑149 (MQ=255)
tttACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGtt < 1:1704569/149‑1 (MQ=255)
cGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTAcc < 2:2144345/149‑1 (MQ=255)
gATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCa > 1:2388471/1‑149 (MQ=255)
aTGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAg > 2:953379/1‑149 (MQ=255)
tACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGacac > 1:834221/1‑149 (MQ=255)
aCATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACt > 2:3920291/1‑149 (MQ=255)
aCATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACt > 2:2752664/1‑149 (MQ=255)
aCATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACt > 2:1253259/1‑149 (MQ=255)
tCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTa > 1:3134399/1‑149 (MQ=255)
aaCAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGtttt < 1:3573485/149‑1 (MQ=255)
aaCAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGtttt < 1:3826755/149‑1 (MQ=255)
cacaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGcc < 2:1658825/149‑1 (MQ=255)
cacaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGcc > 2:1559395/1‑149 (MQ=255)
cacaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGcc > 2:1429808/1‑149 (MQ=255)
cacaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGcc < 1:853903/149‑1 (MQ=255)
cagcagGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCtt < 1:3741636/149‑1 (MQ=255)
cagcagGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCtt < 2:2483103/149‑1 (MQ=255)
gcagGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTta > 1:550818/1‑149 (MQ=255)
gggATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATaa > 2:3218199/1‑149 (MQ=255)
ggATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAc < 1:3711652/149‑1 (MQ=255)
ggATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAc < 1:3482118/149‑1 (MQ=255)
gATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAAcc < 2:2354574/149‑1 (MQ=255)
tGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCaa > 2:4354034/1‑149 (MQ=255)
tGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCaa < 2:3070629/149‑1 (MQ=255)
gCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCaaa < 1:4656611/149‑1 (MQ=255)
aTAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACtt > 1:1556209/1‑149 (MQ=255)
aaTCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCa < 2:1158628/149‑1 (MQ=255)
ggTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGAc < 2:1089219/149‑1 (MQ=255)
gTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGAcc < 1:3429833/149‑1 (MQ=255)
cccATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGcc > 1:923557/1‑149 (MQ=255)
ccATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAG‑CCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCCAACTTCAGGACCAGGCCAt > 2:3147008/1‑149 (MQ=255)
aTGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCAtt > 1:1120995/1‑149 (MQ=255)
tGGCTTCAATCCGGTCAAGGCTGTTCGGGTTGGCGTAGGCAACAACCCAGGAGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTAACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTc > 2:1843595/1‑149 (MQ=255)
tGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTc < 2:4145297/149‑1 (MQ=255)
tGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTc > 2:4234053/1‑149 (MQ=255)
tGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTc < 1:1643281/149‑1 (MQ=255)
cAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATACCCAAACTTCAGGACCAGGCCATTCAGACCt < 1:4308829/149‑1 (MQ=255)
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ACGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCT > CP009273/3257061‑3257357
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
