Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F78 I0 R1 626 241.3 10389380 77.7% 8072548 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,640,634 G→T 22.0% intergenic (+175/‑28) ydfV → / → flxA Qin prophage; uncharacterized protein/Qin prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,640,6340GT22.0% 474.9 / 111.8 201intergenic (+175/‑28)ydfV/flxAQin prophage; uncharacterized protein/Qin prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base G (66/90);  new base T (14/31);  total (80/121)
Fisher's exact test for biased strand distribution p-value = 2.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 205 total aligned reads displayed.

CATGCGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGAA  >  CP009273/1640490‑1640783
                                                                                                                                                |                                                                                                                                                     
    cGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCtt                                                                                                                                              <  1:1344255/150‑1 (MQ=255)
    cGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCtt                                                                                                                                              <  2:5162777/150‑1 (MQ=255)
     ggCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCttt                                                                                                                                             <  1:4563285/150‑1 (MQ=255)
         gAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTa                                                                                                                                         >  2:249305/1‑150 (MQ=255)
         gAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTa                                                                                                                                         >  2:5102937/1‑150 (MQ=255)
         gAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTa                                                                                                                                         <  2:2285090/150‑1 (MQ=255)
          aaaaTTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTaa                                                                                                                                        <  1:240751/150‑1 (MQ=255)
                 ttGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGgaga                                                                                                                                 >  1:225597/1‑150 (MQ=255)
                 ttGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGgaga                                                                                                                                 <  2:1235924/150‑1 (MQ=255)
                  tGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGaa                                                                                                                                <  2:1257579/150‑1 (MQ=255)
                      gAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCt                                                                                                                            <  2:1569820/150‑1 (MQ=255)
                       aaCGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTa                                                                                                                           <  1:1156129/150‑1 (MQ=255)
                         cGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTAtg                                                                                                                         <  1:4921026/150‑1 (MQ=255)
                         cGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTAtg                                                                                                                         <  1:2341014/150‑1 (MQ=255)
                         cGTTTACCACTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTAtg                                                                                                                         <  2:2623060/150‑1 (MQ=255)
                            ttACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTAtgtct                                                                                                                      <  1:3960893/150‑1 (MQ=255)
                             tACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTAtgtctg                                                                                                                     <  1:4462830/150‑1 (MQ=255)
                                 ccTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTcac                                                                                                                 <  1:3217446/150‑1 (MQ=255)
                                  cTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTATAAGGAGAACTCTATGTCTGTcaca                                                                                                                >  2:4137277/1‑150 (MQ=255)
                                    gTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAAt                                                                                                              >  1:2977142/1‑150 (MQ=255)
                                    gTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAAt                                                                                                              >  1:5065565/1‑150 (MQ=255)
                                    gTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAAt                                                                                                              <  1:2761665/150‑1 (MQ=255)
                                         caaGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAgg                                                                                                         >  1:92997/1‑150 (MQ=255)
                                          aaGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAggg                                                                                                        >  2:2023554/1‑150 (MQ=255)
                                               ttACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATa                                                                                                   >  1:4620990/1‑150 (MQ=255)
                                                tACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATAc                                                                                                  >  2:1112805/1‑150 (MQ=255)
                                                tACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATAc                                                                                                  <  1:4322148/150‑1 (MQ=255)
                                                 aCTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATAcc                                                                                                 <  2:3468668/150‑1 (MQ=255)
                                                  cTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCt                                                                                                <  2:442081/150‑1 (MQ=255)
                                                   tttCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTc                                                                                               >  1:4269323/1‑150 (MQ=255)
                                                    ttCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCa                                                                                              >  1:377610/1‑150 (MQ=255)
                                                    ttCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCa                                                                                              <  1:2274400/150‑1 (MQ=255)
                                                      cTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAAc                                                                                            >  2:3379658/1‑150 (MQ=255)
                                                       tGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAAcc                                                                                           >  2:3923526/1‑150 (MQ=255)
                                                       tGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAAcc                                                                                           <  2:1985414/150‑1 (MQ=255)
                                                        gAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCg                                                                                          >  1:259657/1‑150 (MQ=255)
                                                          ggCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGtt                                                                                        <  1:1403708/150‑1 (MQ=255)
                                                          ggCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGtt                                                                                        <  1:1363101/150‑1 (MQ=255)
                                                             gcgcCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTAtt                                                                                     <  2:4645883/150‑1 (MQ=255)
                                                                 cAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCaa                                                                                 <  1:2003027/150‑1 (MQ=255)
                                                                    cccGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaaca                                                                              >  1:763886/1‑150 (MQ=255)
                                                                      cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac                                                                            <  2:1678142/150‑1 (MQ=255)
                                                                      cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac                                                                            <  1:1265218/150‑1 (MQ=255)
                                                                      cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac                                                                            <  2:3975660/150‑1 (MQ=255)
                                                                      cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac                                                                            <  1:2422188/150‑1 (MQ=255)
                                                                      cgcgAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAaacaac                                                                            <  2:4271382/150‑1 (MQ=255)
                                                                         gAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTcc                                                                         <  2:4321243/150‑1 (MQ=255)
                                                                          aGGAAAACAATCTGAACATCAAACAATTAATGACACAGGAAATAAGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAACGAGAAATCTATGTCTGTCACAATTCAGGGAAATACATCAACCGTTATTTCAAACAAATcct                                                                        >  2:665738/1‑149 (MQ=255)
                                                                          aGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCg                                                                        >  2:5091648/1‑150 (MQ=255)
                                                                           ggAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGc                                                                       >  1:3918533/1‑150 (MQ=255)
                                                                                aCAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCgg                                                                  >  1:47318/1‑150 (MQ=255)
                                                                                 cAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCgga                                                                 <  2:3695261/150‑1 (MQ=255)
                                                                                     cTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCggaagga                                                             <  1:4934455/150‑1 (MQ=255)
                                                                                      tGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCACCCGTTATTTCAAACAACTCCGCCCCggaaggaa                                                            <  2:477980/150‑1 (MQ=255)
                                                                                       gAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAAc                                                           <  1:3005430/150‑1 (MQ=255)
                                                                                        aaCATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACa                                                          <  2:3546624/150‑1 (MQ=255)
                                                                                         aaataaaaCAATTAATGACACAAGAAATACGATTAAATATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGATAAATCTATGTCTTTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACAt                                                         <  1:2889811/145‑1 (MQ=255)
                                                                                           aTCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCa                                                       >  1:1465409/1‑150 (MQ=255)
                                                                                              aaaCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGaa                                                    >  2:2429856/1‑150 (MQ=255)
                                                                                              aaaCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGaa                                                    <  2:3161587/150‑1 (MQ=255)
                                                                                              aaaCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGaa                                                    >  2:2974931/1‑150 (MQ=255)
                                                                                                aaaaTTAATGACACAAGAAATACGATTAAATATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCGGGAAGGAACATCAGAAAt                                                  <  1:3938016/148‑1 (MQ=255)
                                                                                                aCAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAAt                                                  <  2:1337369/150‑1 (MQ=255)
                                                                                                 cAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATa                                                 <  2:4479674/150‑1 (MQ=255)
                                                                                                   aTTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGc                                               >  1:2046354/1‑150 (MQ=255)
                                                                                                     tAATGACACAAGAAATACGATTAAATATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCa                                             <  2:2213005/150‑1 (MQ=255)
                                                                                                     tAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCa                                             <  2:2519630/150‑1 (MQ=255)
                                                                                                      aaTGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaa                                            >  2:4413005/1‑150 (MQ=255)
                                                                                                      aaTGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaa                                            >  2:3003593/1‑150 (MQ=255)
                                                                                                       aTGACACAAGAAATACTATTAAAGTTTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGATAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaaa                                           <  1:3634596/150‑1 (MQ=255)
                                                                                                       aTGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCaaa                                           >  1:3253892/1‑150 (MQ=255)
                                                                                                          acacAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATc                                        <  2:1476548/150‑1 (MQ=255)
                                                                                                               aGAAATACGATTAAATATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAg                                   <  1:2049020/150‑1 (MQ=255)
                                                                                                                gAAATACGATTAAAGATTTTTTTGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGa                                  >  2:2257978/1‑150 (MQ=255)
                                                                                                                       gATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTc                           >  2:3186526/1‑150 (MQ=255)
                                                                                                                         ttAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAg                         <  1:5102937/150‑1 (MQ=255)
                                                                                                                         tnAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAg                         >  1:4534229/1‑150 (MQ=255)
                                                                                                                             aGATTTTTTTGTGCATGCCGATTGTGATTTTTTAAAAGGATAAATCTATGTCTGTAACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGc                     <  1:539055/150‑1 (MQ=255)
                                                                                                                             aGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGc                     >  1:1441017/1‑150 (MQ=255)
                                                                                                                              gATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGct                    >  1:1827483/1‑150 (MQ=255)
                                                                                                                              gATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGct                    <  2:3810770/150‑1 (MQ=255)
                                                                                                                                tttttttGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctga                  <  1:3623899/150‑1 (MQ=255)
                                                                                                                                 ttttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgac                 <  2:2644890/150‑1 (MQ=255)
                                                                                                                                 ttttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgac                 >  1:3392300/1‑150 (MQ=255)
                                                                                                                                  tttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgact                <  1:1230294/150‑1 (MQ=255)
                                                                                                                                  tttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgact                <  1:4028356/150‑1 (MQ=255)
                                                                                                                                   ttttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgactg               <  2:1761754/150‑1 (MQ=255)
                                                                                                                                    tttGTGCATGCCTATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgactga              >  2:4602696/1‑150 (MQ=255)
                                                                                                                                    tttGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGctgactga              >  2:1677080/1‑150 (MQ=255)
                                                                                                                                      tgtgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGaaa            >  2:739855/1‑150 (MQ=255)
                                                                                                                                       gtgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGaaaa           <  1:3879418/150‑1 (MQ=255)
                                                                                                                                        tgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAg          <  2:2281860/150‑1 (MQ=255)
                                                                                                                                        tgCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAg          >  1:221333/1‑150 (MQ=255)
                                                                                                                                         gCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGc         >  2:588518/1‑150 (MQ=255)
                                                                                                                                          cATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCt        >  1:2317446/1‑150 (MQ=255)
                                                                                                                                             gCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTgg     >  1:1530630/1‑150 (MQ=255)
                                                                                                                                              ccGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTggg    >  2:4156202/1‑150 (MQ=255)
                                                                                                                                                gATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGaa  >  2:4700467/1‑150 (MQ=255)
                                                                                                                                                gATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGaa  >  2:4718987/1‑150 (MQ=255)
                                                                                                                                                gATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGaa  >  1:3611299/1‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                                     
CATGCGGCAGAAAATTATTGCCGAACGTTTACCCCTGTCAACAAGCTTTACTTTCTGAGGCGCGCCAGCCCGCGAGGAAAACAATCTGAACATCAAACAATTAATGACACAAGAAATACGATTAAAGATTTTTTTGTGCATGCCGATAGTGCTTTTTTAAAAGGAGAAATCTATGTCTGTCACAATTCAGGGAAATACCTCAACCGTTATTTCAAACAACTCCGCCCCGGAAGGAACATCAGAAATAGCCAAAATCACAAGACAAATTCAGGTGCTGACTGAAAAGCTTGGGAA  >  CP009273/1640490‑1640783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A