Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F309 I0 R1 1697 197.2 6627756 95.7% 6342762 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,426,731 G→T 6.1% I225I (ATC→ATA)  accD ← acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,426,7310GT 6.1% 605.5 / 11.8 164I225I (ATC→ATA) accDacetyl‑CoA carboxylase, beta (carboxyltransferase) subunit
Reads supporting (aligned to +/- strand):  ref base G (82/71);  new base T (4/6);  total (87/77)
Fisher's exact test for biased strand distribution p-value = 5.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 170 total aligned reads displayed.

CAGAATGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGTTTTCGCCATC  >  CP009273/2426584‑2426878
                                                                                                                                                   |                                                                                                                                                   
cAGAATGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCTAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCg                                                                                                                                                     <  1:2674527/148‑1 (MQ=255)
cAGAATGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCg                                                                                                                                                     <  1:2675326/148‑1 (MQ=255)
cAGAATGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCg                                                                                                                                                     <  1:1922547/148‑1 (MQ=255)
   aaTGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGAtt                                                                                                                                                  <  2:707240/148‑1 (MQ=255)
   aaTGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGAtt                                                                                                                                                  <  2:707231/148‑1 (MQ=255)
    aTGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTa                                                                                                                                                 <  1:135538/148‑1 (MQ=255)
     tGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTaa                                                                                                                                                <  1:890604/148‑1 (MQ=255)
        tCGCCAGTTTCAGGCGCATTTCCGGACGACGGTCGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATACAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGc                                                                                                                                             <  1:537153/148‑1 (MQ=255)
        tCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGc                                                                                                                                             <  1:3108037/148‑1 (MQ=255)
        tCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGc                                                                                                                                             <  1:2199500/148‑1 (MQ=255)
        tCGCCAGTTTCAGGCGCATTGCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGc                                                                                                                                             <  1:3108187/148‑1 (MQ=255)
         cGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCt                                                                                                                                            <  1:2765827/148‑1 (MQ=255)
         cGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCt                                                                                                                                            >  2:2065489/1‑148 (MQ=255)
         cGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCt                                                                                                                                            >  2:2065383/1‑148 (MQ=255)
            cAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTATCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGGCTGTTAGATAACACGCGGACCCGCAAAGCCGATTAACGCTTTc                                                                                                                                         >  1:1138856/1‑148 (MQ=255)
              gTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCTATTAACGCTTTCgg                                                                                                                                       <  2:2908522/148‑1 (MQ=255)
               tttCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGt                                                                                                                                      >  1:666461/1‑148 (MQ=255)
                 tCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTc                                                                                                                                    <  2:1589526/148‑1 (MQ=255)
                  cAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCa                                                                                                                                   >  2:2534135/1‑148 (MQ=255)
                      cgcATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCTATTAACGCTTTCGGTTCAGCGa                                                                                                                               >  1:770911/1‑148 (MQ=255)
                      cgcATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCACGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACAAGCGGACCGGCAAAGCCTATTAACGCTTTCGGTTCAGCGa                                                                                                                               >  1:771116/1‑148 (MQ=255)
                       gcATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGAt                                                                                                                              <  2:3179961/148‑1 (MQ=255)
                        cATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCTATTAACGCTTTCGGTTCAGCGATg                                                                                                                             >  2:3291483/1‑148 (MQ=255)
                           ttCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCTATTAACGCTTTCGGTTCAGCGATGTTg                                                                                                                          <  1:2390436/148‑1 (MQ=255)
                              cggacgacggacgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTgaga                                                                                                                       <  2:2780529/148‑1 (MQ=255)
                                   gacggacgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGcc                                                                                                                  <  2:1469145/148‑1 (MQ=255)
                                   gacggacgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGcc                                                                                                                  <  2:3111788/148‑1 (MQ=255)
                                    acggacgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGccc                                                                                                                 >  1:1619638/1‑148 (MQ=255)
                                       gacgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGc                                                                                                              >  2:2302769/1‑148 (MQ=255)
                                         cgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCAt                                                                                                            >  2:1388884/1‑148 (MQ=255)
                                         cgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCAt                                                                                                            >  2:1116788/1‑148 (MQ=255)
                                         cgaTCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCAt                                                                                                            <  2:2291396/148‑1 (MQ=255)
                                            tCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGc                                                                                                         >  2:946515/1‑148 (MQ=255)
                                                     tCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGc                                                                                                >  2:1749018/1‑148 (MQ=255)
                                                      cgcgCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCa                                                                                               <  1:1067579/148‑1 (MQ=255)
                                                         gcCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGaa                                                                                            <  1:2329274/148‑1 (MQ=255)
                                                          ccTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGaaa                                                                                           <  1:2290010/148‑1 (MQ=255)
                                                             ttCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAacac                                                                                        >  1:3294739/1‑148 (MQ=255)
                                                              tctcGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACAcc                                                                                       >  2:323829/1‑148 (MQ=255)
                                                                 cGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGcc                                                                                    >  2:1099006/1‑148 (MQ=255)
                                                                 cGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGcc                                                                                    >  2:1098152/1‑148 (MQ=255)
                                                                   aTCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGAGGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCa                                                                                  >  1:931240/1‑148 (MQ=255)
                                                                    tCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCAt                                                                                 >  2:586648/1‑148 (MQ=255)
                                                                    tCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCAt                                                                                 <  1:3295761/148‑1 (MQ=255)
                                                                    tCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCAt                                                                                 >  1:2448915/1‑148 (MQ=255)
                                                                        gAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCAtcgtc                                                                             >  1:2367286/1‑148 (MQ=255)
                                                                        gAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCAtcgtc                                                                             >  2:1020462/1‑148 (MQ=255)
                                                                           ttCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCgtcggg                                                                          <  2:1527703/148‑1 (MQ=255)
                                                                           ttCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCgtcggg                                                                          >  2:1873719/1‑148 (MQ=255)
                                                                              aCTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCgtcgggtcg                                                                       <  2:1625682/148‑1 (MQ=255)
                                                                               cTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCTATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCgtcgggtcgg                                                                      >  1:1503630/1‑148 (MQ=255)
                                                                               cTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCgtcgggtcgg                                                                      >  1:2904213/1‑148 (MQ=255)
                                                                               cTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCgtcgggtcgg                                                                      <  1:1769140/148‑1 (MQ=255)
                                                                               cTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCgtcgggtcgg                                                                      >  1:1254680/1‑148 (MQ=255)
                                                                                 gcgcTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGggtcggtc                                                                    <  1:640449/148‑1 (MQ=255)
                                                                                 gcgcTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGggtcggtc                                                                    >  2:1267126/1‑148 (MQ=255)
                                                                                       gAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACg                                                              >  1:919334/1‑148 (MQ=255)
                                                                                       gAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACg                                                              <  1:1731632/148‑1 (MQ=255)
                                                                                       gAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACg                                                              <  1:2571613/148‑1 (MQ=255)
                                                                                       gAATCCAGGCGGCAGTTTGTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACg                                                              <  1:1731674/148‑1 (MQ=255)
                                                                                        aaTCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACgg                                                             >  2:2412393/1‑148 (MQ=255)
                                                                                        aaTCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACgg                                                             <  2:777848/148‑1 (MQ=255)
                                                                                          tCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAACGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGgag                                                           <  1:888577/148‑1 (MQ=255)
                                                                                          tCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGgag                                                           <  1:292576/148‑1 (MQ=255)
                                                                                           ccAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGgaga                                                          <  1:3210276/148‑1 (MQ=255)
                                                                                            cAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGAt                                                         <  1:1554432/148‑1 (MQ=255)
                                                                                              ggcggcAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGt                                                       <  2:3293097/148‑1 (MQ=255)
                                                                                               gcggcAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTa                                                      >  1:666867/1‑148 (MQ=255)
                                                                                                cggcAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTAc                                                     <  1:3293555/148‑1 (MQ=255)
                                                                                                     gTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCaa                                                >  1:747833/1‑148 (MQ=255)
                                                                                                      tttttCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAg                                               <  1:3159954/148‑1 (MQ=255)
                                                                                                                     cTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCAtt                                <  2:666461/148‑1 (MQ=255)
                                                                                                                      tGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCAttt                               <  1:428998/148‑1 (MQ=255)
                                                                                                                        ttCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCAttttt                             >  2:1255450/1‑148 (MQ=255)
                                                                                                                        ttCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCAttttt                             >  2:3145016/1‑148 (MQ=255)
                                                                                                                        ttCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCAttttt                             >  2:3145026/1‑148 (MQ=255)
                                                                                                                        ttCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCAttttt                             >  1:355397/1‑148 (MQ=255)
                                                                                                                         tCGATCACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCCAGCCGCGCTCCTGCATTTTTg                            >  1:905444/1‑148 (MQ=255)
                                                                                                                            aTAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCa                         <  1:1881929/148‑1 (MQ=255)
                                                                                                                             tAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAg                        >  1:2691964/1‑148 (MQ=255)
                                                                                                                             tAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAg                        >  1:2692034/1‑148 (MQ=255)
                                                                                                                                cacGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGc                     <  2:564684/148‑1 (MQ=255)
                                                                                                                                     ggACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCag                <  1:2827943/148‑1 (MQ=255)
                                                                                                                                      gACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCaga               >  1:1517865/1‑148 (MQ=255)
                                                                                                                                         cGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGt            <  1:3313002/148‑1 (MQ=255)
                                                                                                                                         cGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGt            >  1:1299912/1‑148 (MQ=255)
                                                                                                                                         cGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGt            <  1:2919081/148‑1 (MQ=255)
                                                                                                                                         cGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGt            <  1:3312661/148‑1 (MQ=255)
                                                                                                                                         cGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGt            >  1:2949266/1‑148 (MQ=255)
                                                                                                                                          ggCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGtt           <  1:1076654/148‑1 (MQ=255)
                                                                                                                                           gCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGttt          >  2:3101132/1‑148 (MQ=255)
                                                                                                                                           gCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGttt          >  2:2655227/1‑148 (MQ=255)
                                                                                                                                           gCAAAGCCGATTAACGCGTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGttt          >  2:2655280/1‑148 (MQ=255)
                                                                                                                                            cAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGtttt         >  2:432606/1‑148 (MQ=255)
                                                                                                                                            cAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGtttt         <  2:1138856/148‑1 (MQ=255)
                                                                                                                                                gCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGTTTTCGcc     >  1:513127/1‑148 (MQ=255)
                                                                                                                                                gCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGTTTTCGcc     >  1:804124/1‑148 (MQ=255)
                                                                                                                                                gCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGTTTTCGcc     >  2:2186966/1‑148 (MQ=255)
                                                                                                                                                  cGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGTTTTCGCCAt   <  2:1571766/148‑1 (MQ=255)
                                                                                                                                                   gATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGTTTTCGCCATc  <  1:226853/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CAGAATGCTCGCCAGTTTCAGGCGCATTTCCGGACGACGGACGATCATGTCGATCGCGCCTTTCTCGATCAGGAATTCACTGCGCTGGAATCCAGGCGGCAGTTTTTCGCGAACGGTCTGTTCGATAACACGCGGACCGGCAAAGCCGATTAACGCTTTCGGTTCAGCGATGTTGAGATCGCCCAGCATGGCGAAACTTGCAGAAACACCGCCCATCGTCGGGTCGGTCAGCACGGAGATGTACGGCAAGCCGCGCTCCTGCATTTTTGCCAGTGCCGCAGAGGTTTTCGCCATC  >  CP009273/2426584‑2426878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A