Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F368 I0 R1 1472 214.4 7116750 95.9% 6824963 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,552,461 A→G 6.6% N82S (AAT→AGT)  intZ → CPZ‑55 prophage; putative phage integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,552,4610AG 6.6% 602.8 / 28.1 198N82S (AAT→AGT) intZCPZ‑55 prophage; putative phage integrase
Reads supporting (aligned to +/- strand):  ref base A (88/96);  new base G (7/6);  total (96/102)
Fisher's exact test for biased strand distribution p-value = 7.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.29e-01

Only 100 of 200 total aligned reads displayed.

TGCTGGTGCATCCCAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGAT  >  CP009273/2552314‑2552604
                                                                                                                                                   |                                                                                                                                               
tGCTGGTGCATCCCAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCaa                                                                                                                                                 <  2:214638/148‑1 (MQ=255)
    ggTGCATCCCAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAGTGGa                                                                                                                                             <  1:2066290/148‑1 (MQ=255)
        cATCCCAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTa                                                                                                                                         >  2:1750284/1‑148 (MQ=255)
           cccAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAAcc                                                                                                                                      >  2:2360492/1‑148 (MQ=255)
             cAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCa                                                                                                                                    <  1:1213266/148‑1 (MQ=255)
               aCGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTCTTGCCAATGGAATTAACCCAGt                                                                                                                                  >  2:1125639/1‑148 (MQ=255)
                  gTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGa                                                                                                                               <  2:3053649/148‑1 (MQ=255)
                       aaaTACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAg                                                                                                                          <  2:1925811/148‑1 (MQ=255)
                        aaTACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGc                                                                                                                         >  2:1632216/1‑148 (MQ=255)
                           aCTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCg                                                                                                                      >  2:2887385/1‑148 (MQ=255)
                             tGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCa                                                                                                                    <  2:956247/148‑1 (MQ=255)
                             tGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCa                                                                                                                    <  2:3387747/148‑1 (MQ=255)
                                cGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAgg                                                                                                                 >  1:156034/1‑148 (MQ=255)
                                  aTTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGaa                                                                                                               <  1:205943/148‑1 (MQ=255)
                                   ttCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGaaa                                                                                                              <  2:3432327/148‑1 (MQ=255)
                                   ttCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGaaa                                                                                                              >  2:437053/1‑148 (MQ=255)
                                    tCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGaaaa                                                                                                             <  1:921481/148‑1 (MQ=255)
                                        gTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGcc                                                                                                         >  1:1773789/1‑148 (MQ=255)
                                        gTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGcc                                                                                                         >  1:3084387/1‑148 (MQ=255)
                                        gTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGcc                                                                                                         >  2:2421326/1‑148 (MQ=255)
                                          aTTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAGTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGccct                                                                                                       >  2:595220/1‑146 (MQ=255)
                                          aTTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCAt                                                                                                       >  2:2439081/1‑148 (MQ=255)
                                          aTTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCAt                                                                                                       >  2:2438624/1‑148 (MQ=255)
                                          aTTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCAt                                                                                                       <  2:2920364/148‑1 (MQ=255)
                                            tGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTg                                                                                                     <  2:1032235/148‑1 (MQ=255)
                                             ggCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGa                                                                                                    >  2:447823/1‑148 (MQ=255)
                                              gCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGAt                                                                                                   <  1:1329818/148‑1 (MQ=255)
                                              gCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCCAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGAt                                                                                                   <  2:554333/148‑1 (MQ=255)
                                               cTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTCATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATg                                                                                                  <  2:2233128/148‑1 (MQ=255)
                                               cTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATg                                                                                                  <  2:2194451/148‑1 (MQ=255)
                                               atGAATAATCGAGATTTTTTGGAGGACATTGGAGTTTTCCCGCTAATCTAACTCAATGAAGCACTCATGCGCGCGACGGAGAGCAGATCCCTTATTGGCTATTGAATTATCCCAGTGGAACAAGCCCGCTAGGAAAAAGCCATTGATg                                                                                                  <  2:420201/147‑1 (MQ=255)
                                                  aaTAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATgcgc                                                                                               >  2:1758874/1‑148 (MQ=255)
                                                   aTAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCt                                                                                              <  2:2300757/148‑1 (MQ=255)
                                                    tAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTc                                                                                             >  2:3218628/1‑148 (MQ=255)
                                                     aaaCGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCa                                                                                            <  1:2134745/148‑1 (MQ=255)
                                                      aaCGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCaa                                                                                           >  1:3298993/1‑148 (MQ=255)
                                                       aCGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAAc                                                                                          <  1:907177/148‑1 (MQ=255)
                                                       aCGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAAc                                                                                          <  2:272850/148‑1 (MQ=255)
                                                       aCGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGACCGCAAGCAAAAAGCCATTGATGCGCTCAAc                                                                                          >  1:2894688/1‑148 (MQ=255)
                                                        cGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACa                                                                                         >  1:1129176/1‑148 (MQ=255)
                                                          agagTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATg                                                                                       >  2:846565/1‑148 (MQ=255)
                                                          agagTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATg                                                                                       <  2:1326437/148‑1 (MQ=255)
                                                                tttGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCa                                                                                 >  2:3169613/1‑148 (MQ=255)
                                                                   gCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAGTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGa                                                                              <  2:2067798/148‑1 (MQ=255)
                                                                    cAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGAt                                                                             >  2:3440311/1‑148 (MQ=255)
                                                                         cATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTaag                                                                        >  1:2181824/1‑148 (MQ=255)
                                                                          aTTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTaaga                                                                       >  2:3007916/1‑148 (MQ=255)
                                                                          aTTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTaaga                                                                       >  2:3070301/1‑148 (MQ=255)
                                                                            tGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTaagaag                                                                     <  2:156034/148‑1 (MQ=255)
                                                                              gAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGt                                                                   <  1:1587896/148‑1 (MQ=255)
                                                                              gAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGt                                                                   >  2:11454/1‑148 (MQ=255)
                                                                              gAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGt                                                                   <  2:1062502/148‑1 (MQ=255)
                                                                                gTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTgg                                                                 <  2:3089907/148‑1 (MQ=255)
                                                                                gTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTgg                                                                 <  1:3233236/148‑1 (MQ=255)
                                                                                 tttACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGc                                                                <  1:2624613/148‑1 (MQ=255)
                                                                                 tttACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGc                                                                >  1:3376185/1‑148 (MQ=255)
                                                                                      ccGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAg                                                           >  2:2191934/1‑148 (MQ=255)
                                                                                       cGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGa                                                          <  1:2449454/148‑1 (MQ=255)
                                                                                        gCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTCTTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGCAGGTGGCGGAAGAc                                                         <  1:615512/148‑1 (MQ=255)
                                                                                        gCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGAc                                                         >  1:825122/1‑148 (MQ=255)
                                                                                        gCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGAc                                                         <  1:3492382/148‑1 (MQ=255)
                                                                                           aaTCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAGTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTgg                                                      <  1:1485510/148‑1 (MQ=255)
                                                                                           aaTCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTgg                                                      >  1:1137273/1‑148 (MQ=255)
                                                                                           aaTCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTgg                                                      <  1:1453830/148‑1 (MQ=255)
                                                                                            aTCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGt                                                     <  1:1770621/148‑1 (MQ=255)
                                                                                            aTCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGt                                                     >  2:1081247/1‑148 (MQ=255)
                                                                                            aTCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGt                                                     <  1:2932095/148‑1 (MQ=255)
                                                                                                cacTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGc                                                 <  2:2024069/148‑1 (MQ=255)
                                                                                                cacTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGc                                                 <  1:141918/148‑1 (MQ=255)
                                                                                                 acTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCt                                                >  1:2801267/1‑148 (MQ=255)
                                                                                                    cAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTAcc                                             >  1:923808/1‑148 (MQ=255)
                                                                                                     aaaGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCa                                            >  2:8600/1‑148 (MQ=255)
                                                                                                      aagaagCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAGTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAg                                           >  2:1968765/1‑148 (MQ=255)
                                                                                                      aagaagCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAGTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAg                                           >  2:2753505/1‑148 (MQ=255)
                                                                                                      aagaagCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAg                                           <  1:2492871/148‑1 (MQ=255)
                                                                                                         aagCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGt                                        <  2:3041671/148‑1 (MQ=255)
                                                                                                                cAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAggg                                 <  1:3216658/148‑1 (MQ=255)
                                                                                                                cAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAggg                                 <  1:2421326/148‑1 (MQ=255)
                                                                                                                   gcgcgcCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGggtgg                              >  2:2452665/1‑148 (MQ=255)
                                                                                                                      cgcCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCg                           >  1:673840/1‑148 (MQ=255)
                                                                                                                         cACGGAGAGCAGATCCCTTATTGCCAGTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGaa                        <  1:2569892/148‑1 (MQ=255)
                                                                                                                          aCGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAAt                       <  1:2555441/148‑1 (MQ=255)
                                                                                                                              agagCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTa                   <  1:3120463/148‑1 (MQ=255)
                                                                                                                               gagCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTAt                  >  1:2977302/1‑148 (MQ=255)
                                                                                                                               gagCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTAt                  >  1:1745504/1‑148 (MQ=255)
                                                                                                                                    gATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGACTCCTATGCaaa             >  2:149498/1‑148 (MQ=255)
                                                                                                                                    gATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaa             <  2:1852250/148‑1 (MQ=255)
                                                                                                                                    gATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaa             >  2:371863/1‑148 (MQ=255)
                                                                                                                                    gATCCCTTATTGCCAATGGAATTAACCCAGAGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGAATTACGAAGGTTGCGGAAGACTGGTTTTCTACCAGGGTTGAAGGGTGCTCGGAATCCTATGaaaa             >  2:371877/1‑148 (MQ=255)
                                                                                                                                     aTCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaaa            >  2:169279/1‑148 (MQ=255)
                                                                                                                                     aTCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTGGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaaa            >  2:151959/1‑148 (MQ=255)
                                                                                                                                        ccTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAg         <  1:728975/148‑1 (MQ=255)
                                                                                                                                        ccTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAg         <  2:2580964/148‑1 (MQ=255)
                                                                                                                                          ttATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTTATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGt       <  2:2793372/148‑1 (MQ=255)
                                                                                                                                          ttATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTTATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGt       <  2:785717/148‑1 (MQ=255)
                                                                                                                                             ttGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAg    <  1:107678/148‑1 (MQ=255)
                                                                                                                                              tGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCGGa   <  2:1773789/148‑1 (MQ=255)
                                                                                                                                              tGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGa   <  1:2360492/148‑1 (MQ=255)
                                                                                                                                              tGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGa   <  2:1773673/148‑1 (MQ=255)
                                                                                                                                               gCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGAt  <  1:547128/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
TGCTGGTGCATCCCAACGGTTCGAAATACTGGCGATTCAGGTATTGGCTGAATAAACGAGAGTTTTTGCAGGCCATTGGAGTTTACCCGCTAATCACACTCAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGAT  >  CP009273/2552314‑2552604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A