Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F159 I0 R1
|
879 |
305.9 |
9588012 |
96.6% |
9262019 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,628,207 |
G→A |
100% |
G110E (GGA→GAA) |
pinQ → |
Qin prophage; putative site‑specific recombinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,628,207 | 0 | G | A | 95.9%
| 416.8
/ 13.0
| 196 | G110E (GGA→GAA) | pinQ | Qin prophage; putative site‑specific recombinase |
| Reads supporting (aligned to +/- strand): ref base G (4/4); new base A (114/74); total (118/78) |
| Fisher's exact test for biased strand distribution p-value = 7.15e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 197 total aligned reads displayed.
AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAG > CP009273/1628060‑1628352
|
tggtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAat > 1:1556163/1‑150 (MQ=17)
ggtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatg < 2:3378021/150‑1 (MQ=17)
ggtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatg < 2:3961081/150‑1 (MQ=17)
gtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatga < 1:4673062/150‑1 (MQ=17)
gtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatga < 1:2272834/150‑1 (MQ=17)
tCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatgat > 2:4060716/1‑150 (MQ=17)
cAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatgatg > 2:4026116/1‑150 (MQ=17)
attgattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCa > 2:4161850/1‑150 (MQ=17)
tgattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAg < 1:1264225/150‑1 (MQ=17)
attgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTa < 1:3192883/150‑1 (MQ=32)
attgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTa > 1:631002/1‑150 (MQ=17)
ttgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTaa < 1:4336648/150‑1 (MQ=17)
ttgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTaa < 1:3496187/150‑1 (MQ=17)
gACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTc > 1:3811033/1‑150 (MQ=17)
gACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTc < 2:3030698/150‑1 (MQ=17)
cTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTc > 2:3963027/1‑150 (MQ=17)
tGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCg > 2:631380/1‑150 (MQ=17)
tGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCg < 2:2290723/150‑1 (MQ=17)
gATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCt > 1:1237476/1‑150 (MQ=32)
gATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCt < 1:298250/150‑1 (MQ=17)
tCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGa > 2:3236989/1‑150 (MQ=17)
gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt > 2:2583219/1‑150 (MQ=17)
gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt > 2:3768584/1‑150 (MQ=17)
gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt < 1:3297378/150‑1 (MQ=17)
ccTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAtt > 1:1515115/1‑150 (MQ=17)
cTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAttt > 1:3384034/1‑150 (MQ=17)
ttGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTg > 1:2689082/1‑150 (MQ=17)
ttGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTg < 1:2189147/150‑1 (MQ=17)
tGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGa > 2:2213176/1‑150 (MQ=17)
gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc < 2:150701/150‑1 (MQ=17)
gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGAACTGACCAGTCCAACAGAAAAAATGATGATTCAAGTAATTTAAGAAGTCGATGAATTTGAAc > 1:2903196/1‑150 (MQ=11)
gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCAGTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc < 2:3134777/150‑1 (MQ=17)
tGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACga < 1:3108842/150‑1 (MQ=17)
gTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACgag > 2:2867475/1‑150 (MQ=17)
tAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACgaga > 1:2833323/1‑150 (MQ=17)
tAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACgaga > 2:2945644/1‑150 (MQ=17)
aaTGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGAc < 2:1417955/150‑1 (MQ=17)
aaTGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGAc > 1:3492289/1‑150 (MQ=17)
tGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCt > 1:3774950/1‑150 (MQ=17)
gCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCtt > 1:2496259/1‑150 (MQ=17)
ggATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACt > 2:3100918/1‑150 (MQ=17)
tatCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGa > 2:1504542/1‑150 (MQ=17)
atCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGaa > 1:1971858/1‑150 (MQ=17)
atCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGaa < 1:714954/150‑1 (MQ=17)
cAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACg > 1:4356964/1‑150 (MQ=17)
ggAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCCGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCa > 2:1592619/1‑150 (MQ=17)
aaaaCAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACt > 1:3495306/1‑150 (MQ=17)
aaaCAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTc > 1:4793112/1‑150 (MQ=17)
cAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCAtt < 1:1895128/150‑1 (MQ=17)
aGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTc > 2:1763900/1‑150 (MQ=17)
aGTGGAACAACTGACCGAAACAGGTATCAGAGTGCAGTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTc < 2:2540569/150‑1 (MQ=17)
gTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTcc < 2:4098385/150‑1 (MQ=17)
tGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg > 2:510682/1‑150 (MQ=32)
tGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg > 1:2579201/1‑150 (MQ=17)
ggAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCgg > 2:760023/1‑150 (MQ=17)
caacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATa > 2:3424407/1‑150 (MQ=17)
aacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGagag > 1:4490201/1‑150 (MQ=17)
cTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTa > 1:572525/1‑150 (MQ=17)
cTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTa > 2:3831727/1‑150 (MQ=17)
gACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAag < 2:1791897/150‑1 (MQ=17)
cGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGc > 2:1881988/1‑150 (MQ=17)
cGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGc > 2:4561939/1‑150 (MQ=17)
aaaCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc > 2:3085032/1‑150 (MQ=17)
aaaCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc > 2:3485090/1‑150 (MQ=17)
aaaCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc > 2:4132178/1‑150 (MQ=17)
aaaCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc > 2:1180994/1‑150 (MQ=17)
ggTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGTACGCACTCATTCCGGGATAGTAAGAGCCCgcggc > 1:2506479/1‑150 (MQ=17)
ggTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCgcggc > 1:1423998/1‑150 (MQ=17)
gTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCgcggcg > 2:4263941/1‑150 (MQ=17)
aTCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCa > 1:4193111/1‑150 (MQ=17)
gTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGaaa < 1:2741747/150‑1 (MQ=17)
cATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACGTGAACGCACTCATTCCGGGCTAGTAAGAGCCCGCGGCGCAGGGACACGt > 2:831503/1‑150 (MQ=255)
aTTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtt > 1:1639692/1‑150 (MQ=17)
aTTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtt < 1:3924086/150‑1 (MQ=17)
ttGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGACACGttt > 2:4530609/1‑150 (MQ=17)
ttGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGttt > 2:1213150/1‑150 (MQ=17)
ttGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACACATTCCGGGATAGTAAGATCCCGCGGCGCAGGGAAACGttt > 1:26083/1‑150 (MQ=12)
tGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtttt < 1:3686917/150‑1 (MQ=17)
gcgtAGCCTTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTg < 2:4418682/147‑1 (MQ=17)
gCTTAGCCTTGGGGGGCATTGACCGGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTg < 2:75171/150‑1 (MQ=17)
gCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTg > 1:2394937/1‑150 (MQ=17)
cTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTACGGGATAGTAAGAGCCCGCGGCGCAGGGACACGTTTTgg > 1:619420/1‑150 (MQ=12)
tAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTc < 1:2170192/150‑1 (MQ=17)
aGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATATTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCg > 1:1611323/1‑150 (MQ=17)
gCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGa > 2:206026/1‑150 (MQ=17)
cATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGac < 2:1666801/150‑1 (MQ=17)
aTTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACACATTCCGGGCTAGTAAGAGCCCGCGGCGCAGGGAAACGATTTGGTCGacc > 1:91704/1‑150 (MQ=255)
tGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGaccac > 2:2919231/1‑150 (MQ=18)
ggCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCtgtg < 2:1638260/150‑1 (MQ=17)
tgacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTaaa < 2:855873/150‑1 (MQ=17)
gacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAAt > 2:106372/1‑150 (MQ=17)
acctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATg < 1:559966/150‑1 (MQ=17)
tgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCCGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaag > 2:1225495/1‑150 (MQ=17)
tgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaag < 1:3768584/150‑1 (MQ=17)
tgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaag < 2:3335954/150‑1 (MQ=17)
ccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAAc < 2:3628903/150‑1 (MQ=17)
ccAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGaaa < 1:3989156/150‑1 (MQ=17)
cAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAAc > 1:2367592/1‑150 (MQ=17)
aCAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAg < 1:1036981/150‑1 (MQ=17)
aCAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAg < 2:1299722/150‑1 (MQ=17)
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AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAG > CP009273/1628060‑1628352
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
