Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F55 I0 R1
|
519 |
344.2 |
11360120 |
95.0% |
10792114 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,628,207 |
G→A |
100% |
G110E (GGA→GAA) |
pinQ → |
Qin prophage; putative site‑specific recombinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,628,207 | 0 | G | A | 95.2%
| 645.3
/ 28.5
| 312 | G110E (GGA→GAA) | pinQ | Qin prophage; putative site‑specific recombinase |
| Reads supporting (aligned to +/- strand): ref base G (7/8); new base A (133/164); total (140/172) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 315 total aligned reads displayed.
AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGG > CP009273/1628060‑1628356
|
attgtgGTTATATATTGATTGTGACAAAACTGGATCGCCTTGGTTGTATTGCTATGGTTATCAGGTAAACAGTGTAACAACTGACCGAAACAGTTATCTGAGTGAATTGCTTAGCATTTGTGGTCATTGAGCTGTCCTGTCCATCAGaaa < 2:1480696/148‑1 (MQ=2)
tggtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAat < 2:3765026/150‑1 (MQ=32)
ggtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatg > 2:3537297/1‑150 (MQ=17)
tgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgat < 1:1004029/150‑1 (MQ=17)
aTCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatga < 1:3315653/150‑1 (MQ=17)
tCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatgat < 1:3761305/150‑1 (MQ=17)
aaTTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGc > 1:1541593/1‑150 (MQ=17)
gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt > 2:3294676/1‑150 (MQ=17)
gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt > 2:1750695/1‑150 (MQ=17)
attgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTa < 2:2103257/150‑1 (MQ=17)
attgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTa > 1:1418463/1‑150 (MQ=17)
tgtgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAt < 2:2903904/150‑1 (MQ=17)
gtgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAtt > 1:515633/1‑150 (MQ=17)
gtgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAtt < 2:4837722/150‑1 (MQ=17)
aCAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTca < 1:5347932/150‑1 (MQ=17)
cAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTcag > 2:4942990/1‑150 (MQ=17)
aaaCTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTcagca > 1:1366651/1‑150 (MQ=17)
taCTGGATCGCCTTGTTTTTAATGCAATGGATATCTGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTcagcag < 2:4439271/149‑1 (MQ=255)
aaCTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTcagcag < 2:713734/150‑1 (MQ=17)
aTCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTg > 2:2834334/1‑150 (MQ=17)
gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt > 2:5359216/1‑150 (MQ=17)
cTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAttt < 1:3197099/150‑1 (MQ=17)
ttGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTg > 1:5471893/1‑150 (MQ=17)
tGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGa < 1:499898/150‑1 (MQ=17)
ggTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGaa < 1:3722564/150‑1 (MQ=17)
gTTGTAATGCAATGTATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc < 1:4728443/150‑1 (MQ=17)
gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc < 2:2509341/150‑1 (MQ=17)
aaTGCACTGGATATCAGGAAAACAGTGGACCAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGAc > 2:2348410/1‑150 (MQ=12)
gCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCtt < 1:2065778/150‑1 (MQ=32)
cAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCttt > 2:3989596/1‑150 (MQ=17)
aaTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCtttt < 2:3281842/150‑1 (MQ=17)
aTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTa < 2:653790/150‑1 (MQ=17)
gATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGAATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCTCTGAATTTGAACGAGACCTTGTACtt > 2:4746353/1‑150 (MQ=255)
atatCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTg < 2:1552647/150‑1 (MQ=17)
tatCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGa < 1:418207/150‑1 (MQ=17)
cAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACg < 2:1920519/150‑1 (MQ=17)
aGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGc > 1:4457752/1‑150 (MQ=17)
aGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGc < 2:4142204/150‑1 (MQ=17)
ggAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCa > 1:735985/1‑150 (MQ=17)
ggAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCa > 1:3612138/1‑150 (MQ=17)
aaaaCAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACt < 1:1651179/150‑1 (MQ=17)
aaaCAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTc > 1:3376792/1‑150 (MQ=17)
aaaCAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTc > 1:2835176/1‑150 (MQ=17)
tGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg > 1:2631027/1‑150 (MQ=17)
ggAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCgg > 1:5545664/1‑150 (MQ=17)
aacaacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGa < 2:4964120/150‑1 (MQ=17)
caacTGACCGAAACAGTTATCAGAGTGCATTGCTTAGCATTGGGGTGAATTGACCTGACCATTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATa < 2:1717038/150‑1 (MQ=255)
caacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATa < 1:5085143/150‑1 (MQ=32)
aacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAg > 2:201243/1‑150 (MQ=17)
cTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTa > 1:481104/1‑150 (MQ=17)
tGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTaa < 2:3588804/150‑1 (MQ=17)
gACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAag > 2:5303281/1‑150 (MQ=17)
gACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAag < 1:2323772/150‑1 (MQ=17)
cGAAACCGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGCCCTGACCAGTCCAACAGAAAAAATGATGAGGCAAGTAATTTCAGCAGTCGCTGAAATTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGc < 2:3016873/150‑1 (MQ=11)
aaaCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc > 2:5541611/1‑150 (MQ=17)
aaaCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc < 2:2420506/150‑1 (MQ=17)
aaaCAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc > 2:4878703/1‑150 (MQ=17)
aGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCgcgg > 1:3994097/1‑150 (MQ=17)
ggTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCgcggc < 1:5384991/150‑1 (MQ=32)
aTCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCa > 2:1426143/1‑150 (MQ=17)
aTCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATATGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCa > 1:1911900/1‑150 (MQ=17)
cAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAgg < 2:516536/150‑1 (MQ=17)
cAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAgg > 2:4333075/1‑150 (MQ=17)
agagTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAggg < 2:1366663/150‑1 (MQ=17)
agTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGaa > 1:5529875/1‑150 (MQ=17)
gTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTATTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGaaa > 2:4222972/1‑150 (MQ=17)
tGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAAc < 1:1128161/150‑1 (MQ=17)
tGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAAc < 1:3092839/150‑1 (MQ=17)
gCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACg > 1:1479290/1‑150 (MQ=17)
gCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACg > 2:3152975/1‑150 (MQ=17)
ttGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCGGGGAAACGttt < 1:2812578/150‑1 (MQ=17)
tGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtttt < 1:4502009/150‑1 (MQ=17)
cTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTgg < 2:3456339/150‑1 (MQ=17)
cTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTgg > 1:2358717/1‑150 (MQ=17)
ttAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGt < 2:5599804/150‑1 (MQ=17)
tAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTc < 2:2703536/150‑1 (MQ=17)
aGCATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCg < 1:3866169/150‑1 (MQ=17)
cATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGCTGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGac < 1:5606143/150‑1 (MQ=17)
cATTGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGac < 2:948440/150‑1 (MQ=17)
ttGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGacca < 1:2150926/150‑1 (MQ=17)
ggggggCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGaccacc > 2:448933/1‑150 (MQ=21)
ggggCATTGACCTGACCCGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCtg > 2:1044021/1‑150 (MQ=18)
gggCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCtgt < 1:4246901/150‑1 (MQ=17)
gggAATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCCAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCtgt < 1:2454264/150‑1 (MQ=12)
gCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTgtgt < 1:1105274/150‑1 (MQ=17)
gCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTgtgt > 1:5204726/1‑150 (MQ=17)
cATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGtt > 2:2894129/1‑150 (MQ=17)
ttGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTaa > 1:4634959/1‑150 (MQ=17)
tgacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTaaa < 2:2221637/150‑1 (MQ=17)
tgacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTaaa > 2:1119212/1‑150 (MQ=17)
acctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATg < 2:3812237/150‑1 (MQ=17)
actgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATga < 2:831216/149‑1 (MQ=17)
gaccAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGAGAGTACGAGCCCGCGGCGCAGGGACACGTTTTGGTCGACCACCTGTGTTAAATgaaga > 2:3316824/1‑150 (MQ=12)
gaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaaga > 1:1733691/1‑150 (MQ=17)
cAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACa > 2:4586533/1‑150 (MQ=17)
gTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGa < 2:1307326/150‑1 (MQ=17)
tCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGaa > 2:355070/1‑150 (MQ=32)
tCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGaa > 1:3010859/1‑150 (MQ=17)
ccAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGACGAACAGaaa > 2:3204659/1‑150 (MQ=17)
aaCAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACa > 1:4566873/1‑150 (MQ=32)
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AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACAGGCGG > CP009273/1628060‑1628356
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
