Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F527 I0 R1 1651 322.4 10661268 95.2% 10149527 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,628,207 G→A 100% G110E (GGA→GAA)  pinQ → Qin prophage; putative site‑specific recombinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,628,2070GA100.0% 680.4 / NA 296G110E (GGA→GAA) pinQQin prophage; putative site‑specific recombinase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (152/144);  total (152/144)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 299 total aligned reads displayed.

AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACA  >  CP009273/1628060‑1628351
                                                                                                                                                    |                                                                                                                                                
aaTGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGaaa                                                                                                                                                >  1:3326485/1‑150 (MQ=17)
    tggtgATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAat                                                                                                                                            <  2:2185002/150‑1 (MQ=17)
        gATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatg                                                                                                                                        <  1:1560062/150‑1 (MQ=17)
        gATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAatgatg                                                                                                                                        >  1:173116/1‑150 (MQ=17)
             attgattgTGACCAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCa                                                                                                                                   <  1:2464676/150‑1 (MQ=17)
                gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt                                                                                                                                >  1:1100043/1‑150 (MQ=17)
                gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt                                                                                                                                <  2:5169425/150‑1 (MQ=17)
                gattgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTGAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGt                                                                                                                                >  2:2776789/1‑150 (MQ=17)
                 attgTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTa                                                                                                                               >  1:5270371/1‑150 (MQ=17)
                   tgtgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAt                                                                                                                             <  1:835018/150‑1 (MQ=17)
                    gtgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAtt                                                                                                                            >  2:1177476/1‑150 (MQ=17)
                     tgACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAAttt                                                                                                                           <  1:2126816/150‑1 (MQ=17)
                              tGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCg                                                                                                                  >  2:1138160/1‑150 (MQ=17)
                              tGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCg                                                                                                                  >  1:885971/1‑150 (MQ=17)
                                gATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCt                                                                                                                >  2:3974776/1‑150 (MQ=17)
                                gATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGACAGTAATTTCAGCAGTCGCt                                                                                                                >  2:692829/1‑150 (MQ=12)
                                  tCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGa                                                                                                              <  1:3151790/150‑1 (MQ=17)
                                   cGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGaa                                                                                                             <  2:631290/150‑1 (MQ=17)
                                   cGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGaa                                                                                                             <  1:808408/150‑1 (MQ=17)
                                    gCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAAt                                                                                                            >  1:3505253/1‑150 (MQ=17)
                                          gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGCGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc                                                                                                      <  2:1448112/150‑1 (MQ=17)
                                          gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc                                                                                                      >  1:1681830/1‑150 (MQ=17)
                                          gTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAc                                                                                                      <  2:2663767/150‑1 (MQ=17)
                                           ttGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACg                                                                                                     <  2:4713810/150‑1 (MQ=17)
                                           ttGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACg                                                                                                     >  1:4220725/1‑150 (MQ=17)
                                                  gCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCtt                                                                                              <  1:2576381/150‑1 (MQ=17)
                                                    aaTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCtttt                                                                                            <  2:2845963/150‑1 (MQ=17)
                                                     aTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTa                                                                                           >  2:4334384/1‑150 (MQ=17)
                                                     aTGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTa                                                                                           >  1:122811/1‑150 (MQ=17)
                                                       ggATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACt                                                                                         <  2:1759325/150‑1 (MQ=17)
                                                       ggATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACt                                                                                         <  2:1717791/150‑1 (MQ=17)
                                                       ggATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACt                                                                                         <  1:2845794/150‑1 (MQ=17)
                                                         atatCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTg                                                                                       >  1:1025640/1‑150 (MQ=17)
                                                           atCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGaa                                                                                     >  2:3853175/1‑150 (MQ=17)
                                                             cAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACg                                                                                   >  2:2539245/1‑150 (MQ=17)
                                                             cAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACg                                                                                   <  2:2671266/150‑1 (MQ=17)
                                                             cAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACg                                                                                   >  1:2041480/1‑150 (MQ=17)
                                                              aGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGc                                                                                  >  2:2051995/1‑150 (MQ=17)
                                                                    aCAGTGGCACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCAt                                                                            <  1:3859025/150‑1 (MQ=17)
                                                                     cAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCAtt                                                                           <  2:3052366/150‑1 (MQ=17)
                                                                      aGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTc                                                                          >  2:1972826/1‑150 (MQ=17)
                                                                       gTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTcc                                                                         <  1:717545/150‑1 (MQ=17)
                                                                       gTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTcc                                                                         >  2:1667924/1‑150 (MQ=17)
                                                                        tGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg                                                                        <  2:3654797/150‑1 (MQ=17)
                                                                         ggAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg                                                                        <  2:3301577/150‑1 (MQ=12)
                                                                          gAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCggg                                                                      >  2:1397325/1‑150 (MQ=17)
                                                                          gAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCggg                                                                      <  2:129902/150‑1 (MQ=17)
                                                                             caacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATa                                                                   >  2:782611/1‑150 (MQ=17)
                                                                             caacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATa                                                                   <  2:1088206/150‑1 (MQ=17)
                                                                              aacTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAg                                                                  >  1:375075/1‑150 (MQ=17)
                                                                                 tGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTaa                                                               >  2:3558410/1‑150 (MQ=17)
                                                                                  gACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAag                                                              >  2:2449245/1‑150 (MQ=17)
                                                                                   aCCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAaga                                                             <  2:4966637/150‑1 (MQ=17)
                                                                                     cGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGc                                                           <  2:2873719/150‑1 (MQ=17)
                                                                                     cGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGc                                                           >  1:1989732/1‑150 (MQ=17)
                                                                                      gAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGcc                                                          >  1:4763432/1‑150 (MQ=17)
                                                                                       aaaCAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACATAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGATACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc                                                         <  2:4921595/150‑1 (MQ=12)
                                                                                       aaaCAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGccc                                                         <  1:2194821/150‑1 (MQ=17)
                                                                                        aaCAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCcg                                                        <  2:1029146/150‑1 (MQ=17)
                                                                                        aaCAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCcg                                                        <  1:3600862/150‑1 (MQ=17)
                                                                                          cAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCcgcg                                                      >  2:3175426/1‑150 (MQ=17)
                                                                                          cAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCcgcg                                                      >  1:4082611/1‑150 (MQ=17)
                                                                                             gTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCgcggcg                                                   >  2:91405/1‑150 (MQ=17)
                                                                                             gTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCgcggcg                                                   <  1:5307538/150‑1 (MQ=17)
                                                                                                 cAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAgg                                               >  2:4456493/1‑150 (MQ=17)
                                                                                                  agagTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAggg                                              >  2:110991/1‑150 (MQ=17)
                                                                                                      tGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAAc                                          <  1:2721109/150‑1 (MQ=17)
                                                                                                        cATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGt                                        >  2:4596554/1‑150 (MQ=17)
                                                                                                          ttGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGttt                                      <  1:1509685/150‑1 (MQ=17)
                                                                                                           tGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGtttt                                     <  1:3946695/150‑1 (MQ=17)
                                                                                                            gCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTg                                    <  2:2934808/150‑1 (MQ=17)
                                                                                                             cTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTTAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTgg                                   >  1:1858535/1‑150 (MQ=17)
                                                                                                             cTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTgg                                   >  1:1157634/1‑150 (MQ=17)
                                                                                                             cTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAAAGAGACCTTTTACTTGAACGCACACATTCCGGGATAGTAAGAGCCCGCGGCGCACGGACACGtttttg                                   >  1:4038719/1‑148 (MQ=11)
                                                                                                               tAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATTCAAGTAATTTCAGCAGTCGCTGAATTTGAACGATACCTTTTAATTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGAAGGGAAAAGTTTTGGTc                                 >  1:5109558/1‑150 (MQ=11)
                                                                                                                   aTT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGTTGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGacc                             >  2:3123188/1‑150 (MQ=17)
                                                                                                                   aTT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGacc                             >  2:5306041/1‑150 (MQ=17)
                                                                                                                   aTT‑GGGGGGCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGacc                             >  2:2602556/1‑150 (MQ=17)
                                                                                                                       ggggggCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGaccacc                          >  2:507556/1‑150 (MQ=21)
                                                                                                                          gggCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCtgt                       <  1:4933764/150‑1 (MQ=17)
                                                                                                                           ggCATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCtgtg                      >  1:3045345/1‑150 (MQ=17)
                                                                                                                             cATTGACCTGACCAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGtt                    <  2:209484/150‑1 (MQ=17)
                                                                                                                                tgacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTaaa                 >  2:2212108/1‑150 (MQ=17)
                                                                                                                                tgacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTaaa                 >  2:4172239/1‑150 (MQ=17)
                                                                                                                                 gacctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAAt                >  1:2892314/1‑150 (MQ=17)
                                                                                                                                  acctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCTGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCTCTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATg               <  2:3698148/150‑1 (MQ=12)
                                                                                                                                   cctgaccAGTCCAACAGAAAAATTGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATga              <  1:3689983/150‑1 (MQ=17)
                                                                                                                                    ctgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaa             >  2:3363255/1‑150 (MQ=17)
                                                                                                                                     tgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaag            >  1:4363788/1‑150 (MQ=17)
                                                                                                                                     tgaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaag            >  1:500927/1‑150 (MQ=17)
                                                                                                                                      gaccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCAATCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATgaaga           >  1:5155653/1‑150 (MQ=17)
                                                                                                                                        ccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAAc         <  1:696368/150‑1 (MQ=17)
                                                                                                                                        ccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAAc         >  1:2040849/1‑150 (MQ=17)
                                                                                                                                        ccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAAc         <  2:1884523/150‑1 (MQ=17)
                                                                                                                                        ccAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAAc         >  2:2239356/1‑150 (MQ=17)
                                                                                                                                         cAGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACa        >  1:3781567/1‑150 (MQ=17)
                                                                                                                                          aGTCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAg       <  2:3804107/150‑1 (MQ=17)
                                                                                                                                            tCCAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAATAGCCCGCGGCGCAGGGAAACGTTTTGGTAGACCACCTTTTTTAAATGAAGAACAGaa     >  1:631362/1‑150 (MQ=11)
                                                                                                                                             ccAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGaaa    >  1:3217167/1‑150 (MQ=17)
                                                                                                                                             ccAACAGAAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGaaa    >  1:457958/1‑150 (MQ=17)
                                                                                                                                                    |                                                                                                                                                
AATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATT‑GGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAATGAAGAACAGAAACA  >  CP009273/1628060‑1628351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A