Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F159 I0 R1 879 305.9 9588012 96.6% 9262019 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,271,906 C→T 34.4% E366E (GAG→GAA)  yjcF ← pentapeptide repeats protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,271,9060CT34.4% 260.5 / 194.2 192E366E (GAG→GAA) yjcFpentapeptide repeats protein
Reads supporting (aligned to +/- strand):  ref base C (58/68);  new base T (28/38);  total (86/106)
Fisher's exact test for biased strand distribution p-value = 6.50e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 194 total aligned reads displayed.

GCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATAACCATTTCGAGGAACG  >  CP009273/4271757‑4272054
                                                                                                                                                     |                                                                                                                                                    
gCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGcc                                                                                                                                                      <  1:766041/150‑1 (MQ=255)
 cATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCt                                                                                                                                                     >  2:3903368/1‑150 (MQ=255)
 cATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCt                                                                                                                                                     >  2:1495415/1‑150 (MQ=255)
  aTGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTc                                                                                                                                                    <  2:3147745/150‑1 (MQ=255)
   tGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCa                                                                                                                                                   >  1:1759767/1‑150 (MQ=255)
     aaGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATc                                                                                                                                                 >  2:467264/1‑150 (MQ=255)
        aTTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGaa                                                                                                                                              <  1:484007/150‑1 (MQ=255)
        aTTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGaa                                                                                                                                              >  1:322669/1‑150 (MQ=255)
         ttATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGaaa                                                                                                                                             >  1:1042049/1‑150 (MQ=255)
          tATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAAt                                                                                                                                            <  1:2837822/150‑1 (MQ=255)
           aTCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAAtt                                                                                                                                           >  2:4305814/1‑150 (MQ=255)
              cTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAac                                                                                                                                        >  1:2331737/1‑150 (MQ=255)
               tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAaca                                                                                                                                       <  2:3800748/150‑1 (MQ=255)
               tCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAaca                                                                                                                                       >  2:2202554/1‑150 (MQ=255)
                cAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAacac                                                                                                                                      <  1:3947554/150‑1 (MQ=255)
                cAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAacac                                                                                                                                      <  1:2447736/150‑1 (MQ=255)
                cAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAacac                                                                                                                                      <  1:1453290/150‑1 (MQ=255)
                   tttGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGAt                                                                                                                                   <  1:4773588/150‑1 (MQ=255)
                    ttGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATa                                                                                                                                  <  1:302886/150‑1 (MQ=255)
                     tgtgACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATag                                                                                                                                 <  1:3982666/150‑1 (MQ=255)
                     tgtgACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATag                                                                                                                                 <  1:4092100/150‑1 (MQ=255)
                     tgtgACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATag                                                                                                                                 >  2:1586089/1‑150 (MQ=255)
                     tgtgACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATag                                                                                                                                 <  1:3047432/150‑1 (MQ=255)
                          cATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACg                                                                                                                            <  1:2309661/150‑1 (MQ=255)
                                   aTGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTaaa                                                                                                                   >  1:282112/1‑150 (MQ=255)
                                   aTGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTaaa                                                                                                                   <  2:2967558/150‑1 (MQ=255)
                                    tGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAAc                                                                                                                  >  1:2956940/1‑150 (MQ=255)
                                    tGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAAc                                                                                                                  <  1:3861779/150‑1 (MQ=255)
                                         ggCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTACTGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCa                                                                                                             <  2:3575967/150‑1 (MQ=255)
                                         ggCACAATCTTCTTCAAAGAATGTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCa                                                                                                             <  1:2657819/150‑1 (MQ=255)
                                             caATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCt                                                                                                         <  1:3064054/150‑1 (MQ=255)
                                              aaTCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCtt                                                                                                        <  2:4069382/150‑1 (MQ=255)
                                              aaTCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCtt                                                                                                        <  2:1007704/150‑1 (MQ=255)
                                                tcttctTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCtttt                                                                                                      <  1:3802004/150‑1 (MQ=255)
                                                  ttcttcAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAAAATCCAGGCTTTTGt                                                                                                    >  2:2229549/1‑150 (MQ=255)
                                                    cttcAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTa                                                                                                  <  1:2920753/150‑1 (MQ=255)
                                                     ttcAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTaa                                                                                                 <  1:4662580/150‑1 (MQ=255)
                                                      tcAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTaaa                                                                                                <  1:1620076/150‑1 (MQ=255)
                                                         aaGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAaaca                                                                                             <  2:684336/150‑1 (MQ=255)
                                                           gAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAaacaga                                                                                           >  2:3047021/1‑150 (MQ=255)
                                                               ttCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAaacagaacag                                                                                       >  1:3379022/1‑150 (MQ=255)
                                                               ttCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAaacagaacag                                                                                       >  1:4244042/1‑150 (MQ=255)
                                                                tCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGt                                                                                      <  2:1108608/150‑1 (MQ=255)
                                                                  tGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTg                                                                                    >  1:3372362/1‑150 (MQ=255)
                                                                  tGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTg                                                                                    >  2:21900/1‑150 (MQ=255)
                                                                   gTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGa                                                                                   <  2:4318835/150‑1 (MQ=255)
                                                                    tAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGaa                                                                                  >  2:4493852/1‑150 (MQ=255)
                                                                       tgtTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATg                                                                               >  1:3848883/1‑150 (MQ=255)
                                                                        gtTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATgg                                                                              <  2:2229396/150‑1 (MQ=255)
                                                                         ttACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGc                                                                             <  2:2614923/150‑1 (MQ=255)
                                                                            ccAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAAt                                                                          <  2:2007116/150‑1 (MQ=255)
                                                                                 atatCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCtt                                                                     >  2:878713/1‑150 (MQ=255)
                                                                                  tatCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTa                                                                    >  2:4233222/1‑150 (MQ=255)
                                                                                   atCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTaa                                                                   <  1:4416218/150‑1 (MQ=255)
                                                                                   atCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTaa                                                                   <  1:337686/150‑1 (MQ=255)
                                                                                   atCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTaa                                                                   >  2:2860770/1‑150 (MQ=255)
                                                                                   atCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTaa                                                                   <  1:2201186/150‑1 (MQ=255)
                                                                                     cACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAAt                                                                 <  1:2141077/150‑1 (MQ=255)
                                                                                      aCTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAAtt                                                                <  2:2244/150‑1 (MQ=255)
                                                                                      aCTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAAtt                                                                <  1:2270317/150‑1 (MQ=255)
                                                                                      aCTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAAtt                                                                >  2:4166086/1‑150 (MQ=255)
                                                                                       cTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTg                                                               >  2:2271344/1‑150 (MQ=255)
                                                                                          ttAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCa                                                            <  1:1565665/150‑1 (MQ=255)
                                                                                           tAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCat                                                           >  1:276502/1‑150 (MQ=255)
                                                                                            aaTGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCatt                                                          >  2:3488102/1‑150 (MQ=255)
                                                                                            aaTGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCatt                                                          >  2:4607142/1‑150 (MQ=255)
                                                                                             aTGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCatta                                                         >  2:305876/1‑150 (MQ=255)
                                                                                               ggAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCattatt                                                       >  1:1431703/1‑150 (MQ=255)
                                                                                                gagaTATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCAttatta                                                      >  2:2266278/1‑150 (MQ=255)
                                                                                                gagaTATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTAGAAATGGCAATTGCTTAAATTGGCAttatta                                                      >  2:3201888/1‑150 (MQ=255)
                                                                                                 agaTATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTaa                                                     <  1:3691225/150‑1 (MQ=255)
                                                                                                 agaTATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTaa                                                     >  1:2430694/1‑150 (MQ=255)
                                                                                                 agaTATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTaa                                                     <  2:2820611/150‑1 (MQ=255)
                                                                                                  gaTATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTaaa                                                    <  1:367429/150‑1 (MQ=255)
                                                                                                    tatTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAAt                                                  >  1:1338599/1‑150 (MQ=255)
                                                                                                    tatTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAAt                                                  <  2:4361680/150‑1 (MQ=255)
                                                                                                       tttCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTaa                                               >  1:2194917/1‑150 (MQ=255)
                                                                                                       tttCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTaa                                               >  2:3247296/1‑150 (MQ=255)
                                                                                                            tCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTa                                          >  1:3921300/1‑150 (MQ=255)
                                                                                                            tCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTa                                          >  2:2739956/1‑150 (MQ=255)
                                                                                                            tCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTa                                          <  2:2018175/150‑1 (MQ=255)
                                                                                                              accacGGAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGc                                        >  2:1315765/1‑150 (MQ=255)
                                                                                                              accacGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGc                                        >  1:1069409/1‑150 (MQ=255)
                                                                                                                   ggAGAATGGTAATACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCatat                                   >  2:3294703/1‑150 (MQ=255)
                                                                                                                    gagaATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATAtt                                  <  1:1586089/150‑1 (MQ=255)
                                                                                                                    gagaATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATAtt                                  <  1:20161/150‑1 (MQ=255)
                                                                                                                    gagaATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATAtt                                  <  1:20243/150‑1 (MQ=255)
                                                                                                                     agaATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTa                                 <  1:534304/150‑1 (MQ=255)
                                                                                                                       aaTGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTaga                               <  2:1354969/150‑1 (MQ=255)
                                                                                                                       aaTGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTaga                               >  1:511976/1‑150 (MQ=255)
                                                                                                                              aTACCCATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTa                        >  2:703559/1‑150 (MQ=255)
                                                                                                                                 cccATTCCCTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACat                     >  1:4667347/1‑150 (MQ=255)
                                                                                                                                  ccATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACata                    <  2:3936576/150‑1 (MQ=255)
                                                                                                                                      tCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTTGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATaaa                >  1:829848/1‑149 (MQ=255)
                                                                                                                                      tCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACAtatacc                <  1:1170975/150‑3 (MQ=255)
                                                                                                                                        ccTGGACGCTAGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATAACCa              <  2:2955837/150‑1 (MQ=255)
                                                                                                                                           ggACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATAACCAttt           <  1:2978332/150‑1 (MQ=255)
                                                                                                                                                  aGCTTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATAACCATTTCGAGGaa    >  2:2471961/1‑150 (MQ=255)
                                                                                                                                                   gCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATAACCATTTCGAGGAAc   <  1:3297214/150‑1 (MQ=255)
                                                                                                                                                    ccTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATAACCATTTCGAGGAACg  >  2:1523623/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCATGAAGATTATCCTCAGTTTGTGACATGCCAGTATGAGTGGCACAATCTTCTTCAAAGAATTTCTGTAGTGTTACCAGGATATCACTATTAATGGAGATATTTTCCTCACCACGGAGAATGGTAATACCCATTCCCTGGACGCTAGCCTCATCGAAATTAACACGATAGAGACGGATATTAAACATCCAGGCTTTTGTTAAAACAGAACAGTTGAAATGGCAATTGCTTAAATTGGCATTATTAAAATTAACATTAGCCATATTAGAGTCGGTACATATAACCATTTCGAGGAACG  >  CP009273/4271757‑4272054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A