Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F342 I0 R1
|
1331 |
225.9 |
7641038 |
95.8% |
7320114 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,047,301 |
G→T |
14.2% |
T300N (ACC→AAC) |
pepP ← |
proline aminopeptidase P II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,047,301 | 0 | G | T | 14.2%
| 705.4
/ 61.4
| 223 | T300N (ACC→AAC) | pepP | proline aminopeptidase P II |
| Reads supporting (aligned to +/- strand): ref base G (93/98); new base T (12/20); total (105/118) |
| Fisher's exact test for biased strand distribution p-value = 2.58e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 227 total aligned reads displayed.
AAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCGCGCATT > CP009273/3047154‑3047447
|
aagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTgg < 1:3002649/148‑1 (MQ=255)
agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGt < 2:357116/148‑1 (MQ=255)
aaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGttt < 2:2593166/148‑1 (MQ=255)
agGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCg > 1:1972060/1‑148 (MQ=255)
agGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCg < 1:156746/148‑1 (MQ=255)
ggACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCga > 1:3101985/1‑148 (MQ=255)
ggACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACGTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCga < 1:285229/148‑1 (MQ=255)
gACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCgag < 2:3101913/148‑1 (MQ=255)
gACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCgag < 2:2885596/148‑1 (MQ=255)
gACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCgag > 2:255784/1‑148 (MQ=255)
gACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCgag < 1:1696867/148‑1 (MQ=255)
aCGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCgaga < 2:11726/148‑1 (MQ=255)
gggCGTTCTGAGCGATCAGTTCATCAACATCACCTGTCAGGATGCCGAGATTTACCAGGCCGCTAACCATGATGCGCACCACTCCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTc < 2:1371051/148‑1 (MQ=255)
cGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAg > 2:1423996/1‑148 (MQ=255)
ttCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGca > 1:3331383/1‑148 (MQ=255)
ttCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGca > 1:1400271/1‑148 (MQ=255)
tGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACaa < 2:1600400/148‑1 (MQ=255)
gAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAAt > 1:2862373/1‑148 (MQ=255)
gAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAAt > 1:1081245/1‑148 (MQ=255)
aGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATg > 1:1210169/1‑148 (MQ=255)
tCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTa > 1:2368884/1‑148 (MQ=255)
catcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTc > 1:1955550/1‑148 (MQ=255)
atcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCa > 1:3171367/1‑148 (MQ=255)
atcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCa < 1:2916452/148‑1 (MQ=255)
tcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCAc > 1:3457032/1‑148 (MQ=255)
caACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACg > 2:2233329/1‑148 (MQ=255)
caACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACg < 2:2427251/148‑1 (MQ=255)
cATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTg > 2:717708/1‑148 (MQ=255)
cACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGc > 1:3185853/1‑148 (MQ=255)
cACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGc < 1:1162707/148‑1 (MQ=255)
tttCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTgg > 1:3795067/1‑148 (MQ=255)
tttCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTgg > 2:3786216/1‑148 (MQ=255)
ttCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTggg > 1:2714070/1‑148 (MQ=255)
tCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGt < 2:405598/148‑1 (MQ=255)
tCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGt < 2:1692197/148‑1 (MQ=255)
gATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAAt > 1:548693/1‑148 (MQ=255)
tGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAAttt < 1:2639515/148‑1 (MQ=255)
tGCCGAGTTTTACCAGGCCGATAACCATGATGCGCACAACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACACTGTCGTAGATTGCACGCTGGGCCTGGGTGAAttt > 2:3291920/1‑148 (MQ=255)
gCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTg < 2:3318716/148‑1 (MQ=255)
gCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTg < 2:2092775/148‑1 (MQ=255)
ccGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGc > 1:1797452/1‑148 (MQ=255)
ccGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGc < 1:458004/148‑1 (MQ=255)
gAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCg < 1:612367/148‑1 (MQ=255)
gAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCg < 1:255839/148‑1 (MQ=255)
aGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGTTACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGTGTGAATTTGcctt < 2:1539627/148‑3 (MQ=255)
gTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGtt > 2:2668207/1‑148 (MQ=255)
gTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGtt > 2:3440809/1‑148 (MQ=255)
ttttACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTg < 1:2146734/148‑1 (MQ=255)
ttACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGAc < 1:2096851/148‑1 (MQ=255)
ttACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGAc < 2:2493032/148‑1 (MQ=255)
gCCGCTAACCCTGATGCGCACCCCGTCCCCAGTGACTTCCAGAAGGGAAGGTCCCGGACGAGACAGGCGCACGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAg < 2:1793498/148‑1 (MQ=255)
gCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAg < 2:3351846/148‑1 (MQ=255)
tAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCg < 2:3216556/148‑1 (MQ=255)
ccATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTTCCGTTGACCGGGAAGGTGCGGGt > 1:3514153/1‑148 (MQ=255)
ccATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGt < 1:255630/148‑1 (MQ=255)
ccATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGt < 1:3478319/148‑1 (MQ=255)
cATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTa > 1:1289637/1‑148 (MQ=255)
cATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTa < 2:3505094/148‑1 (MQ=255)
cATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTa < 2:1284307/148‑1 (MQ=255)
atgatgCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTaa > 2:1611285/1‑148 (MQ=255)
atgatgCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTaa > 1:1254814/1‑148 (MQ=255)
atgCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAatat > 1:1061427/1‑148 (MQ=255)
atgCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAatat < 1:851447/148‑1 (MQ=255)
cgcACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGc < 2:455536/148‑1 (MQ=255)
cgcACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGc < 1:3741035/148‑1 (MQ=255)
cgcACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTACTATCGc > 2:540917/1‑148 (MQ=255)
accacTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAg > 1:419335/1‑148 (MQ=255)
cacTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCg > 1:2482482/1‑148 (MQ=255)
acTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGt > 1:1496941/1‑148 (MQ=255)
cTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTa < 2:3626936/148‑1 (MQ=255)
cTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTa > 1:1400542/1‑148 (MQ=255)
cTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTa > 1:137821/1‑148 (MQ=255)
cTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTa < 2:1400271/148‑1 (MQ=255)
cACCAGTGACTTCCAGACTGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAAcc < 1:501391/148‑1 (MQ=255)
aCCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCt < 1:238306/148‑1 (MQ=255)
aCCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCt > 1:274681/1‑148 (MQ=255)
aCCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCt > 1:1095283/1‑148 (MQ=255)
aCCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCt < 2:330814/148‑1 (MQ=255)
cAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCttt < 1:1482970/148‑1 (MQ=255)
aGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTg > 2:2098195/1‑148 (MQ=255)
gTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGt < 2:3037846/148‑1 (MQ=255)
tGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTa < 1:3370760/148‑1 (MQ=255)
tGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTa > 1:3120435/1‑148 (MQ=255)
gACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTAt > 1:2640800/1‑148 (MQ=255)
gACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTAt > 1:3268771/1‑148 (MQ=255)
ctaccAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTc < 1:363592/145‑1 (MQ=255)
aGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAAc > 2:3472653/1‑148 (MQ=255)
ggAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCcgcg < 2:1329338/148‑1 (MQ=255)
ggAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCcgcg < 2:3489857/148‑1 (MQ=255)
gAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGt < 1:813796/148‑1 (MQ=255)
aGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGtca > 1:300442/1‑148 (MQ=255)
cccGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGtcaatca < 2:3725481/148‑1 (MQ=255)
aCGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACAcc < 1:297977/148‑1 (MQ=255)
aTACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAAGGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAgg < 2:1297283/148‑1 (MQ=255)
aCAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTc > 1:706186/1‑148 (MQ=255)
aCAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTc > 1:706272/1‑148 (MQ=255)
aGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGc < 2:3331360/148‑1 (MQ=255)
ggCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGcc > 2:271351/1‑148 (MQ=255)
gCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCgcgc > 2:3661115/1‑148 (MQ=255)
tGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCGCGCAt < 2:2735175/148‑1 (MQ=255)
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AAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCGCGCATT > CP009273/3047154‑3047447
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
