Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F361 I0 R1
|
1353 |
250.7 |
8230166 |
96.0% |
7900959 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,047,301 |
G→T |
33.1% |
T300N (ACC→AAC) |
pepP ← |
proline aminopeptidase P II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,047,301 | 0 | G | T | 33.1%
| 414.5
/ 203.3
| 245 | T300N (ACC→AAC) | pepP | proline aminopeptidase P II |
| Reads supporting (aligned to +/- strand): ref base G (77/87); new base T (43/38); total (120/125) |
| Fisher's exact test for biased strand distribution p-value = 4.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
Only 100 of 247 total aligned reads displayed.
AAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCGCGCATTTC > CP009273/3047154‑3047449
|
aagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGt < 1:3969491/149‑1 (MQ=255)
aaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTc > 1:2450832/1‑149 (MQ=255)
aaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTc < 2:1528439/149‑1 (MQ=255)
aaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTc < 2:1132073/149‑1 (MQ=255)
ggACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCgag > 2:1221899/1‑149 (MQ=255)
gACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCgaga < 2:603090/149‑1 (MQ=255)
gATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGAc < 1:1776882/149‑1 (MQ=255)
gATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGAc < 2:209700/149‑1 (MQ=255)
gggCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTcc < 2:3751161/149‑1 (MQ=255)
gggCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTcc > 2:2109709/1‑149 (MQ=255)
gTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGca < 2:3371418/149‑1 (MQ=255)
ttCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGcac > 1:1700174/1‑149 (MQ=255)
cTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACaa < 2:3674715/149‑1 (MQ=255)
gAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATg < 1:919584/149‑1 (MQ=255)
gAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATg > 1:2038968/1‑149 (MQ=255)
gAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATg > 1:282723/1‑149 (MQ=255)
gAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATg > 2:2918605/1‑149 (MQ=255)
gCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTc > 2:2728402/1‑149 (MQ=255)
gCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTc > 1:2593727/1‑149 (MQ=255)
gATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGt < 2:926086/149‑1 (MQ=255)
aTCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTa < 1:736656/149‑1 (MQ=255)
aTCAGTTCATCAACATCACCTTTCAGGATGCCAAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTa < 1:1510076/149‑1 (MQ=255)
aGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGAt < 1:2325995/149‑1 (MQ=255)
ttCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGAttt > 2:882326/1‑149 (MQ=255)
tcatcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACAATGATGCGCACAACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTc > 1:1835602/1‑149 (MQ=255)
atcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCAc > 1:3552013/1‑149 (MQ=255)
tcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGACTGGAAGTTCCCGGACGAGACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACg > 2:2555958/1‑149 (MQ=255)
tcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACg > 2:2996776/1‑149 (MQ=255)
caACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGc < 1:1654580/149‑1 (MQ=255)
aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTggg > 1:3251894/1‑149 (MQ=255)
tCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCTCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGc > 1:279076/1‑149 (MQ=255)
aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCt > 2:1630450/1‑149 (MQ=255)
aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCt < 2:1778803/149‑1 (MQ=255)
ttCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGt < 1:409613/149‑1 (MQ=255)
aGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGaa < 1:2189996/149‑1 (MQ=255)
gATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAAtt < 1:4016174/149‑1 (MQ=255)
aTGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAAttt < 2:82907/149‑1 (MQ=255)
gCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTgt < 2:829719/149‑2 (MQ=255)
aGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGtt < 2:1962677/149‑1 (MQ=255)
aGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGtt < 1:1093063/149‑1 (MQ=255)
ttttACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGa < 1:2873063/149‑1 (MQ=255)
ttttACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGa < 1:511548/149‑1 (MQ=255)
ttACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGAcc > 1:1194800/1‑149 (MQ=255)
ggCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAg > 2:2483670/1‑149 (MQ=255)
ggCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAg < 1:701931/149‑1 (MQ=255)
ggCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAg < 1:830974/149‑1 (MQ=255)
ggCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAg < 1:1227478/149‑1 (MQ=255)
ccGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGt < 1:2820037/149‑1 (MQ=255)
ccGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGt < 1:2820156/149‑1 (MQ=255)
ccGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGt < 1:1444411/149‑1 (MQ=255)
cGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTg > 1:4074726/1‑149 (MQ=255)
gCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGc < 2:3552013/149‑1 (MQ=255)
gCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGc > 2:780650/1‑149 (MQ=255)
gCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGGGAATTTGCCGTTGACCGGGAAGGTGc > 2:3072473/1‑149 (MQ=255)
gCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGc > 2:1927109/1‑149 (MQ=255)
gCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGc > 2:1927062/1‑149 (MQ=255)
aaCCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCggg < 1:16028/149‑1 (MQ=255)
aaCCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCggg < 1:3437411/149‑1 (MQ=255)
aaCCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCggg > 1:1342298/1‑149 (MQ=255)
cATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTaa > 2:3359385/1‑149 (MQ=255)
ctgatgCGCACCACGTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGAGTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAat < 2:2064927/148‑1 (MQ=255)
tgatgCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAata > 1:2653607/1‑149 (MQ=255)
gatgCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAatat < 2:3398669/149‑1 (MQ=255)
gatgCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAatat < 2:3438090/149‑1 (MQ=255)
caccacTTCACCAGTGACGTCCAGAATGGAAGGTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAg < 2:2304458/149‑1 (MQ=255)
cTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTaa > 2:764219/1‑149 (MQ=255)
cTTCACCAGTGACTTCCACAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTaa < 2:2825269/149‑1 (MQ=255)
cACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCt < 2:4000588/149‑1 (MQ=255)
cACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCt > 1:3705676/1‑149 (MQ=255)
ccAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCttt < 2:2576735/149‑1 (MQ=255)
aGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGt > 2:3161613/1‑149 (MQ=255)
aGTGACGTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGt < 2:2849404/149‑1 (MQ=255)
gTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTa > 1:2912819/1‑149 (MQ=255)
gACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTAtt < 1:924618/149‑1 (MQ=255)
aCTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTc < 1:3359369/149‑1 (MQ=255)
aCTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTc > 1:3510824/1‑149 (MQ=255)
cTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTca > 1:2307092/1‑149 (MQ=255)
aaTGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCcg < 1:385475/149‑1 (MQ=255)
tGGAAGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCcgcg > 1:1014732/1‑149 (MQ=255)
aGTTCCCGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGtcaa < 2:125590/149‑1 (MQ=255)
aGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTGGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGtcaa > 1:2120148/1‑149 (MQ=255)
aGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGtcaa > 2:3141974/1‑149 (MQ=255)
ttCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGtcaatc < 1:1886452/149‑1 (MQ=255)
ccGGACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAac > 2:2775023/1‑149 (MQ=255)
ccGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGACTTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAac > 2:2664269/1‑149 (MQ=255)
ggACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAacac < 1:648043/149‑1 (MQ=255)
ggACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAacac > 2:3817444/1‑149 (MQ=255)
gACGATACAGGCGCAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACAcc > 1:1124462/1‑149 (MQ=255)
gACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACAcc > 2:416750/1‑149 (MQ=255)
gACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACAcc > 2:1406785/1‑149 (MQ=255)
aTACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACAGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGt < 2:488875/149‑1 (MQ=255)
tACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTc > 2:4078599/1‑149 (MQ=255)
cAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGc < 1:3117804/149‑1 (MQ=255)
ggCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCg > 1:838965/1‑149 (MQ=255)
cgcAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTc < 1:2213567/149‑1 (MQ=255)
gcAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGACGTTGACCGGGAAGGTGCGGGTAATATAGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTcg > 2:1715811/1‑149 (MQ=255)
cAGGCTGTTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTcgc < 2:1866869/149‑1 (MQ=255)
ggCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCTTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCtcgc > 1:2360596/1‑149 (MQ=255)
cTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCGCGCAt < 1:3601038/149‑1 (MQ=255)
gTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCGCGCATTTc < 2:3115999/149‑1 (MQ=255)
|
AAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTCCCGGACGATACAGGCGCAGGCTGGTTTCGAGAGACTCCAGCACAATGTCGTAGATTTCACGCTGGGCCTGGGTGAATTTGCCGTTGACCGGGAAGGTGCGGGTAATATCGCCAGCGTAACCTTTGTATTCACAACCCGCGTCAATCAACACCAGGTCGCCGTCGCGCATTTC > CP009273/3047154‑3047449
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
