Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F342 I0 R1 1331 225.9 7641038 95.8% 7320114 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,262,740 T→A 21.7% Y323N (TAT→AAT)  yhaC → pentapetide repeats‑related protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,262,7400TA21.7% 837.4 / 229.0 376Y323N (TAT→AAT) yhaCpentapetide repeats‑related protein
Reads supporting (aligned to +/- strand):  ref base T (176/118);  new base A (44/38);  total (220/156)
Fisher's exact test for biased strand distribution p-value = 3.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 387 total aligned reads displayed.

ACAAAAGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATAACACATATGAAG  >  CP009273/3262593‑3262887
                                                                                                                                                   |                                                                                                                                                   
aCAAAAGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCtt                                                                                                                                                     <  2:3390405/148‑1 (MQ=255)
aCAAAAGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCtt                                                                                                                                                     >  2:1088794/1‑148 (MQ=255)
 cAAAAGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTa                                                                                                                                                    >  2:3476415/1‑148 (MQ=255)
 cAAAAGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTa                                                                                                                                                    >  1:44763/1‑148 (MQ=255)
 cAAAAGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAAGTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTa                                                                                                                                                    >  2:2124420/1‑148 (MQ=255)
  aaaaGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTAt                                                                                                                                                   <  2:3691389/148‑1 (MQ=255)
    aataaaTATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCt                                                                                                                                                 >  2:609713/4‑148 (MQ=255)
    aaGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCt                                                                                                                                                 >  1:1173678/1‑148 (MQ=255)
    aaGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATAAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCt                                                                                                                                                 >  2:3715545/1‑148 (MQ=255)
      gAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTgg                                                                                                                                               <  2:912655/148‑1 (MQ=255)
       aaaTATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGgt                                                                                                                                              >  2:139887/1‑148 (MQ=255)
         atatatAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGgtcg                                                                                                                                            >  2:2528626/1‑148 (MQ=255)
         atatatAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGgtcg                                                                                                                                            >  1:681159/1‑148 (MQ=255)
              taAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTcccc                                                                                                                                       >  1:364574/1‑148 (MQ=255)
              taAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTcccc                                                                                                                                       >  2:876277/1‑148 (MQ=255)
               aaaaGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTccccc                                                                                                                                      >  2:3270498/1‑148 (MQ=255)
                  aGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCaaa                                                                                                                                   >  1:1658504/1‑148 (MQ=255)
                       aTCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAaattaat                                                                                                                              <  2:1399964/148‑1 (MQ=255)
                        tCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAaattaatt                                                                                                                             >  1:3741928/1‑148 (MQ=255)
                        tCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAaattaatt                                                                                                                             <  1:3576696/148‑1 (MQ=255)
                        tCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAaattaatt                                                                                                                             >  1:546215/1‑148 (MQ=255)
                         cGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAattaatta                                                                                                                            >  1:561085/1‑148 (MQ=255)
                         cGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAattaatta                                                                                                                            >  1:909533/1‑148 (MQ=255)
                            aaaTCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATAc                                                                                                                         >  2:3384029/1‑148 (MQ=255)
                            aaaTCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATAc                                                                                                                         >  2:1706431/1‑148 (MQ=255)
                             aaTCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACt                                                                                                                        <  2:697681/148‑1 (MQ=255)
                                   caATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAAAATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCACAAATTAATTATACTATGCAt                                                                                                                  >  1:3039826/1‑148 (MQ=255)
                                     aTTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGAttt                                                                                                                >  2:1285111/1‑148 (MQ=255)
                                     aTTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGAttt                                                                                                                >  1:2974621/1‑148 (MQ=255)
                                      ttGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTa                                                                                                               >  2:17629/1‑148 (MQ=255)
                                        gCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTaaa                                                                                                             <  2:183688/148‑1 (MQ=255)
                                          ttGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACa                                                                                                           <  1:1340101/148‑1 (MQ=255)
                                           tGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACAt                                                                                                          >  1:152321/1‑148 (MQ=255)
                                              aCAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATaga                                                                                                       <  1:1038894/148‑1 (MQ=255)
                                              aCAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATaga                                                                                                       <  1:1752925/148‑1 (MQ=255)
                                              aCAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATaga                                                                                                       <  1:2345109/148‑1 (MQ=255)
                                                 gAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATagaaga                                                                                                    <  2:1828829/148‑1 (MQ=255)
                                                 gAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATagaaga                                                                                                    <  2:481262/148‑1 (MQ=255)
                                                   attaaattaaCAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGAct                                                                                                  >  2:2667242/1‑148 (MQ=255)
                                                   attaaattaaCAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGAct                                                                                                  >  1:354986/1‑148 (MQ=255)
                                                    ttaaattaaCAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGActc                                                                                                 >  1:289812/1‑148 (MQ=255)
                                                     taaattaaCAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGActct                                                                                                >  1:587651/1‑148 (MQ=255)
                                                             cAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCaga                                                                                        >  1:2247477/1‑148 (MQ=255)
                                                                agaTGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCagaaga                                                                                     >  2:3813281/1‑148 (MQ=255)
                                                                  aTGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGt                                                                                   >  1:1478327/1‑148 (MQ=255)
                                                                  aTGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGt                                                                                   <  1:868884/148‑1 (MQ=255)
                                                                      aataaTTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACt                                                                               <  2:1655768/145‑1 (MQ=255)
                                                                       aGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACtt                                                                              >  1:3225614/1‑148 (MQ=255)
                                                                         aaTTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTc                                                                            >  2:2968348/1‑148 (MQ=255)
                                                                         aaTTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTc                                                                            >  1:2160543/1‑148 (MQ=255)
                                                                           ttCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAg                                                                          >  2:1452603/1‑148 (MQ=255)
                                                                           ttCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAACAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAg                                                                          <  1:2678031/148‑1 (MQ=255)
                                                                            tctcATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGGTTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGa                                                                         >  2:3574285/1‑148 (MQ=255)
                                                                             ctcATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATAAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGat                                                                        <  1:2790426/148‑1 (MQ=255)
                                                                                atcaGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGataat                                                                     >  2:2730389/1‑148 (MQ=255)
                                                                                 tcaTAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGataata                                                                    <  2:2940476/148‑1 (MQ=255)
                                                                                     aaaaaaTATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCt                                                                <  2:804294/148‑1 (MQ=255)
                                                                                     aaaaaaTATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCt                                                                >  2:3090985/1‑148 (MQ=255)
                                                                                       aaaaTATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCg                                                              >  2:1975123/1‑148 (MQ=255)
                                                                                           tatatGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGaa                                                          >  2:3629571/1‑148 (MQ=255)
                                                                                             tatGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAg                                                        <  1:2025911/148‑1 (MQ=255)
                                                                                              atGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGa                                                       <  1:1832728/148‑1 (MQ=255)
                                                                                               tGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGAc                                                      >  2:1016025/1‑148 (MQ=255)
                                                                                                 aTTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGa                                                    >  1:489556/1‑148 (MQ=255)
                                                                                                   tACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGaaa                                                  <  1:2554425/148‑1 (MQ=255)
                                                                                                   tACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGaaa                                                  >  2:2586253/1‑148 (MQ=255)
                                                                                                     cATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAAt                                                >  1:772103/1‑148 (MQ=255)
                                                                                                     cATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAAt                                                >  1:3811935/1‑148 (MQ=255)
                                                                                                        cGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATtct                                             <  2:152321/148‑1 (MQ=255)
                                                                                                        cGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATtct                                             >  1:3270885/1‑148 (MQ=255)
                                                                                                        cGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATtct                                             >  2:3394534/1‑148 (MQ=255)
                                                                                                         gATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATtctc                                            <  1:1888131/148‑1 (MQ=255)
                                                                                                          atatAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTcc                                           >  1:2425671/1‑148 (MQ=255)
                                                                                                           tataATCATTGAAGATTATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCg                                          >  1:2575359/1‑148 (MQ=255)
                                                                                                            ataATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCgg                                         >  2:464721/1‑148 (MQ=255)
                                                                                                              aaTCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGAc                                       >  2:278130/1‑148 (MQ=255)
                                                                                                              aaTCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGAc                                       >  1:973538/1‑148 (MQ=255)
                                                                                                              aaTCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGAc                                       >  2:2397364/1‑148 (MQ=255)
                                                                                                               aTCATTGAAGATTTTGAAAATACCAAACAAACTGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGTATTTTAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAACGACGAAAATTCTCCGGAcc                                      <  2:2318596/148‑2 (MQ=255)
                                                                                                               aTCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACa                                      <  1:2748566/148‑1 (MQ=255)
                                                                                                               aTCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACa                                      >  2:2015220/1‑148 (MQ=255)
                                                                                                                   ttGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATgg                                  >  2:562030/1‑148 (MQ=255)
                                                                                                                    tGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGc                                 <  1:2948642/148‑1 (MQ=255)
                                                                                                                     gAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCt                                <  1:1285111/148‑1 (MQ=255)
                                                                                                                          ttATGAAAATACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAg                           >  1:210805/1‑148 (MQ=255)
                                                                                                                           tgtGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAATAGTTACTTTCAGATAATAAACTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAgg                          >  2:2097226/3‑148 (MQ=255)
                                                                                                                                  aTACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTAGGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGa                   <  1:3067067/148‑1 (MQ=255)
                                                                                                                                  aTACCAAAGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGa                   <  2:1187167/148‑1 (MQ=255)
                                                                                                                                     ccAAAGAAAATGCTTATCTGGTCGTCCCCAAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAata                <  1:1686793/148‑1 (MQ=255)
                                                                                                                                      cAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAatat               >  2:1579386/1‑148 (MQ=255)
                                                                                                                                       aaaGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAAtata              <  2:3319445/148‑1 (MQ=255)
                                                                                                                                       aaaGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAAtata              <  1:3715545/148‑1 (MQ=255)
                                                                                                                                       aaaGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAAtata              >  1:3422623/1‑148 (MQ=255)
                                                                                                                                        aaGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGACTATaa             >  2:2457040/1‑148 (MQ=255)
                                                                                                                                        aaGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATaa             >  1:1082337/1‑148 (MQ=255)
                                                                                                                                         aGAAAATGCTAATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATAac            >  2:3175908/1‑148 (MQ=255)
                                                                                                                                             aaTGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATAACACat        <  1:139887/148‑1 (MQ=255)
                                                                                                                                             aaTGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATAACACat        >  2:423603/1‑148 (MQ=255)
                                                                                                                                               tGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATAACACatat      >  1:3154005/1‑148 (MQ=255)
                                                                                                                                                   tATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATAACACATATGAAg  >  2:2269070/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
ACAAAAGAAATATATAAAAGCTCATCGAAAATCATCAATTGCTTGAACAGAATTAAATTAACAGAGATGAAAGAATTCTCATCAGAAAAAATATATGATTACATCGATATAATCATTGAAGATTATGAAAATACCAAAGAAAATGCTTATCTGGTCGTCCCCCAAATTAATTATACTATGGATTTAAACATAGAAGACTCTAGCTCAGAAGAGTTACTTTCAGATAATACCCTCGAGAAAGACGAAAATTCTCCGGACAATGGCTTTGAGGTCGGGGAATATAACACATATGAAG  >  CP009273/3262593‑3262887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A