Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F204 I0 R1	1155	255.8	8356456	95.7%	7997128	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	2,415,498	G→T	37.4%	T104T (ACG→ACT)	yfcH →	putative NAD‑dependent nucleotide‑sugar epimerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	2,415,498	0	G	T	37.4%	376.9 / 264.8	261	T104T (ACG→ACT)	yfcH	putative NAD‑dependent nucleotide‑sugar epimerase
Reads supporting (aligned to +/- strand): ref base G (95/68); new base T (57/40); total (153/108)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 266 total aligned reads displayed.

AGCAACCTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCGGGCGCAAAGTGA  >  CP009273/2415349‑2415647

aGCAACCTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACg                                                                                                                                                       <  1:4111955/150‑1 (MQ=255)

   aaCCTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCa                                                                                                                                                    >  2:1586216/1‑150 (MQ=255)

   aaCCTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCa                                                                                                                                                    >  2:2190391/1‑150 (MQ=255)

     ccTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCAcc                                                                                                                                                  <  1:1249445/150‑1 (MQ=255)

     ccTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCAcc                                                                                                                                                  >  1:607713/1‑150 (MQ=255)

      cTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCg                                                                                                                                                 <  1:2534030/150‑1 (MQ=255)

       tCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGt                                                                                                                                                >  2:1456044/1‑150 (MQ=255)

        cAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTc                                                                                                                                               <  2:602372/150‑1 (MQ=255)

        cAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTc                                                                                                                                               >  1:848525/1‑150 (MQ=255)

         aaCGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCg                                                                                                                                              <  2:1016324/150‑1 (MQ=255)

         aaCGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCg                                                                                                                                              >  1:3428689/1‑150 (MQ=255)

         aaCGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCg                                                                                                                                              <  2:2786991/150‑1 (MQ=255)

            ggCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTa                                                                                                                                           >  1:4026369/1‑150 (MQ=255)

            ggCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTa                                                                                                                                           >  2:3869541/1‑150 (MQ=255)

            ggCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTa                                                                                                                                           >  1:2414938/1‑150 (MQ=255)

            ggCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTa                                                                                                                                           >  1:3368558/1‑150 (MQ=255)

               gTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAATCTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTc                                                                                                                                        >  1:1003115/1‑150 (MQ=255)

               gTTGATGCGGTAATCAACCTGGCCGGAGAACCGATAGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTc                                                                                                                                        >  1:1099535/1‑150 (MQ=255)

                   aTGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCAttt                                                                                                                                    <  1:2722482/150‑1 (MQ=255)

                    tGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTc                                                                                                                                   <  1:68218/150‑1 (MQ=255)

                      cGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCg                                                                                                                                 >  2:3642142/1‑150 (MQ=255)

                      cGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCg                                                                                                                                 >  1:725309/1‑150 (MQ=255)

                          aaTCAACGTGGCCGGAGAACCGATTGCTGATACACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGTATATCACGCAAAAACTGGTCGATTTGATTAATGACAGCGACACTCCACCGTCGGTTCTCATTTCCGGCTc                                                                                                                             <  2:2451031/150‑1 (MQ=255)

                           aTCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCg                                                                                                                            >  1:254974/1‑150 (MQ=255)

                           aTCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCg                                                                                                                            >  1:3876466/1‑150 (MQ=255)

                            tCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCgg                                                                                                                           >  2:4126369/1‑150 (MQ=255)

                              aaCCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCa                                                                                                                         >  1:862435/1‑150 (MQ=255)

                                ccTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAAc                                                                                                                       >  1:2636257/1‑150 (MQ=255)

                                ccTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAAc                                                                                                                       <  1:652097/150‑1 (MQ=255)

                                 cTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACg                                                                                                                      >  1:3840535/1‑150 (MQ=255)

                                 cTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACg                                                                                                                      >  2:49409/1‑150 (MQ=255)

                                  tGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACgg                                                                                                                     <  2:2542648/150‑1 (MQ=255)

                                  tGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACgg                                                                                                                     >  2:4105098/1‑150 (MQ=255)

                                        gagaACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCtatt                                                                                                               >  2:1521753/1‑150 (MQ=255)

                                        gagaACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCtatt                                                                                                               <  1:1630090/150‑1 (MQ=255)

                                           aaCCGAGTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATg                                                                                                            <  2:3203245/150‑1 (MQ=255)

                                             ccGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGt                                                                                                          >  1:3714683/1‑150 (MQ=255)

                                              cGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTg                                                                                                         >  2:822614/1‑150 (MQ=255)

                                                 ttGCTGATACACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCCCCGTCGGTTCTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACt                                                                                                      <  2:599318/150‑1 (MQ=255)

                                                  tGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACtt                                                                                                     <  2:3999519/150‑1 (MQ=255)

                                                    cTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAg                                                                                                   <  1:1310288/150‑1 (MQ=255)

                                                    cTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCAAGCGACACTCCACCGTCGGTACAAATTTACGGCTCGGCAACGGGCGAGTAAGGTGAATTAg                                                                                                   >  1:3196890/1‑150 (MQ=255)

                                                         aaaCGCTGGACTCACGAGCAACAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGaa                                                                                              <  2:849354/150‑1 (MQ=255)

                                                         aaaCGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATATCCGGCTCGGCAACGGGCTATTATGGTGACATAGGTGaa                                                                                              >  1:3290842/1‑150 (MQ=255)

                                                         aaaCGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGaa                                                                                              >  2:1231826/1‑150 (MQ=255)

                                                          anCGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTTATTAATGCCAGAGTCACGCCACCGTCGGTACTCATTTCCGGCTCGGCAAAGGGCTATTATGGTGACTTAGGTTAAg                                                                                             >  2:706787/1‑150 (MQ=255)

                                                              cTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAgtggt                                                                                         <  1:2224857/150‑1 (MQ=255)

                                                               tGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAgtggtg                                                                                        <  1:1148513/150‑1 (MQ=255)

                                                               tGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAgtggtg                                                                                        >  1:3543128/1‑150 (MQ=255)

                                                                 gACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTggtggt                                                                                      <  1:2882646/150‑1 (MQ=255)

                                                                   cTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTa                                                                                    <  2:2774573/150‑1 (MQ=255)

                                                                   cTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTa                                                                                    <  2:4057007/150‑1 (MQ=255)

                                                                         aGCAAACAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAag                                                                              <  2:553488/150‑1 (MQ=255)

                                                                           cAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAagag                                                                            >  2:3421384/1‑150 (MQ=255)

                                                                           cAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAagag                                                                            <  1:1616014/150‑1 (MQ=255)

                                                                              aaaGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGATACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGaa                                                                         <  1:1687081/150‑1 (MQ=255)

                                                                                 gagCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAAccg                                                                      >  1:827044/1‑150 (MQ=255)

                                                                                  agCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAAccgc                                                                     >  1:3910954/1‑150 (MQ=255)

                                                                                   gCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAAccgcc                                                                    >  1:3284976/1‑150 (MQ=255)

                                                                                     gTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACcgccgc                                                                  >  1:207751/1‑150 (MQ=255)

                                                                                     gTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTACGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACcgccgc                                                                  >  1:657168/1‑150 (MQ=255)

                                                                                       ctctGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCAt                                                                >  2:3139772/1‑150 (MQ=255)

                                                                                        tctGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATa                                                               >  2:3922452/1‑150 (MQ=255)

                                                                                             cAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGaa                                                          <  1:3431052/150‑1 (MQ=255)

                                                                                              aaaGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAAt                                                         <  2:142901/150‑1 (MQ=255)

                                                                                              aaaGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAAt                                                         >  2:3063862/1‑150 (MQ=255)

                                                                                              aaaGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAAt                                                         >  2:1373557/1‑150 (MQ=255)

                                                                                              aaaGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAAt                                                         >  2:3945111/1‑150 (MQ=255)

                                                                                               aaGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAAtt                                                        >  2:3749704/1‑150 (MQ=255)

                                                                                                aGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAAttt                                                       <  1:2765156/150‑1 (MQ=255)

                                                                                                  ccGCTGGAATATCACGCAAAATCTGGTCGATTTGATTATTGCCAGCGACTCGCCACCGTCGGTAATCATTTCCGGCTCGGCATCGGGATATTATGGTGACTTTGGTGAAGTGGTGGTTACCGAATAGGAACCGCCGCATAACGAATTTAc                                                     <  1:1421868/150‑1 (MQ=255)

                                                                                                  ccGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTAc                                                     <  2:129468/150‑1 (MQ=255)

                                                                                                    gCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACGTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTAccc                                                   >  2:1400755/1‑150 (MQ=255)

                                                                                                         aaTATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATaaa                                              >  2:2368247/1‑150 (MQ=255)

                                                                                                          atatCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAAc                                             >  1:74634/1‑150 (MQ=255)

                                                                                                          atatCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAAc                                             <  2:235223/150‑1 (MQ=255)

                                                                                                           tatCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAAct                                            <  1:2806789/150‑1 (MQ=255)

                                                                                                              cACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTg                                         >  2:3263436/1‑150 (MQ=255)

                                                                                                               aCGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTgc                                        >  2:2918795/1‑150 (MQ=255)

                                                                                                               aCGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTgc                                        >  2:3194509/1‑150 (MQ=255)

                                                                                                                  cAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGcgct                                     >  1:3004830/1‑150 (MQ=255)

                                                                                                                  cAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGcgct                                     >  2:1673263/1‑150 (MQ=255)

                                                                                                                    aaaaCTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCGCGGAAACGGGATATTATGGTTACTTAGGTTAAGTGGTGGTTACCGAATAGGAACCCCCGCAAAACGAATTTAACCATAAACTATgagcaca                                   >  1:3677493/1‑147 (MQ=255)

                                                                                                                     aaaCTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGcgctcgc                                  >  2:4022148/1‑150 (MQ=255)

                                                                                                                      aaCTGGTCGATTTGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGcgctcgct                                 <  1:1324585/150‑1 (MQ=255)

                                                                                                                      aaCTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGcgctcgct                                 <  1:4083436/150‑1 (MQ=255)

                                                                                                                          ggTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTACGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGga                             >  1:3994287/1‑150 (MQ=255)

                                                                                                                           gTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGgaa                            >  1:2440822/1‑150 (MQ=255)

                                                                                                                              gATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGgaagaa                         <  1:970152/150‑1 (MQ=255)

                                                                                                                                tttGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAAt                       >  1:1172414/1‑150 (MQ=255)

                                                                                                                                 ttGATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAAtt                      >  1:4170821/1‑150 (MQ=255)

                                                                                                                                   gATTAATGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATtgc                    <  2:2054889/150‑1 (MQ=255)

                                                                                                                                    aTTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATtgcc                   >  2:481831/1‑150 (MQ=255)

                                                                                                                                     ttAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATtgcct                  <  2:2240990/150‑1 (MQ=255)

                                                                                                                                         tGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCg              >  2:3363934/1‑150 (MQ=255)

                                                                                                                                         tGCCAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCg              <  2:761032/150‑1 (MQ=255)

                                                                                                                                         tGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCg              <  1:364575/150‑1 (MQ=255)

                                                                                                                                            cAGCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCGGgc           <  1:1962663/150‑1 (MQ=255)

                                                                                                                                              gCGACACTCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTCACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCGGgcgc         >  1:2151315/1‑150 (MQ=255)

                                                                                                                                                    cGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCGGGCGCAAAGTg   <  2:1087972/150‑1 (MQ=255)

AGCAACCTCAACGGCGTTGATGCGGTAATCAACCTGGCCGGAGAACCGATTGCTGATAAACGCTGGACTCACGAGCAAAAAGAGCGTCTCTGCCAAAGCCGCTGGAATATCACGCAAAAACTGGTCGATTTGATTAATGCCAGCGACACGCCACCGTCGGTACTCATTTCCGGCTCGGCAACGGGCTATTATGGTGACTTAGGTGAAGTGGTGGTTACCGAAGAGGAACCGCCGCATAACGAATTTACCCATAAACTCTGCGCTCGCTGGGAAGAAATTGCCTGCCGGGCGCAAAGTGA  >  CP009273/2415349‑2415647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A