Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F204 I0 R1
|
1155 |
255.8 |
8356456 |
95.7% |
7997128 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,046,473 |
G→T |
30.7% |
N135K (AAC→AAA) |
ubiH ← |
2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,046,473 | 0 | G | T | 30.7%
| 524.6
/ 221.8
| 264 | N135K (AAC→AAA) | ubiH | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| Reads supporting (aligned to +/- strand): ref base G (81/102); new base T (39/42); total (120/144) |
| Fisher's exact test for biased strand distribution p-value = 5.93e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
Only 100 of 266 total aligned reads displayed.
GCCAGTTGTTCGTAAGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAATCCAGCGTG > CP009273/3046324‑3046622
|
cAGTTGTTCGTAAGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGtt < 1:3120485/150‑1 (MQ=255)
ttgttCGTAAGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGc < 2:3352968/150‑1 (MQ=255)
ttgttCGTAAGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGc < 1:2513307/150‑1 (MQ=255)
gttCGTAAGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCa < 2:151419/150‑1 (MQ=255)
tacggCTCCAGCTGCCAGTCACCGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCCGCGTCACTCCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGa < 1:2217621/147‑1 (MQ=255)
tAAGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGa > 1:3811441/1‑150 (MQ=255)
aaGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGAt > 1:2433759/1‑150 (MQ=255)
aaGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGAt > 1:831858/1‑150 (MQ=255)
aaGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGAt > 2:2768978/1‑150 (MQ=255)
ctgctgCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCa > 1:247056/1‑150 (MQ=255)
ctgctgCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCa > 1:3117280/1‑150 (MQ=255)
tgctgaCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCaa < 2:577646/150‑1 (MQ=255)
gctgcCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAAt > 2:1663918/1‑150 (MQ=255)
cAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTa > 1:1588480/1‑150 (MQ=255)
cAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTa > 1:2712723/1‑150 (MQ=255)
cAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTa < 1:3599948/150‑1 (MQ=255)
aaCGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTAc > 2:1050921/1‑150 (MQ=255)
aaCGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTAc > 1:3778124/1‑150 (MQ=255)
cgccgcACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGc > 1:1015675/1‑150 (MQ=255)
cgccgcACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCGGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGc > 1:1663728/1‑150 (MQ=255)
cgcACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAg < 1:808042/150‑1 (MQ=255)
cgGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCtt > 2:3197065/1‑150 (MQ=255)
cgGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCtt < 1:1816888/150‑1 (MQ=255)
cgGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCtt > 2:4145867/1‑150 (MQ=255)
gTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCACCGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTa < 2:2649817/150‑1 (MQ=255)
gTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTa < 2:1606237/150‑1 (MQ=255)
gTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTa < 2:3734028/150‑1 (MQ=255)
tGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTAc < 2:2704521/150‑1 (MQ=255)
tAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACgcag > 1:1325467/1‑150 (MQ=255)
tAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACgcag < 2:2052677/150‑1 (MQ=255)
tAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACgcag > 2:2428035/1‑150 (MQ=255)
tAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACgcag > 2:903887/1‑150 (MQ=255)
cGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCaa > 1:1543181/1‑150 (MQ=255)
cGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCaa > 1:488781/1‑150 (MQ=255)
cTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATg < 2:936963/150‑1 (MQ=255)
tGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGc < 1:1296649/150‑1 (MQ=255)
tGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGc > 1:1996683/1‑150 (MQ=255)
tGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGc < 1:931366/150‑1 (MQ=255)
tGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGc < 1:653449/150‑1 (MQ=255)
gAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCa < 2:2318740/150‑1 (MQ=255)
aTGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCaaa < 2:2065268/150‑1 (MQ=255)
ggTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAg > 2:214293/1‑150 (MQ=255)
ggTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAg < 1:3042616/150‑1 (MQ=255)
tGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGcc < 1:453122/150‑1 (MQ=255)
tGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGcc < 1:3274097/150‑1 (MQ=255)
gCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCg > 2:2568313/1‑150 (MQ=255)
tCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGATGc > 1:1461115/1‑150 (MQ=255)
cAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGcc > 1:3224355/1‑150 (MQ=255)
aGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGccc > 1:3963620/1‑150 (MQ=255)
aGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGccc < 1:2815880/150‑1 (MQ=255)
aGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGccc < 2:2209397/150‑1 (MQ=255)
aGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGccc < 1:3199244/150‑1 (MQ=255)
gctgctACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCg < 2:3832761/150‑1 (MQ=255)
ctgctTCCAGCTCGCGGCCCGTCAGCGTCTCGGCACTCTCCAGCGTCACTTCAACGTGAATCTGAGTACGGGCTTCGTTAGCGACGCGATCTGGTCAATGCAGCGTTACGCCAGTTGCTTTAATCAGCATTGCTTTCAGCCGTTggaaga < 2:1254626/150‑6 (MQ=255)
ctgctACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGa < 2:1927928/150‑1 (MQ=255)
tgctACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGAc > 1:1106725/1‑150 (MQ=255)
tACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACAtt > 2:535939/1‑150 (MQ=255)
ccAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATtgt < 1:585754/150‑1 (MQ=255)
ccAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATtgt < 2:490701/150‑1 (MQ=255)
gCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCa > 2:2529185/1‑150 (MQ=255)
aCGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAAt < 2:2994930/150‑1 (MQ=255)
ggCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGa > 2:3123675/1‑150 (MQ=255)
ggCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGa > 1:3458108/1‑150 (MQ=255)
cAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTg > 2:1851549/1‑150 (MQ=255)
gTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTccc < 1:191603/150‑1 (MQ=255)
tcGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAgc > 1:2262971/1‑150 (MQ=255)
cGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAgcg > 1:1319520/1‑150 (MQ=255)
gCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAgcgc > 1:3849915/1‑150 (MQ=255)
gCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAgcgc > 2:2028612/1‑150 (MQ=255)
tctcCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCa < 1:3123263/150‑1 (MQ=255)
tctcCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCa < 1:584174/150‑1 (MQ=255)
ctcCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAg < 1:2631483/150‑1 (MQ=255)
ccAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGtt > 2:1751653/1‑150 (MQ=255)
ccAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGtt < 2:3405975/150‑1 (MQ=255)
ccAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGtt > 1:198528/1‑150 (MQ=255)
cGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTa > 1:3993653/1‑150 (MQ=255)
gTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTaa < 2:3811441/150‑1 (MQ=255)
tCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAAt > 2:238950/1‑150 (MQ=255)
aCTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAAtct < 1:840968/150‑1 (MQ=255)
cTTCAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAAtctt > 1:859873/1‑150 (MQ=255)
ttCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAAtcttc < 2:2001547/150‑1 (MQ=255)
cAACGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTg < 1:2574413/150‑1 (MQ=255)
cAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTg > 1:3535772/1‑150 (MQ=255)
aaCGTGACTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTgc < 2:66432/150‑1 (MQ=255)
aaCGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTgc < 2:3590037/150‑1 (MQ=255)
aaCGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCGGTCCCAGCGCCGCCAGTTGGTAATCTTCTgc < 1:2937165/150‑1 (MQ=255)
gACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGa < 1:2399487/150‑1 (MQ=255)
aCTCTGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAg < 2:3939444/150‑1 (MQ=255)
tctGAGTACGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAggg < 1:2818401/150‑1 (MQ=255)
ctGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGt > 2:3570574/1‑150 (MQ=255)
ctGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGt < 1:3256879/150‑1 (MQ=255)
gAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGa < 2:831858/150‑1 (MQ=255)
aGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGAc > 1:2510704/1‑150 (MQ=255)
aCGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACaaa < 2:4060362/150‑1 (MQ=255)
cGGGCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAAt > 1:1376950/1‑150 (MQ=255)
cGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAAt > 2:3134942/1‑150 (MQ=255)
ggCAACTTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAATcc > 1:1395299/1‑150 (MQ=255)
ggCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAATcc > 2:351879/1‑150 (MQ=255)
gCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAATCCa < 1:2428035/150‑1 (MQ=255)
aCGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAATCCAGCg < 2:2301640/150‑1 (MQ=255)
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GCCAGTTGTTCGTAAGGCTCCTGCTGCCAGTCAACGCCGCACGCGGTGGCTAACGCTGAATGGGTGCCATCAGCTGCTACCAGCACGCGGCCCGTCAGCGTCTCGCCACTCTCCAGCGTCACTTCAACGTGACTCTGAGTACGGGCAACGTTAGCCACGCGATCAGGGCAATGCAGCGTTACGCCAGGTGCTTTACGCAGCAATGCAAACAGCCGTTGCCCGACATTGTGCAATTCGACAACCTGTCCCAGCGCCGCCAGTTGGTAATCTTCTGCGGCGAGGGTGACAAATCCAGCGTG > CP009273/3046324‑3046622
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
