Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F204 I0 R1	1155	255.8	8356456	95.7%	7997128	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	4,144,787	C→A	39.4%	intergenic (‑12/‑142)	argE ← / → argC	acetylornithine deacetylase/N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,144,787	0	C	A	39.4%	286.3 / 263.6	236	intergenic (‑12/‑142)	argE/argC	acetylornithine deacetylase/N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding
Reads supporting (aligned to +/- strand): ref base C (67/76); new base A (38/55); total (105/131)
Fisher's exact test for biased strand distribution p-value = 4.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-01

Only 100 of 244 total aligned reads displayed.

CAAATCTTTAAACCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGATGTTGAA  >  CP009273/4144638‑4144936

 aaaTCTTTAAACCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCAGTGTTGACACACct                                                                                                                                                      >  2:407307/1‑150 (MQ=255)

  aaTCTTTAAACCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACctc                                                                                                                                                     <  2:1112086/150‑1 (MQ=255)

       ttAAACCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTc                                                                                                                                                <  2:3954054/150‑1 (MQ=255)

         aaaCCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCAt                                                                                                                                              >  2:3151959/1‑150 (MQ=255)

         aaaCCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCAt                                                                                                                                              <  1:617311/150‑1 (MQ=255)

          aaCCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATg                                                                                                                                             <  1:3565649/150‑1 (MQ=255)

          aaCCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATg                                                                                                                                             <  1:699496/150‑1 (MQ=255)

           aCCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGa                                                                                                                                            >  1:3228838/1‑150 (MQ=255)

           aCCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGa                                                                                                                                            >  2:1374143/1‑150 (MQ=255)

            ccAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGAt                                                                                                                                           <  2:3763188/150‑1 (MQ=255)

              aGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAg                                                                                                                                         <  2:3591960/150‑1 (MQ=255)

               gTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGt                                                                                                                                        >  1:68477/1‑150 (MQ=255)

                  cGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATc                                                                                                                                     <  2:437762/150‑1 (MQ=255)

                   gCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCa                                                                                                                                    >  2:1518039/1‑150 (MQ=255)

                   gCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCa                                                                                                                                    <  2:2094295/150‑1 (MQ=255)

                     cagcagAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAat                                                                                                                                  >  2:2864603/1‑150 (MQ=255)

                     cagcagAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGGAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAat                                                                                                                                  >  2:1242781/1‑150 (MQ=255)

                        cagAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATAtt                                                                                                                               >  1:2502494/1‑150 (MQ=255)

                         agagTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTc                                                                                                                              >  2:2381281/1‑150 (MQ=255)

                         agagTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTc                                                                                                                              <  2:95384/150‑1 (MQ=255)

                         agagTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTc                                                                                                                              >  2:2358434/1‑150 (MQ=255)

                         agagTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTc                                                                                                                              <  2:2847305/150‑1 (MQ=255)

                           agTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCAt                                                                                                                            <  1:1838155/150‑1 (MQ=255)

                            gTGATTTAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGAGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTcttt                                                                                                                           <  1:4136223/150‑4 (MQ=255)

                             tGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGc                                                                                                                          <  2:2694633/150‑1 (MQ=255)

                               aTTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAg                                                                                                                        <  1:2725126/150‑1 (MQ=255)

                                ttAAATCTGCAGTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGt                                                                                                                       <  2:2314562/150‑1 (MQ=255)

                                 tAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTa                                                                                                                      <  2:1963881/150‑1 (MQ=255)

                                    aTCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTAttt                                                                                                                   <  1:2173868/150‑1 (MQ=255)

                                      cTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTAt                                                                                                                 <  1:1913506/150‑1 (MQ=255)

                                      cTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTAt                                                                                                                 <  1:679802/150‑1 (MQ=255)

                                       tGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATg                                                                                                                >  1:3411397/1‑150 (MQ=255)

                                        gCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGa                                                                                                               >  2:2710081/1‑150 (MQ=255)

                                         cATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGaa                                                                                                              >  1:1427921/1‑150 (MQ=255)

                                         cATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGaa                                                                                                              >  1:1366529/1‑150 (MQ=255)

                                          aTTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAt                                                                                                             <  1:1879965/150‑1 (MQ=255)

                                            tGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATaa                                                                                                           >  1:3708672/1‑150 (MQ=255)

                                                  gATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATac                                                                                                     <  1:552960/150‑1 (MQ=255)

                                                  gATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATac                                                                                                     >  2:532348/1‑150 (MQ=255)

                                                  gATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATac                                                                                                     <  2:22293/150‑1 (MQ=255)

                                                   aTCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCAGTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATaca                                                                                                    >  2:2267049/1‑150 (MQ=255)

                                                     cGAGTTCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACt                                                                                                  <  2:563394/150‑1 (MQ=255)

                                                     cGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACt                                                                                                  >  2:47220/1‑150 (MQ=255)

                                                     cGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTATTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACt                                                                                                  <  2:2608160/150‑1 (MQ=255)

                                                     cGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAAGCTCGATAAATGGCGGTCATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATAGTCATGCAGTATTTATGAATAAAAATACACt                                                                                                  >  2:4026193/1‑150 (MQ=255)

                                                      gAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTa                                                                                                 >  1:1543210/1‑150 (MQ=255)

                                                      gAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTa                                                                                                 >  1:1543212/1‑150 (MQ=255)

                                                       aGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTaa                                                                                                >  1:3891583/1‑150 (MQ=255)

                                                        gTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAAc                                                                                               >  1:299449/1‑150 (MQ=255)

                                                          gCCTCGTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAATATTTATGAATAAAAATACACTAACGt                                                                                             <  1:2309217/150‑1 (MQ=255)

                                                             tctTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGa                                                                                          >  1:2525387/1‑150 (MQ=255)

                                                              ctTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAg                                                                                         <  2:663704/150‑1 (MQ=255)

                                                               ttCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGc                                                                                        <  1:503517/150‑1 (MQ=255)

                                                                tCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCg                                                                                       <  2:446769/150‑1 (MQ=255)

                                                                    tGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGtaat                                                                                   >  1:938296/1‑150 (MQ=255)

                                                                    tGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGtaat                                                                                   <  1:2586548/150‑1 (MQ=255)

                                                                      gcgcTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGtaataa                                                                                 <  1:2693264/150‑1 (MQ=255)

                                                                       cgcTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATaaa                                                                                <  2:1837046/150‑1 (MQ=255)

                                                                        gcTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATaaaa                                                                               >  2:3619718/1‑150 (MQ=255)

                                                                          ttATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAAcc                                                                             <  2:2690468/150‑1 (MQ=255)

                                                                            aTTGACGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACAACTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACcca                                                                           <  2:1989980/150‑1 (MQ=255)

                                                                                   gtgtGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCg                                                                    <  1:1004998/150‑1 (MQ=255)

                                                                                     gtgGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTa                                                                  <  2:2466990/150‑1 (MQ=255)

                                                                                     gtgGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTa                                                                  >  2:3855628/1‑150 (MQ=255)

                                                                                      tgGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTaa                                                                 <  1:3151959/150‑1 (MQ=255)

                                                                                          aaTCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTg                                                             >  1:1232028/1‑150 (MQ=255)

                                                                                             cAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAAt                                                          <  1:3874327/150‑1 (MQ=255)

                                                                                                agCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGtt                                                       >  1:1966330/1‑150 (MQ=255)

                                                                                                agCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGtt                                                       >  1:2906940/1‑150 (MQ=255)

                                                                                                   gcgGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTa                                                    <  2:2856523/150‑1 (MQ=255)

                                                                                                   gcgGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTa                                                    <  2:2773472/150‑1 (MQ=255)

                                                                                                   gcgGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTa                                                    <  2:2773501/150‑1 (MQ=255)

                                                                                                    cgGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTAc                                                   <  1:3316739/150‑1 (MQ=255)

                                                                                                      gTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGACTGTTTTACGt                                                 >  2:2544658/1‑150 (MQ=255)

                                                                                                      gTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGt                                                 >  2:1770603/1‑150 (MQ=255)

                                                                                                      gTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGt                                                 >  1:3481595/1‑150 (MQ=255)

                                                                                                        aaaTCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGttt                                               >  2:3771599/1‑150 (MQ=255)

                                                                                                           tctcGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAAc                                            <  2:3286231/150‑1 (MQ=255)

                                                                                                            ctcGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAAcc                                           <  2:233597/150‑1 (MQ=255)

                                                                                                             tcGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCt                                          >  2:3425145/1‑150 (MQ=255)

                                                                                                              cGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTg                                         <  1:1073410/150‑1 (MQ=255)

                                                                                                                           tAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATa                            >  2:1882412/1‑150 (MQ=255)

                                                                                                                            aaTTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATaa                           >  2:817321/1‑150 (MQ=255)

                                                                                                                            aaTTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATaa                           <  1:302691/150‑1 (MQ=255)

                                                                                                                             aTTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATaag                          >  1:3023191/1‑150 (MQ=255)

                                                                                                                             aTTTGTTTTTCATTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATaag                          >  2:946532/1‑150 (MQ=255)

                                                                                                                              tttGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATaaga                         <  1:117806/150‑1 (MQ=255)

                                                                                                                                  tttttCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAATATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGt                     <  1:2559116/150‑1 (MQ=255)

                                                                                                                                   ttttCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTg                    >  1:465410/1‑150 (MQ=255)

                                                                                                                                      tCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAAt                 <  1:3792157/150‑1 (MQ=255)

                                                                                                                                        aTTGTTGACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAg               >  1:1507006/1‑150 (MQ=255)

                                                                                                                                          tgttgACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGcc             >  2:1336938/1‑150 (MQ=255)

                                                                                                                                            ttgACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGcccc           <  1:372847/150‑1 (MQ=255)

                                                                                                                                            ttgACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGcccc           <  1:1243261/150‑1 (MQ=255)

                                                                                                                                             tgACACACATCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCg          <  2:1702847/150‑1 (MQ=255)

                                                                                                                                               acacacCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGAt        <  1:2971028/150‑1 (MQ=255)

                                                                                                                                                cacacCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGATg       >  2:2752004/1‑150 (MQ=255)

                                                                                                                                                  cacCTCTGGTCATGATTGTATCAATATTCATGCAGTATTTATGTATAAAAATACACTAACGTTGAGCGTAATATAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGAGGtt     <  2:3678200/150‑1 (MQ=255)

                                                                                                                                                   acCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGATGTTg    >  1:2196793/1‑150 (MQ=255)

                                                                                                                                                   acCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGATGTTg    <  2:3462702/150‑1 (MQ=255)

CAAATCTTTAAACCAGTCCGCCAGCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAGAGCGCGGTAAATCTCGATAAATGGCGGTAATTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGATGTTGAA  >  CP009273/4144638‑4144936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A