Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F2 I0 R1 88 153.3 2661736 98.2% 2613824 271.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,708,709 T→C 10.6% R597R (CGT→CGC)  rsxC → SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,7090TC10.6% 157.7 / 3.1 77R597R (CGT→CGC) rsxCSoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base T (40/20);  new base C (7/2);  total (49/28)
Fisher's exact test for biased strand distribution p-value = 7.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AACAGGCCCAGGCTACACAGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGC  >  NC_000913/1708426‑1708997
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                
aaCAGGCCCAGGCTACACAGCCTATCGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAACCCGTAAAGCACAAGCCAGAGCGAAACAGGCAGAACTGCAGCCAACTAACGACGCAGCAACCGCTGCTGGTCCACGTAAAACTGCCGTTGAAGCCGCTATCGCCCGCCCAAAAGC‑GCGC‑AAGCTGGACCAGCAACAGGCTAATGCGGAACCAGCACAACCCGTCGATCCGCCCAACTCCGCCCTCGCAGCGCCTATTGCCCGTGCCac                                                                                                                                                                                                                                                                                             >  2:1308141/1‑288 (MQ=255)
            cTACACAGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCaa                                                                                                                                                                                                                                                                                    <  1:292423/286‑1 (MQ=255)
               cacaGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGACGCCCGTACAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTTCCCGTGCCAAAGCGCGCAAGCTggc                                                                                                                                                                                                                                                                              >  1:532648/1‑288 (MQ=255)
                   cgattgggtgATTAAAGCGGGCGAACGCCCGGATAACAGTGAAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACGGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAc                                                                                                                                                                                                                                                                            <  2:525236/280‑1 (MQ=255)
                   accTATTGTGAATAAAGCTGGCGAAGGCCAGGGTAACTGTGCAATTATTGCATGACGTGAAACCCGTAAAACGCAAACCAGAGTGAGACAGGCAGAAAGGCAGCAAACGAACGACGCAGCAACCGGTGCTGAGAGACGTAAATCTGCGGTTGACTCAGTTATCGCCCTCGCCAAAGC‑GCGC‑AAGGTGGAACAGCAACAGGCTAGTGCCGAAACAGAACTACAGGTCGCTCCGCGCAAAGACGCCGTCGATGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAc                                                                                                                                                                                                                                                                            <  2:8751/286‑1 (MQ=255)
                    ccTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAATC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAATCCGGAACAga                                                                                                                                                                                                                                                                         >  1:1328631/1‑288 (MQ=255)
                      tATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGAAGCAAACTAACGACGCAGCAACCGTTGCTAATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCaa                                                                                                                                                                                                                                                                       <  2:1181564/289‑1 (MQ=255)
                       aTTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCACGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑CCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAACAACAGGTCGAGCCGCGCAAAGCCGCAGTTGCAGCCGCCATTGCCCGCGCTAAGgccaaaaaacccgaccagcagc                                                                                                                                                                                                                                                                      >  2:627192/1‑269 (MQ=25)
                         tgtgATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAACGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGACGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAAAGCaaacg                                                                                                                                                                                                                                                                    >  1:1252378/1‑286 (MQ=255)
                         tgtgATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAg                                                                                                                                                                                                                                                                    >  1:934184/1‑289 (MQ=255)
                            gATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGCACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCAGGAACCGCAACAGGCt                                                                                                                                                                                                                                                                 >  2:533020/1‑289 (MQ=255)
                             aTTAAAGTGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTa                                                                                                                                                                                                                                                                >  1:13888/1‑289 (MQ=255)
                              ttAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCCaa                                                                                                                                                                                                                                                               >  2:1284859/1‑289 (MQ=255)
                              ttAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCGGGAACCGCAACAGGCTaa                                                                                                                                                                                                                                                               >  1:707031/1‑289 (MQ=255)
                                  aGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCTAAGCCGCTATTGCCCGCGCCAAAGCGAGCAAGCCGGACCAGCAACAGGCTCATGcc                                                                                                                                                                                                                                                           >  1:204663/1‑288 (MQ=255)
                                     gggCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCggt                                                                                                                                                                                                                                                         <  1:813452/288‑2 (MQ=255)
                                     gggCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGa                                                                                                                                                                                                                                                         <  1:1124288/288‑1 (MQ=255)
                                     gggCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGa                                                                                                                                                                                                                                                         <  1:469070/288‑1 (MQ=255)
                                             gCCCGGATAACAATGAAAGTATTGCAGCGCGGGAAACACGGAAAGGTCAAGCACAAGCCAAACAGGCAGAACTGAAGGAAACTAACGACGCAGCAACCGCTGCTAATACACTGAAAACTGCCGTTGAAGCAGCTATTGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga                                                                                                                                                                                                                                                <  2:392543/289‑1 (MQ=18)
                                                 ggATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgcgcg                                                                                                                                                                                                                                                                                       >  2:1073940/1‑246 (MQ=255)
                                                 ggATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgcgcg                                                                                                                                                                                                                                                                                       <  1:1073940/246‑1 (MQ=255)
                                                       aagagCAATTATTGCAGCACGGGAGGCCCGTAAGGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGAGGCCGCAACCGGGGCTGATCCACGAAAAACTGCCGTAGAGGAAGCTATCGCCCGGGCCGAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATACGGAACCAGCACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGAt                                                                                                                                                                                                                                      <  2:247977/285‑1 (MQ=21)
                                                         gTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATc                                                                                                                                                                                                                                     >  1:1211026/1‑288 (MQ=255)
                                                           gCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTCTTGCCCGAGCCAAAGCGCGCAAACGGGAACAGAAACAGGCTAATGCGGCGCCAGAAGAACAGGTTGAtacca                                                                                                                                                                                                                                  >  2:890808/1‑285 (MQ=255)
                                                           gCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcg                                                                                                                                                                                                                                   <  1:647287/288‑1 (MQ=255)
                                                            cAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCCACAGGCTAATGCGGAGACAGAAGCACAAGTCGATCcgc                                                                                                                                                                                                                                  >  1:639999/1‑288 (MQ=255)
                                                                 attGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GAGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGTGACAACGCCCGAAAACGCGACCCGCAAACGGCTGTTGCGGAACCAGAACAACAGGTCGAGACGCCCaac                                                                                                                                                                                                                             >  2:1039727/1‑287 (MQ=25)
                                                                  ttGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCCGGAACAGCAACCGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAg                                                                                                                                                                                                                            >  1:1073594/1‑288 (MQ=255)
                                                                    gcagcaCGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGCAGATCCGCGTAAAgcc                                                                                                                                                                                                                          >  1:1133658/1‑288 (MQ=255)
                                                                    gcagcaCGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGAGTCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGATAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTCCACGTGCCAAAGCGCGCAAGCAGCAACAGAAACAGGCTATTACGGAACAAGAAGAACAGGTCGATCCGCGCAAAgcc                                                                                                                                                                                                                          >  1:1326446/1‑288 (MQ=25)
                                                                       gcaCGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCCATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGccgccg                                                                                                                                                                                                                      >  1:1086168/1‑289 (MQ=255)
                                                                          cGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGtt                                                                                                                                                                                                                    >  1:1033774/1‑287 (MQ=255)
                                                                          cGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCCGAACCACCAGTCGAACCGGGCAAAGCCGCCCTcc                                                                                                                                                                                                                   >  2:280639/1‑288 (MQ=255)
                                                                          cGGGAAGCACGGAAAGCGAAGGACACGGCCAAACAGGCAGAACTGAAGCAAACTAACGCGGCAGCAACCGTGGCTGATCCAGGAAAAACTGCCGGAGAAGCAGCTATCGCCCGCGCAACAGC‑GAGC‑AAGCTGGAAAAGCAAAAGGATAATGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTc                                                                                                                                                                                                                    <  2:874908/288‑1 (MQ=25)
                                                                              aaGCCCGAAAAGCGCAAAACAAGGCGAAACAGGCAGAACTTAAGCAAACTAACGACGAAGAAACCGCTGCTGATCGACGTAAAACTGCCGTTGAAGCAGCTAGCGCCCGGGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCGAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg                                                                                                                                                                                                                <  2:1146477/288‑1 (MQ=18)
                                                                               aGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGc                                                                                                                                                                                                               <  1:1284859/288‑1 (MQ=255)
                                                                                  ccGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAACGCGCGCAAGCTGGACGAGCACCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGcc                                                                                                                                                                                                           >  1:612763/1‑288 (MQ=255)
                                                                                          cgcAAGCCAGAGCGAAACAGGCTGAACGGCATCAAACTACCGACGCAGCAACCGTTGCTGATCCGCGTGAAGCGGCCGATGGGGAAGCGAGCGCCCGGGCAAAAACTGCG‑‑AAGCAGGAACAGCAACAGGAGAATGCCGACGCAGAAACCCGGGCTGATCCGCGGAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCaa                                                                                                                                                                                                                                                                       <  2:787528/221‑1 (MQ=255)
                                                                                          cgcAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGccc                                                                                                                                                                                                    >  1:893470/1‑288 (MQ=255)
                                                                                            cAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAGGCGCGCAAGCCGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGACGTCAACGACGCCATTGCCCGt                                                                                                                                                                                                  >  1:1151714/1‑288 (MQ=255)
                                                                                                    agCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGACCCCGAACAACCGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAATGCGCGCAAGCTGGAACAGCAACAGGCTCATg                                                                                                                                                                                                                                                             >  1:787528/1‑221 (MQ=255)
                                                                                                         aaCAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCACCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCCTCACAGCCGCGATTGCCCGTGCCAAAGCACGCaa                                                                                                                                                                                    >  2:1229574/1‑289 (MQ=255)
                                                                                                         aaCAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCCGGAACCACAACCGGCTAATGCGGACCCAGAAGAACCGGTTGATCCGCGCAAAGCCGGCGGCGACGGCGCCATTGCCAGCGCCAAAGccccaca                                                                                                                                                                                    >  2:963214/1‑283 (MQ=18)
                                                                                                                  aaCTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGCACAGCAACAGGCTAATGCGGAGCCAGAAGAAGAAGTCGAACCGCGCAAAGCCGCCGTCGAACCCGCCATTCCCCAGGCCACACCCCACAAGCTGGacga                                                                                                                                                                           >  2:207625/1‑286 (MQ=18)
                                                                                                                  aaCTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAGGCGCGCAAACCGGACCAGCAACAGGCTAATGAGGAGCCCGAAGAACAGGTCGATCCTCGCAAAGCCGCCGGAGGAGCCCGTCTATCCCGCGCCAAGGCACGCCAGCGGGCAcc                                                                                                                                                                           >  2:118597/1‑288 (MQ=18)
                                                                                                                   aCTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCATGCCAAAGCCCGCAAGCTGGAACa                                                                                                                                                                           >  1:1189001/1‑288 (MQ=255)
                                                                                                                                      gcagcaACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGAGCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcggtac                                                                                                                                                       <  1:890808/289‑6 (MQ=11)
                                                                                                                                             ccgttccagagcaccggaaacgtGCAGTTGCAGCGGCTATCGCCGCGGCCACAG‑‑GAGCGAAGCAGGAAGAGAAACAGGCAAATGGCCACCCAGAACAACGTGTCGAGCGGCGCAAAGCCGGCGGCGAAGCCGCTATTGCCGGGGCCAAAGCGGGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca                                                                                                                                                <  2:893470/267‑1 (MQ=14)
                                                                                                                                             cccgtgctgcTACACGTAAAACTGCAGTGGAAGCAGCTCACGCCCGCGCAAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCGAATGCGGAACCAGAACAACAGGTCGATCCGAGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGTCTAATGCCGAGCCAGaaca                                                                                                                                                <  1:729831/285‑1 (MQ=17)
                                                                                                                                             ccGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca                                                                                                                                                <  1:1229574/289‑1 (MQ=255)
                                                                                                                                                  gCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCTAAAGCGCGCAAGCTGCAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGAGATTGCAGGTGCACAAACACGCAAGCTGGAAAAGCAAACGGCCAATGCGTAGCCCGACGAACAgg                                                                                                                                           >  2:90040/1‑289 (MQ=14)
                                                                                                                                                    tGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCCATTGCCCGTGCCACAGCTCGCAAACCCGAACAGCAACCGGTCCATGCCggatcccgacaacagctt                                                                                                                                         >  1:708158/1‑272 (MQ=11)
                                                                                                                                                           cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAAAAGGTCGACCcgc                                                                                                                                  >  1:1106107/1‑289 (MQ=255)
                                                                                                                                                           cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCGCGCAAGCTGGAACAGCAAAAGGCTAATGCGGAACCAGAAGAACAGGTCGATACGCGCAACGCCGCCGTCAAAGCCGCTATTTCCCGTGCCAACGCCCGCAACGTGGAACAGCACCATGCTCGTGCCGAGACAGaacacccgtcacggctg                                                                                                                                   >  2:644024/1‑275 (MQ=17)
                                                                                                                                                                     ccGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTTGAAGCCGCTATTGCCCGCGCCCAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGGACCAGAAGCACAGGTTGAGCCGCGCAAAGCGGCCGTCGAAGCCGCTATTACCCGTGCCAAAGCAACGAAACCGGTCCAGCAAACGGCCAATGCTGCGCCAGAACACAAGGTCGAACCGAGCAAAgcgt                                                                                                                         >  2:696118/1‑286 (MQ=14)
                                                                                                                                                                     ccGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAACgcgg                                                                                                                         >  1:877148/1‑286 (MQ=255)
                                                                                                                                                                     ccGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAAGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGAAAACGGCCAATGACGAGCCAGAACACAAGGCCGATCAGCGGCAAgccg                                                                                                                         >  1:507963/1‑288 (MQ=17)
                                                                                                                                                                               agcgagcGCCCGCGCCAAAGC‑GCGA‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg                                                                                                                <  1:691522/281‑1 (MQ=255)
                                                                                                                                                                                   accGCCCGGGCCAAAGC‑GCGC‑AAGCTTGAACAGCAACAGGCTAATGCGGAACCAGAACAACCGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCAAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa                                                                                                          <  1:1222842/287‑1 (MQ=255)
                                                                                                                                                                                         cgcgCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgcgcg                                                                                                                                                                                                                                                                                       <  2:881887/110‑1 (MQ=40)
                                                                                                                                                                                         cgcgCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgcgcg                                                                                                                                                                                                                                                                                       >  1:881887/1‑110 (MQ=40)
                                                                                                                                                                                         cgcgCCAAACG‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACGGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGccc                                                                                                    <  1:534240/289‑1 (MQ=255)
                                                                                                                                                                                           cgcCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTACTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGCCAGCGCCACAGCACGCAAGCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAAGACAGGCTGCACCGCGCACAGCTGGCGttcgcgacgccattgcccag                                                                                                  >  2:593213/1‑270 (MQ=11)
                                                                                                                                                                                           cgcCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGACCAGCAACCGGCTAATGCGGAACCAGAAGCACAGGTCGATCCGCGCAAAGCTGCCGTAGACGCCGCTATTGCCCGCGCCAAAGCCCGCAAGCTGGAACAACAACAGGCTAATGCCGAACCAGAAAAACAGGTTGAAACGCGCAAAGCCGACGTcacactcgccatttcccg                                                                                                   >  2:581182/1‑271 (MQ=14)
                                                                                                                                                                                                      cgc‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGGTCGATCCGCCCAACGCCGCCGGCGCCGCCGCTATTGCCCGCGCCAAAgcg                                                                                         >  1:1268062/1‑288 (MQ=255)
                                                                                                                                                                                                       gc‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCCGGAACAGCAACAGGCTAATGCGGAACCCGAAGAACAGGTCGAACCGCCCAAAGCCGCCGTCGACGCCGCAATTGCCCGTGCCAAAGCCCGCAATCCGGCACAGCAACCGGCTAATGCGGAACCATAACAACAGGTTGAACCGCCCAAAGCCGCCCTAGACGCCGCTATTGCCCGAGCCAAAgccc                                                                                        >  2:1139670/1‑286 (MQ=14)
                                                                                                                                                                                                         gaaccaggAACAGAAACAGGCGAAGGCGGAACCAGAAACACCGGCTGAACAGCGAAAACCGGCCGTCGAAGCCGCTATTGCCCGGGCAAAAGCGGCCAAGCTGGAACAGCAACAGGATAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcg                                                                                       <  2:1211026/282‑1 (MQ=17)
                                                                                                                                                                                                                      cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGCGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTTGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACGGGacaag                                                                          >  1:318234/1‑284 (MQ=255)
                                                                                                                                                                                                                            gCTAATGCGGAACCAGAACAACAGGTCGACCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa                                                                       <  1:245389/285‑1 (MQ=255)
                                                                                                                                                                                                                             gtaagggggAACAAGGACAAGTGGTGGAACCGCGCAAAGCTGGCGTCGAAGCCGCTATAGCCCGGGACAAAGCGCGCAAGCGTGAAGAGCAACAGGTTAAGGCGGAACCAGAAGAACTGGCTGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATGGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg                                                                   <  2:1106107/281‑1 (MQ=14)
                                                                                                                                                                                                                                aTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGCGGCGGCTATTGCCCGCGCCAAAGCCCACAACCCCGAACAACAAAAGGCTAAAGACGAGGCAGAAAAAGAGGTCTATTCGAGCAACACGGCGCTCACAACGGCCATTGCTCGGGCCAAAgcccaacaactcgaaacccacaaggacca                                                               >  2:203020/1‑262 (MQ=2)
                                                                                                                                                                                                                                      aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAACCAGAAGAACAGGTCGACCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAACAGGAACAGCAACAGGCTAATGCCGCGCCAGAACAACAGGTCGATCCGGCCAAAGCCGCCGCCGAAGCCGCTCTTGCCCGGGCCAAAGCGGGCAAACGGGAACAGCAAACGGcaacagccgg                                                         >  2:245389/1‑280 (MQ=14)
                                                                                                                                                                                                                                                         tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTTGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGTCTAAAGCGGACCCAGAAGAACAGGTGGa                                       >  1:1194965/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGGCAGAAGAACAGGATGATCcgc                                  >  1:199729/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                        cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGAGCAAGGCCACCGGACAAGCCGCCAATGCCCGCGCCAAAGCCCGCAAACCGGAACAGCAACCGGCCAATGCGGAGCCagccgaaaatgccgatccggccaacagcgc                        >  2:748446/1‑260 (MQ=14)
                                                                                                                                                                                                                                                                              aGCCGCTATTGCTCGAGCTAAAGCGCGCAAGCGGAAACAGCAACAGGCTAATGAGGAACCAGAAGAACAGGTCGATCCGCGCAAAGTCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGa                  <  1:90040/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 cGCTATTGCCCGAGCCAAAGCGGGCAAGCTGGAACAGCAACAGGCTAATGAGGAACCAGAACAACAGGTCGATCCACGCAAAACCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGc               <  1:964966/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                             tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGGACCAGAAGAACGGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCCAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCAATCCGCGCAAAGCCGCCGTCGAAGCCGCCATTGCCCGAGCCAAAGCGCGCAAACGGTAACAGCAACCGGCTAATCCGGATCAAGAAGAACAGGTTGATCCGCGCAAAGCTGCGGTCGAAGCGGCTATTGCAcgg  >  1:466440/1‑288 (MQ=17)
                                                                                                                                                                                                                                                                                             tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGt                                          >  1:608792/1‑249 (MQ=255)
                                                                                                                                                                                                                                                                                             tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGTAGCGGCTATTGCAcgc  >  1:1135392/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                             tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCcgc  >  1:789420/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                             tGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcg   >  1:1126332/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                
AACAGGCCCAGGCTACACAGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGC‑GCGC‑AAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGC  >  NC_000913/1708426‑1708997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A