Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I0 R1 140 172.9 3477528 97.9% 3404499 226.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,151,328 T→G 17.8% A590A (GCA→GCC)  ppc ← phosphoenolpyruvate carboxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,151,3280TG17.8% 164.8 / 4.9 94A590A (GCA→GCC) ppcphosphoenolpyruvate carboxylase
Reads supporting (aligned to +/- strand):  ref base T (52/16);  new base G (12/8);  total (66/28)
Fisher's exact test for biased strand distribution p-value = 1.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCG  >  NC_000913/4151093‑4151559
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          
ggTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTGCGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTgcg                                                                                                                                                                                                                                         <  2:854806/239‑1 (MQ=255)
      cATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGcgccgcc                                                                                                                                                                                                                                    <  2:944238/238‑1 (MQ=255)
        tCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTGAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGTcgcg                                                                                                                                                                                                                                 <  1:1580375/239‑1 (MQ=255)
         cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTTGCGGTTGT‑GGCAGCAGCCCCGCCTGGGC‑AGGTGGGCCCCcccg                                                                                                                                                                                                                                 >  2:14557/1‑238 (MQ=255)
         cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCcgcg                                                                                                                                                                                                                                 <  2:487493/238‑1 (MQ=255)
                   gactgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCCGCGCCCCATGGGC‑AGGGGCGCCGCCCCGGccgaaggga                                                                                                                                                                                                                       >  1:487493/1‑231 (MQ=255)
                      tgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCCCGACCAAAGGAAacg                                                                                                                                                                                                                    >  2:37347/1‑238 (MQ=255)
                        acAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGGTGG‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGGCCAATGGAAccgcc                                                                                                                                                                                                                  >  2:874232/1‑238 (MQ=255)
                              cATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGGATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGGTGT‑GACCGCAGCGCCGCATGAGG‑AGGGGCGACGCCCCGCCCAATGGAAACGCCGCGAcac                                                                                                                                                                                                           >  1:35137/1‑237 (MQ=255)
                                tCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGGCCAATGGAACCGCCGCCACCGTg                                                                                                                                                                                                         >  2:1379756/1‑239 (MQ=255)
                                   atacggccgcGCCAGCTCTTTTTCGGCTCCGGGGGGGGCCGCAGGTTGGCTCCCAGAACCGCCCCGGTAAAAA‑GCGACGGGCGGCGGCGGGTGTTTTCTGGAAGACTA‑TTTTAAAGGCGGATCACCCCGCCCTGTTC‑GGTTCCGCGCAGGCCCCCTTTCAGG‑CTTCCTGGCGGTTGG‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCCCCGCGACCAATGGAACCGCCGCGACCGTGGaa                                                                                                                                                                                                      <  1:579563/230‑1 (MQ=255)
                                      aTGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GGCAGCAGCGCCCCCTGAGC‑AGGGGCGCCGCCGCGACCAAAGGAACCGCCGCGACCGTGGaaca                                                                                                                                                                                                    >  2:378841/1‑238 (MQ=255)
                                      aTGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGaaca                                                                                                                                                                                                    >  2:579563/1‑238 (MQ=255)
                                           aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCACAGCCCCCCATGAGC‑AGGGGCGCCGCCCCGACCCACTCAACCCCCGCGCCCCTGGCACCACGTcc                                                                                                                                                                                              >  1:1048432/1‑238 (MQ=255)
                                           aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGTACAACGTCa                                                                                                                                                                                              >  2:1025285/1‑239 (MQ=255)
                                           aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGTCGCCCCCGCGAACCAACGAAACGCCCCGCACGTGGTACCACgcc                                                                                                                                                                                               >  1:1449898/1‑236 (MQ=255)
                                            cGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGGCCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCCGCGCCCCCTGAGA‑ACGGGCGCCCCCCCGACCCATGGGAccgcccccgacgcggacacacgtca                                                                                                                                                                                              >  1:952816/1‑218 (MQ=255)
                                            cGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCCTGAGC‑AGGTGACCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACCTCa                                                                                                                                                                                              >  2:754345/1‑238 (MQ=255)
                                                  ctctctTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGTGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCCCAAt                                                                                                                                                                                       >  1:216405/1‑239 (MQ=255)
                                                                gcgggtgggcggttgattGGCTCCCAGAACCGCCCCGTTATAAG‑GCGACAGGCTGCTAAGGTTGTTTTGGGGAGGCTCT‑TTTTAAAAGCGAATC‑TCCCCCCCTTTTCGGGTTCCGCGCGGGCCGCCTTGCAGG‑CTTCCGGGGGGTTGT‑GACGGCCGCCCCGAATAAGA‑AGGCGCGCCCCCGCGCCAAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGc                                                                                                                                                                        <  1:1257194/223‑1 (MQ=255)
                                                                cggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTcc                                                                                                                                                                         >  2:1458671/1‑237 (MQ=255)
                                                                 ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGGGGGACAACGTCAGCTCAAT‑ACCCGCTTTTTCGcc                                                                                                                                                                       >  2:1511008/1‑238 (MQ=255)
                                                                 ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCa                                                                                                                                                                       >  2:98745/1‑239 (MQ=255)
                                                                 ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGGTGT‑GACAGCCGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGTGGAACAACGCCAGCTCAAT‑ACCCGCCTTTTCGCa                                                                                                                                                                       >  2:1257194/1‑239 (MQ=255)
                                                                           ggtgggtgggttcccaaacccccccTGTATAAAGGCGCACGGCTTCTGAGGGTGTTTCCCGGCACCCCT‑TATTTAAGGCGGTCTCCCCCGCCTTTTTC‑GGTTCCGCCGAGGCCCTCTTTCGGG‑CTCCCGGGCGTTTGG‑GACGGCAGCCCCGCAGGGGC‑GGGTGCCCCGCCGCGCCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCGGGTTTTGa                                                                                                                                                               <  1:383853/217‑1 (MQ=255)
                                                                                 tGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCCGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGG‑GACAGCCGCGCCGCCTGGGC‑AGGCGCGCCTCCGCGACCACTGCTACCCCCGCCACCGGGGAACCACGCCAGCTCAAA‑TCCCGCTTTTTCGCAGGTTTTGATTAAtat                                                                                                                                                        >  1:855836/1‑236 (MQ=255)
                                                                                     ttCGAGACTCGCCTGGGTATAAA‑GCGACGGGCGGGTGGCGGGGTTTTCGGAAAGACCA‑TTTTTAAAGCGGATCCTCGCGCTCGGTGG‑GGTTACGCGGAGGCCGCTTTTCGGG‑CTTCCGGGCGTTGGT‑GACAGCGGCGCCGAATGAGG‑GGGGGCGCCGCCGCACCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCt                                                                                                                                                   <  1:73895/239‑1 (MQ=255)
                                                                                         aGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCCTCCtgtg                                                                                                                                                >  2:1690075/1‑238 (MQ=255)
                                                                                                 ccgggTATAAC‑GCGCCAGGCGTCTGGGGGT‑TTTTTTGGCCAACCATTATTTAAAGCGACCCACCCCGCCTTGTGC‑GGTCGCGCCCGGGCCGCCTTGCGGG‑CTTCGTGGGGGTTGT‑AACAGCAGCGCCGCAGGAGC‑AGGGGCGCCGCCGCGCCCATTGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATAtt                                                                                                                                       <  1:37347/236‑1 (MQ=255)
                                                                                                                aCAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGGGCCGCATGAGC‑AGGGTCGCAGCCGCGACCAATGGAACCGCCGAGAACGGGGGACAACGTCAGCTTAAT‑ACCCGCTTTTTCGCAGGCATTGATTAATGACTCCTGTGCCTGACATTGT‑GACCCGGaa                                                                                                                           >  1:531633/1‑236 (MQ=255)
                                                                                                                aCAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATAATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGGACAGCCGCGCCCGCGGAACAACGTCAGCTCAAT‑ACCCGCTCTTTCGCAGGGTTTGTTTAATCACTCCTCTGCCTGATATGGC‑GCCCCggca                                                                                                                           >  1:798996/1‑234 (MQ=255)
                                                                                                                 catgctgctGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGTGC‑CGGTGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGGGGAACAACGTCAGCTCAAT‑ACCCCCTTTTTCTCAGGTTTTGTTTAAGGCACCCTGTGTCCGTTATTTC‑GCCCAGGAAGCt                                                                                                                        >  1:1058800/4‑238 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCCATGGAAACGCCGCGACCGTGGAACAACGGCAGCGCAAT‑ACCCGCTTTTTCGCAGGTTTTGAGTCATGCATCCGGTGCCTGATATTGC‑GCCCACGCAGCTg                                                                                                                       >  1:1370418/1‑239 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGGACAACGTCCGCTCAAT‑ACCCCCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑CCCCAGGAAGCt                                                                                                                        >  1:396318/1‑238 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATc                                                                                                                                                     >  2:964226/1‑210 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCt                                                                                                                        >  2:1057279/1‑238 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCt                                                                                                                        >  2:587605/1‑238 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCCCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCACCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTTTGCCTGATATTGC‑GCCCAGGAAGCt                                                                                                                        >  2:632650/1‑238 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAACAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGA‑GCCCAGGAAGCt                                                                                                                        >  2:1465896/1‑238 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGAACATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCCCCGCGACCAATGGAACCGCGCCGACCGTGGAACAAAGTCAGCTCAAA‑ACCCGCTTTTTCGCAGGTTTTGTTTAATTCATACTGTGCCTGATATTGC‑GCCCAGGAAgtt                                                                                                                        >  1:300973/1‑236 (MQ=255)
                                                                                                                 cAGGCTGCTGACGGCGCTTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCGCAGGCCCGCGTGTGC‑CTGTGCGCCGCCGCGACCAAAGGAACCGCGGACAACGTGGAACTACGCGCGCGCACTCACCCG‑TTGTTAGGACGCTTTGTTTACAGCATCCTGGTCCTGATATTGA‑TCCCAGGactcg                                                                                                                        >  1:956162/1‑234 (MQ=255)
                                                                                                                      tgctgACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCCCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GGCAGCAGCGGCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAAACGCCGCGGCCGTGGAACAACGTCAGCTCCAT‑ACCCGCTTTTTCCCAGGTTTTGGTTAATGCATCCCGTGCCTGATATTTC‑GCCCAGGCACCTGCCA‑t                                                                                                                  >  1:439244/1‑238 (MQ=255)
                                                                                                                        ctgACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGGAACCGGGGGACAACGTCCGCTCAAT‑ACCCGCCTTTTCGCAGGGTTTGGTTAATGCATCCTGGTCCTGATATTGC‑GCCCCGGAAGCTGCCA‑TCa                                                                                                                >  1:123756/1‑238 (MQ=255)
                                                                                                                               tgattgcggcgctaCCA‑TCTTGAAGGCGGATCACCTCGCCCTGTGC‑GGTTACGCGCGGCCCGCTTTTCGGG‑CTTGCTGGCGGTTGG‑GACGGCGGCGCCGCAGGGGC‑AGGGGCGCCCCCGCGCCAAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGc                                                                                                         <  1:537978/225‑1 (MQ=255)
                                                                                                                                  tttCTGGCAGACCA‑TATTTAAAGCGGATCTTACGGCCCTGTCC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTTT‑GACAGCCGCGCCGCAAGAGT‑TGGCGCGCCGCCGCGTTCAATGGAAACGTCGTGACCGCGGAACAACGCCAGCTCTAT‑TACCGCTTTTTCGCAGGTTTCGTTTAAAGCTTCCTGTGCCTGAAACTGG‑GTCCAGGaccccgcctcctctgccgcat                                                                                                        >  1:418494/1‑217 (MQ=255)
                                                                                                                                  tttCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCt                                                                                                     >  2:1613280/1‑239 (MQ=255)
                                                                                                                                                        aGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCC‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCa                                                                                >  1:109482/1‑239 (MQ=255)
                                                                                                                                                        aGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCCAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATTTTTTGCTGAGTCGGAATAGCCa                                                                                >  2:1498939/1‑239 (MQ=255)
                                                                                                                                                        aGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTTCTTAGTCGGAATAGCCa                                                                                >  2:1583873/1‑239 (MQ=255)
                                                                                                                                                        aGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCACATGAGC‑AGGTGCGCCGCCGCGACCAATTGAACCGCCGCGACCGTGGAACAACGTCAGAGCAAT‑ACCCGCGTTTTCGCCAGCTTTGAGTAATGAATCCTGTGCCTGCTATTGCTGCCCA‑GAAACTGCCA‑TCAAACCCGCATCTTTTGCTGTGTCGGCAGAGCCa                                                                                >  1:1350379/1‑239 (MQ=255)
                                                                                                                                                         gCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCaa                                                                               >  1:190224/1‑239 (MQ=255)
                                                                                                                                                            gATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCCTGAGC‑AGGGGGGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGGACAACGTCCGCTCAAT‑ACCCGCTTTTTTGCAGGATTTTATTAATGCCTCCCGTGGCATGTTTTGC‑CCCCAGACAGCTGCCACTCA‑TCCCGCCTCtttttgcgagttgggacagcccat                                                                              >  1:650808/1‑217 (MQ=255)
                                                                                                                                                            gATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCCGGTTTTGATTAATGCATCCTGTGCCCGATATTGC‑GCCCACGAAGCTTGCA‑TCACTTCCGCCTCTTTTGCTGAGTCGGAATAGCCAatca                                                                            >  1:733413/1‑239 (MQ=255)
                                                                                                                                                            gATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGACTAGCCAatca                                                                            >  2:1681263/1‑239 (MQ=255)
                                                                                                                                                            gATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca                                                                            >  2:828724/1‑239 (MQ=255)
                                                                                                                                                             atcatcTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTTC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCCatca                                                                            >  2:848884/1‑238 (MQ=255)
                                                                                                                                                             atcatcTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca                                                                            >  2:316024/1‑238 (MQ=255)
                                                                                                                                                                  ctcGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCa                                                                      >  2:1243893/1‑239 (MQ=255)
                                                                                                                                                                       ccTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGt                                                                 >  2:1310800/1‑239 (MQ=255)
                                                                                                                                                                           ttC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGCACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCCATCATCACCATCTGTTTg                                                              >  1:1201899/1‑238 (MQ=255)
                                                                                                                                                                           ttC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTg                                                              >  2:1637441/1‑238 (MQ=255)
                                                                                                                                                                           tgc‑GGTTACGCGCAGCCCGCTTTTCGGG‑CTTCGTGGGGGTGGG‑GACGGCAGCGCCGCAGGAGC‑AGGTGCCCCGCCGCGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAAt                                                                                                                                                          <  1:545072/146‑1 (MQ=255)
                                                                                                                                                                             tgggTTACGCGCGGGCCGCCTTGCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑GGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc                                                            <  2:106274/237‑1 (MQ=255)
                                                                                                                                                                             cgggTTACGCGCGGGCCGCCTTCCGGG‑CTTCCGGGGGTTGGT‑GACCGCAGCGCCGCATGAGC‑AGGCGCGCCGCCGCGACCAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc                                                            <  2:768177/237‑1 (MQ=255)
                                                                                                                                                                                gTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCTCTg                                                         >  2:1636148/1‑239 (MQ=255)
                                                                                                                                                                                    cgcgCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACATCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATTCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCACTCATCACCATCTGTTTCCCCTGGATc                                                     >  2:1516368/1‑239 (MQ=255)
                                                                                                                                                                                    cgcgCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGAGATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGCGTCGGAATAGCCAATCATCACCATCTGTTTTCCCTGAAt                                                      >  1:1098722/1‑238 (MQ=255)
                                                                                                                                                                                     gcgcAGGCCGCCTTTCAGC‑CTCCCTGGCGGTTGC‑GACCGCCGCGCCGCATGAGG‑AGGTGCCCCGCGGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCa                                                    <  2:26975/239‑1 (MQ=255)
                                                                                                                                                                                      cgcgGGCCCCCTTTCAGG‑CTTCCTGGCGGTTGG‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAAt                                                      <  2:1397449/236‑1 (MQ=255)
                                                                                                                                                                                      cgcAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCtgtg                                                                                                                                                >  2:545072/1‑148 (MQ=255)
                                                                                                                                                                                      cgcAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAg                                                   >  2:280971/1‑239 (MQ=255)
                                                                                                                                                                                         gggCCGCCTTGCGGG‑CTCCCTGGCGTTGGT‑GACAGCAGCGCCGAGAGGGA‑GGGGGCGCGCCCGCGACCAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc                                                 <  2:1192941/237‑1 (MQ=255)
                                                                                                                                                                                         aGGCCGTCTTTCGGG‑CTCCCGGGGGGTTGG‑GACGGCAGCGCCGCATGACG‑CGGCGCGCCCCCGCGACCAGGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc                                                 <  1:1637441/238‑1 (MQ=255)
                                                                                                                                                                                         aGGCCGCCTTCCGGG‑CTCCCGGGTGTGTAT‑GACAGCCGCGCCGCAGGAGG‑GGGCGCGCCGCCGCGACCAGGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc                                                 <  2:855836/238‑1 (MQ=255)
                                                                                                                                                                                          ggCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGGACACCGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGTAGCTGCCC‑TCACTCCCGCATCTTTTTCTGAGCTGGCATAGCCAATCATCACCCTCTGTTTCCCCTGACTCTGGca                                                >  1:724987/1‑237 (MQ=255)
                                                                                                                                                                                           gccgccTTTCAGG‑CTTCCTGGCGGTTTT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAAACGCCGCGACCGTGGGACAACGTCCGCTCAAT‑ACCCCCTTTTTCGCAGGTTTTGGTTAATGCATCCTGTGc                                                                                                                                               >  2:530668/1‑144 (MQ=255)
                                                                                                                                                                                             ccccTTTCCGT‑CTTGCTGGTGTTGGG‑GCCAGCGCCGCCTCATGAGC‑CGCGCCGCCGCCGCGCCATATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGa                                            <  1:1147984/237‑1 (MQ=255)
                                                                                                                                                                                               ccTTTCGGT‑TTTCCTGGGGTTTGT‑AACAGCCGC‑CCGGCTGGGCAAGGTGGCCCCCCGCGACCAATGGATCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          <  2:1662461/239‑1 (MQ=255)
                                                                                                                                                                                               ccTTTCAGG‑CTTCCGGGGGTTTGG‑GCAGGCGGCGCCGCATGGGC‑GGGTGCGCCGCCGCGACCATGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          <  2:123756/239‑1 (MQ=255)
                                                                                                                                                                                                ccttgcggcaccccTGGCGTTTGG‑GCCAGCGCCGCCGCAGGAGC‑AGGGGCGCCCCCGCGACCAATGGAGCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTACCCTGAATCAGGCCACGATa                                          <  2:724987/227‑1 (MQ=255)
                                                                                                                                                                                                cTTTCAGGTTTTCCGGGCGGTGGT‑GAACGGAGCGCGGCAGGGGG‑TGGTGGGCCCCCGGGCCCATGGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          <  2:1048432/239‑1 (MQ=255)
                                                                                                                                                                                                     ggg‑CTT‑CTGGGGGTTGAGGACAGCAGCGCCGGAGGGGC‑GGGTGCGCCGCCGCGACCAATGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt                                     <  1:739615/237‑1 (MQ=255)
                                                                                                                                                                                                       g‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCaa                                  >  2:970159/1‑239 (MQ=255)
                                                                                                                                                                                                           tCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAatat                               >  2:1508574/1‑239 (MQ=255)
                                                                                                                                                                                                           tCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCCACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGATGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAatat                               >  2:1040480/1‑239 (MQ=255)
                                                                                                                                                                                                                    ttGT‑GACAGCGGCCCCGCATGAGC‑GTGTGCGCCCCCGCGACCATTGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGagcagc                       <  2:1449898/238‑1 (MQ=255)
                                                                                                                                                                                                                              cagcGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATg              >  2:336731/1‑238 (MQ=255)
                                                                                                                                                                                                                               ggcgcCGGATGGGC‑AGGGGCCCCGCCGACGCGAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGa             <  2:300973/237‑1 (MQ=255)
                                                                                                                                                                                                                               agcGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          >  2:577413/1‑209 (MQ=255)
                                                                                                                                                                                                                                 cgccgcATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACa           >  2:441631/1‑238 (MQ=255)
                                                                                                                                                                                                                                   ccgcATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATc                                                                                                                                                     >  2:928270/1‑100 (MQ=255)
                                                                                                                                                                                                                                      cATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTg     >  2:1510750/1‑239 (MQ=255)
                                                                                                                                                                                                                                          ggC‑AGGTGCGCCGCCGCAACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg  <  2:216405/237‑1 (MQ=255)
                                                                                                                                                                                                                                           cgcgggTGCCCCCTCGCAACCATGGTAACCGCCGCGACCGTGGAACAACGTCAGCGCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑GCCCTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg  <  1:1109367/234‑1 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                          
GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAA‑GCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTC‑GGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCA‑TCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCG  >  NC_000913/4151093‑4151559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A