Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F17 I0 R1 124 155.2 3079696 98.3% 3027341 226.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,708,844 C→G 5.9% A642A (GCC→GCG)  rsxC → SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,8440CG 5.9% 288.5 / 5.7 126A642A (GCC→GCG) rsxCSoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base C (57/58);  new base G (4/5);  total (63/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

Only 100 of 126 total aligned reads displayed.

CCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCG  >  NC_000913/1708609‑1709079
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                            
cccGCGCAAACGCGCGAAAGAGCAAACAGCAAGAGGATAATGAGGACGCAGAAAAACAGGTCGATCCGCGCAAAGCGGCCGGCGAAGCCGCTATTGCCCGGGCAAAAGCAGGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAA‑AGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa                                                                                                                                                                                                                                            <  2:1256294/238‑1 (MQ=14)
aacacgaaaaaGCGGGCAAGCTGAAACAGCAACAGGCGAATAGGGAGCCAGAACGACAGGACGATCCGCGAAAAACCGCCGTCGAAGCAGCTATTGCCCGGGACAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa                                                                                                                                                                                                                                            <  2:560583/230‑1 (MQ=14)
  cgcgCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTCATGCCGAG‑cc                                                                                                                                                                                                                                        >  1:256832/1‑239 (MQ=255)
   gcgcCAAAGCGCGCAAGATGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAA‑CGCACGCAAGCTGGAACAGCAACAGGCTACTGCGGCG‑CCa                                                                                                                                                                                                                                       >  1:981576/1‑239 (MQ=255)
    cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGCACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCTCCCGCGCCAA‑AGCACGCAAGCTGGCACAGCACCAGGCTAATGCCGAG‑CCAg                                                                                                                                                                                                                                      >  1:372717/1‑239 (MQ=255)
    cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCAATTGCCCGTGCCAA‑GGCACGCAAGCGGGAACCGCACCAGGATAATGCCGAG‑CCAg                                                                                                                                                                                                                                      >  2:1373410/1‑239 (MQ=255)
    cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACA‑GGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCAATTGCCGGTGCCGA‑CGCACGCCAACTGGAACAGCAACAGGGTAGTGCGGAG‑CCAg                                                                                                                                                                                                                                      >  2:806209/1‑239 (MQ=14)
        aaaggacgaaaccaggaaacacAACAGGAAAAGGCGGAACCAGAACAAAGGGCCGACCCGCGAAAAGCCGCCGTCGAAGCAGCTAGTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGaaca                                                                                                                                                                                                                                  <  2:305282/218‑1 (MQ=14)
        aaaGCGCGCAAGCTGGAGGTGCGACAGGCAAATGCGGAATCAGAGAAACGGGTCGATCCACGGAAACCTGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGAAACAGCAACAGGCAAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGaaca                                                                                                                                                                                                                                  <  2:524332/239‑1 (MQ=14)
        aaaGCGACCAAGCTGGAACAACAACAGGCAAATGCGGAACCAGAAAAACAGGACGACCCGGACAAAGCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAGCA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGaaca                                                                                                                                                                                                                                  <  2:1529684/239‑1 (MQ=14)
          agagcgcaacgagaaccAGCAAGAGGCAAAGGCGGAACCAGAACAACATGTGGATCCGCGAAAAGCTGCCGTCGAAGCCGCTGTCGCCCGTGCCAAAGCGCGCAAGCCGGAACGGCAACAGGCTAATGCGGAACAAGAAAAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGaacaac                                                                                                                                                                                                                                <  2:487292/223‑1 (MQ=14)
                             cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCGCGCCCA‑GGCCCGCAAACCCGCACAGCAACAGGCTAATACCGAG‑CCAGCACAGCAGGTTGAGTCGCACAAAg                                                                                                                                                                                                              >  2:1231584/1‑238 (MQ=11)
                             cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAA‑AGCAAGCAAGCTGGCACAGCAGCAGGCTACTGACGAG‑GGCGAACAAGAggcgagtaggcgtaaag                                                                                                                                                                                                              >  2:579051/1‑223 (MQ=14)
                             cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGGTCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCACGCCAA‑AGCACGCCAACGGGAACAGCAACCGGCAGCTGCAGGA‑CCAGAACAACAGGTCGGACCGCGAAAAg                                                                                                                                                                                                              >  2:1474369/1‑238 (MQ=11)
                               ccaggaaaataccgAACCAGAACCCCAGGCCCACCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCAGGAACAGCAACAGCCTAATGCGGAACCAGAACAACA‑GGCCGATCCGCGCAAAACTGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAgccg                                                                                                                                                                                                           <  2:611533/226‑1 (MQ=14)
                                  ggCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCGATTGCCCGAGCCAA‑AGCGCGCAAGCTGGAACCGCAACCGGCTAATGCCGAG‑ACAGAACAACAGGTCCTACCCAGCAAAgccgcc                                                                                                                                                                                                         >  2:1106096/1‑238 (MQ=14)
                                       cgaccgacccAGAACACGAGGCCGCGCCACGAAAAACCGCCGTCAAAGCCGGAAGTGCACGAGCGAAAGCGCGCAAGCAGGAACAACAACAGGATAATGCCGAGCCAGAACAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAA‑AGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAG‑CCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGaa                                                                                                                                                                                                   <  2:313766/231‑1 (MQ=14)
                                       aTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCCGAAGAACA‑GGTCGATCCGCGCACAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAA‑AGCCCGCAAACCGGCACAGCAACAGGCTAATACCGCG‑CCCGAACAACAGGTCGCTCCCCCCACAgccgctgccgc                                                                                                                                                                                                    >  2:544563/1‑232 (MQ=14)
                                        tgaggAACCAGAACCACAGGTCGAGCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCAAAAGCGCGCAAGCTGGAACAGCAACAGCCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg                                                                                                                                                                                                  <  1:1217458/236‑1 (MQ=255)
                                             aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAA‑AGCCCGCAAACTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTTGAACCGCGCAAAGCCGCCGTCGAAGcc                                                                                                                                                                                                >  2:1510756/1‑236 (MQ=255)
                                             aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAATCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGcc                                                                                                                                                                                             >  1:1170833/1‑238 (MQ=255)
                                             aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTACTGCCGCA‑CCACAACAACAGGTCGATACGCGCAAAGCCGCAGTCGAAGCCGca                                                                                                                                                                                             >  2:1326345/1‑238 (MQ=255)
                                             aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCTTCGACTCCGCTCTTTCACGAGCCAA‑AGAACGCCAGCTGGAACAGCAACAGGCTAAAGCGGAA‑CCAGAAGAACAGGTGGAGCCGCGCAAAGCCGCCAGCGAACCCCCt                                                                                                                                                                                             >  2:504636/1‑239 (MQ=11)
                                              cccactaaaacaGGTCGGCCCCCGCAAAGCCGCAGTCGATACCGCTCGTGCACGGGCAGAAGCGCTGAAGCGGGAACAGCAACAGGCAAATGCGGAACCAGAACACCA‑GGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa                                                                                                                                                                                            <  2:1024086/231‑1 (MQ=14)
                                                   aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACA‑GGTCGATCCGCGCAAAGCGGCCGTCGAAGCGGCTATTGGACGCGCCAA‑AGCCAGCAAACGCGAACAGCAACAGGCTAATACCGAA‑GCAGAAGAAAAGGTTGAGCCGCGCAGCGCCGCCGTGGACGACGCCAttca                                                                                                                                                                                        >  2:403626/1‑236 (MQ=11)
                                                    accacaGGACAATACGCGTAAAAGGGCAGTCAACGCCTCTAGTGCCCGCGACAAAGGGCACAGGCCGGAACAGCATCAGGCAAATACGGAGCCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGACCGGGCCAA‑AGCGCGCAAGCTGGAACAGCAACAGTCTAATGCCGAA‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc                                                                                                                                                                                        <  2:1302198/234‑1 (MQ=11)
                                                           gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGACCGAGCCaa                                                                                                                                                                               >  1:1108232/1‑239 (MQ=255)
                                                                tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGCCGACGCCGCTATTGCCCGAGCCAAGgcca                                                                                                                                                                          >  1:276191/1‑237 (MQ=255)
                                                                tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc                                                                                                                                                                          >  2:581078/1‑239 (MQ=255)
                                                                  cgcgAAAAGCGGCCGGCGAAGCCGCAATTACACGGGCAGAAGCAGGAAAGCTGGAACAGCAACAGGATAATGCCGAGCCAGAAGACCA‑GGCCGACCCGCGAAAAGCCGCCGTCGAGGCCGCTAGTGCCCGCGCCAA‑AGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcg                                                                                                                                                                         <  2:698023/238‑1 (MQ=14)
                                                                   gccaaaaactgccgTAGAAGCCGCTATTGCCCGGGCCAAAGCGGGCAAGCAGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa                                                                                                                                                                       <  1:64763/229‑1 (MQ=14)
                                                                       aagaccgccgTCGAAGCCGCTAATGCCCGAGCCAAAGCGGGCAAGCGGGAACAGCAACAGGCTAATGCGGACCCAGCAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACg                                                                                                                                                                   <  1:1346935/235‑1 (MQ=255)
                                                                         aGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCGGCCGTCGCAGCGGCTATTGCCCGCGCCAA‑AGCACGCAAACTGGCACAGCAACAGGCTAATGCCGAG‑CCAGAAGAACAGGTCGACCCGCGCAAAGCGGCCGTCGAAGCCGCTAGTGCCCGCGcccagcaacacaagaggg                                                                                                                                                                 >  2:1134113/1‑223 (MQ=14)
                                                                              ccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAA‑AGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAAAAACAGGTCGAACCGCGAAAAGCGGCCGTCGCACCCGCCACTGCCCGAGCCCAAGCCAGCAAACCGGACCa                                                                                                                                                             >  2:565493/1‑238 (MQ=14)
                                                                                  gcgagcggatagacacagagcaaaaGCGCGAAAGCAGGAAAAACAACAGGAGAGGGCGGACACAGAAAAACG‑GGTAGAGCAGGGAAAAACTGCGGTAGAAGACGCTAGGGCCCGGGACAA‑AGCACGCAAGCTGGAACAGCAACAGGATAAGGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCaa                                                                                                                                                         <  2:397843/216‑1 (MQ=2)
                                                                                  cGAAGCCGCAAAGCCCCGGGCAAAAACGCGCAAGCAGGAACAACAGCAGGATAGTGCGGAAACAGAAAAAGA‑GGTGGACCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa                                                                                                                                                         <  2:1275325/238‑1 (MQ=14)
                                                                                             ttGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCg                                                                                                                                             <  1:1106096/239‑1 (MQ=255)
                                                                                                  cGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAA‑AGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATACGCGCAAAGCCGCCGTCCAAGCCGCCACGGCCCGAGGCACAGAGCGCAAACGGGGAAAGCACCCGGCCAATGCGGAGcc                                                                                                                                        >  2:1446704/1‑239 (MQ=14)
                                                                                                    gaccACAGCGCGCAAGCTGGAACAGCACCAGCTTAATACGGACCCAGAAGACCA‑GGCTGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAC‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag                                                                                                                                      <  2:744882/237‑1 (MQ=14)
                                                                                                     gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGACCAGCAACCGGCTAATGCAGAA‑CCAGAACAACAGGTTGATCCGCGCAAAGCGGCCGTCGAAGCGGCTATTGCCCGAGCCCAAGCGAGCAAGCGGGACCAGCAACCGCCTAATGCGGAACCaga                                                                                                                                     >  2:1279613/1‑239 (MQ=11)
                                                                                                     gCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag                                                                                                                                      <  1:1373410/238‑1 (MQ=255)
                                                                                                     gCCAAAGCGCGCAAGCAGGAACAGCAACAGGCTAATGCGGAACCAGAAGCACA‑GGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag                                                                                                                                      <  1:875928/238‑1 (MQ=255)
                                                                                                        aaaGCGCGCAAGCTGGAACAGCAACGGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga                                                                                                                                  <  1:1446704/239‑1 (MQ=255)
                                                                                                             gcgaAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAgg                                                                                                                             <  1:595949/239‑1 (MQ=255)
                                                                                                              cgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa                                                                                                                                                         >  1:655685/1‑210 (MQ=255)
                                                                                                              cgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGCACAGGt                                                                                                                            >  1:558336/1‑239 (MQ=255)
                                                                                                              cgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAAACGGTGGACCCTGCCAAAGCCACCGTCGAAGCGGCTATTGCACGAGCCACAGCGAGAAAAAGGAGACAACAACCGGCTAAAGCGGacttacaggaaccgga                                                                                                                            >  2:1442147/1‑224 (MQ=14)
                                                                                                              cgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAAAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa                                                                                                                                                         <  2:655685/210‑1 (MQ=255)
                                                                                                                  aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAt                                                                                                                        <  1:806209/239‑1 (MQ=255)
                                                                                                                      ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcg                                                                                                                                                                         >  2:14518/1‑186 (MQ=255)
                                                                                                                      ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcg                                                                                                                                                                         <  1:14518/186‑1 (MQ=255)
                                                                                                                       gAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc                                                                                                                    >  1:430230/1‑238 (MQ=255)
                                                                                                                             cAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCCCGAAAACGGGAACAGCAAACGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAg                                                                                                              >  2:624139/1‑238 (MQ=255)
                                                                                                                             cAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAg                                                                                                              >  1:686757/1‑238 (MQ=255)
                                                                                                                                     tAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCCCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCCGCCGttg                                                                                                     >  1:678940/1‑237 (MQ=255)
                                                                                                                                        tGCGGAA‑CAGGAGTACAGGGTCGACCCCCCCAATGCCGTCGGCAAGGCCAGTATTGCCCGAGCAAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAg                                                                                                  <  2:430230/239‑1 (MQ=14)
                                                                                                                                        cacggacacAGAAAAACA‑GGGCGAAGCGGCCAAGACCGCCGCTGAGGCAGCTAGTG‑CCGGGCCAACAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAC‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAg                                                                                                  <  2:255147/231‑1 (MQ=14)
                                                                                                                                             aaCCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc                                                                                                                                                              >  1:505155/1‑174 (MQ=255)
                                                                                                                                                 agaagaACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTAtt                                                                                          >  1:1389540/1‑238 (MQ=255)
                                                                                                                                                  gaagaaCA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGAGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCCATTg                                                                                         >  2:1365809/1‑238 (MQ=255)
                                                                                                                                                            gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCAGTCGAAGCGGCTATTGCACGCGCCaa                                                                               >  1:847350/1‑239 (MQ=255)
                                                                                                                                                             tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGcc                                                                                 <  1:581078/236‑1 (MQ=255)
                                                                                                                                                              cGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaaa                                                                              >  1:191062/1‑238 (MQ=255)
                                                                                                                                                                 tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAACCAGAAGAACAGGTCGATCAGCCCAAAGCGGCCGTCGAAGCGGCAATGAGACGGGCCAACGCAc                                                                          >  2:448857/1‑239 (MQ=14)
                                                                                                                                                                  ccacgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAA‑AGCGCGCAAGCGGGAAAAGCAACAGGCTAATGCCGAG‑CCAGAACACCAGGTCGACCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg                                                                         <  2:1373292/236‑1 (MQ=255)
                                                                                                                                                                  ccGCCCAATGTCGGCGACGAATACGCTAGTGGCCGTGACAA‑AGCACGCAAGCTGGACCAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg                                                                         <  2:174088/239‑1 (MQ=17)
                                                                                                                                                                    gcgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCGATTGCACGCGCCAAAGCACgaa                                                                       >  1:49072/1‑237 (MQ=255)
                                                                                                                                                                      gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCCGTTGCACCGGCTATTGCACGCCCCACAGCACGCaa                                                                      >  2:1279978/1‑238 (MQ=17)
                                                                                                                                                                      gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGGTCATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCaa                                                                      >  1:174088/1‑238 (MQ=255)
                                                                                                                                                                        aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGc                                                                    <  1:1069598/238‑1 (MQ=255)
                                                                                                                                                                            tcgccgTAGGAGACGCCAGTCCCCCTGGCGA‑ATCACCCAAGTTGGAACAGCAACAGCAGAATGCCGAA‑CCAGAAAACCCGGTTGATCGGCGCAAAGCCGCCGTCGAAGAAGCTATTGCCCGAGCCAAAGCGCGCAAACTGGAACAGCAACAGGCTAATGCCGACCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATCGCCCGCGCCAAAGCACGCAAGCTGGaa                                                               <  2:624397/238‑1 (MQ=17)
                                                                                                                                                                            ccgccgTCGAAGCCGCTATTGCCCGTGCCAA‑AGCGCGCAAGCGGGACCAGCAACAGGCTAATGCCGAA‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa                                                               <  1:1268056/239‑1 (MQ=255)
                                                                                                                                                                             accaggcaaaGCGGCTATTGCCCGGGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCACAACACCAGGGCGACCCGCGCAAAGCCGCCGACGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAAc                                                              <  2:256832/231‑1 (MQ=17)
                                                                                                                                                                                   cGAAGCCGCTGTGGCACGGGGCAA‑AGCCCGCGACCTGGAGCAGCAACCGCCTAATGGCGAG‑GCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAGCAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAAc                                                        <  2:49072/239‑1 (MQ=14)
                                                                                                                                                                                   cGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAACTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGAACCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaa                                                         <  1:1466673/238‑1 (MQ=255)
                                                                                                                                                                                   cGAAGCCGCTATGGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaa                                                         <  1:1442147/238‑1 (MQ=255)
                                                                                                                                                                                        ccGCTAGGGCCCGAGCCAA‑ATCACGCAAGCTGGAACAGCAACAGGCTAATGACGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGc                                                    <  1:321061/238‑1 (MQ=255)
                                                                                                                                                                                         cGCAATTGCCCGTGCCAA‑AGCACGCAAGCTGGGACAGCAACGGGAGAATGCCGAG‑CCAGAACAACAGGTCGAGCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa                                                                                                                                                          <  2:920707/135‑1 (MQ=17)
                                                                                                                                                                                          gCTATTGCCCGAGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa                                                 <  1:1533497/239‑1 (MQ=255)
                                                                                                                                                                                          aactaggcgcgggcgcaagggaCGGAAGCAGGAAAAGCAACAGGCGAATGCGGAG‑CGAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGAGGCCGCTATCGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTCGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt                                                   <  2:526525/217‑1 (MQ=14)
                                                                                                                                                                                                gCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt                                           <  1:448857/239‑1 (MQ=255)
                                                                                                                                                                                                gCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt                                           <  1:953159/239‑1 (MQ=255)
                                                                                                                                                                                                  ccGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc                                         <  1:1196306/239‑1 (MQ=255)
                                                                                                                                                                                                   cGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt                                                                                                                                                >  1:920707/1‑135 (MQ=255)
                                                                                                                                                                                                    gTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGATGCGGCTATTGCACGCGCCTCAGCACGCAAGCCGGAACAGCAACAGGCTACTGCGGTACCa                                       >  2:807403/1‑239 (MQ=255)
                                                                                                                                                                                                     tGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCag                                      >  1:22092/1‑239 (MQ=255)
                                                                                                                                                                                                      cacAA‑AGCGCGGAAGCGGGAAAAACAACAGGCTAATGCCGAG‑GCAGAACACCAGGTCGAGACGCGAAAAGCCGCCGACGAAGAAGCTATGGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAcc                                        <  2:673525/234‑1 (MQ=14)
                                                                                                                                                                                                      agacaaagccacgaaGCTGGAACAGCAACAGGCCAATGCGGAC‑CCAGAACCACCGGTTGACCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa                                       <  2:525726/225‑1 (MQ=14)
                                                                                                                                                                                                         aa‑aGCACGCAAGCAGGAATAGCTACAGGCGATGGGCAAA‑CAAGAAAACCAGGTCAACCCGCGAAAAGCCGCCGTAGAAGCAGCTATTGCCCGGGCCAAAGCGCGCAAACGGGAACAACAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga                                  <  2:821413/239‑1 (MQ=17)
                                                                                                                                                                                                            aGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc                                >  1:1365253/1‑239 (MQ=255)
                                                                                                                                                                                                                cGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGt                            >  1:825456/1‑239 (MQ=255)
                                                                                                                                                                                                                        tgAAAAGCACCAGGCTAATG‑CGAGACCAGAAGAACAGGACGATCCGCGCAAAGCCGCCGGCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcg                     <  2:1170833/237‑1 (MQ=14)
                                                                                                                                                                                                                               cAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGAAAACTGGAACAGCAACAGGCTAATGCGGTACCAGAAAAACAGGGTGATCCGGGCAAAGc             >  2:618835/1‑239 (MQ=255)
                                                                                                                                                                                                                               cAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTCTTGCACGCGCCCAAGCACGCAAGCTGGAACAGCAACAGGCTAATAACGTACCAGAAGAACAGGTTGATCAGCACaaatc             >  2:1415629/1‑237 (MQ=255)
                                                                                                                                                                                                                               cAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc             >  1:1124000/1‑239 (MQ=255)
                                                                                                                                                                                                                               cAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc             >  2:1268064/1‑239 (MQ=255)
                                                                                                                                                                                                                               cAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCAACGCCGCTATTGCCCGGGCCAAAGCGCGCCAACGGGCACAGCAACCGGCTAATGCGGAGGCAGAAGAACAGGGCGATCCGCGCAACGCCGCCGTCGGAACGGCTATGACACGCCCCAACGCAAACAATCTGGAACAGCAACAGGCTAATGCGGCACCAGAAAAACAGATTGTACCGCGCaaac              >  2:664597/1‑237 (MQ=14)
                                                                                                                                                                                                                                    ggCTAATGCCGTG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGTGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGAGCCAACGCACGCAAGATGGAACAGCAACAGGCTAATGAGGAACCAGACAAAAAGGATGATCAGCGAAAAAGGGCAg        >  2:883810/1‑239 (MQ=17)
                                                                                                                                                                                                                                        aaTGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGc    <  1:895965/239‑1 (MQ=255)
                                                                                                                                                                                                                                          tGCCGAG‑CCAGACAACCAGGCAGACGCGCGCAAAGCAGCGGTCTAAGCCGCTATCGCCCGAGCCAAAGCGCGCACGGAGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcg  <  2:782584/239‑1 (MQ=17)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                            
CCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACA‑GGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAA‑AGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAG‑CCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCG  >  NC_000913/1708609‑1709079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A