Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F19 I0 R1
|
36 |
100.3 |
1742442 |
97.4% |
1697138 |
269.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,708,844 |
C→G |
9.1% |
A642A (GCC→GCG) |
rsxC → |
SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,708,844 | 0 | C | G | 9.1%
| 145.7
/ 2.6
| 62 | A642A (GCC→GCG) | rsxC | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base C (36/18); new base G (2/5); total (38/24) |
| Fisher's exact test for biased strand distribution p-value = 9.25e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA > NC_000913/1708565‑1709129
|
tgagatagacgagagaCGTCAAACGGCCAGTGAACCACATACAGCCTGCGCCAAAGCGCGCAAAGTGTAACAGCAAAAGCGTAGTGAGGAGCCGAAGCAACTGAGCGATCCGCGCAAAGCCGCCGTCGAAGCTGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAg < 2:374527/272‑1 (MQ=14)
tCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGACCAGCAAAAGGCTAATGACGAGCCCGAAAAACAGGTCGa > 1:703937/1‑288 (MQ=255)
ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAGTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAAGCTAATGCCGAGCAAGAACAACAGGTcccgtctcctatcaaca > 1:374527/1‑272 (MQ=255)
ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGAAACCTGGAACAGCAACAGGCTAATGCCGAGCCAGCACAACAGGTCGATCTGCGCAAAgccg > 1:638703/1‑288 (MQ=255)
ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATACGGAACCAGA‑AGAACAGGTCGATACGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCAGTGCCAAAGCACGCAAGCCGGAAAAGCAAAAGGCTAATGACGAGCCAGAACTACAAGTAAATCCTCGAAAAgccg > 1:458997/1‑288 (MQ=17)
agcagcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCGACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGa < 1:59898/288‑1 (MQ=255)
cTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 1:708976/253‑1 (MQ=255)
cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATACGGAACCAGA‑AGAACAGGTCGAACCGCGCAAAGCCGACGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGACTAATGCCAAACCAGAACAACAGATAGAGCCGCGCAAAGCAGCCGTTTAAGCAGCAATTGCCCG‑a > 1:803814/1‑289 (MQ=14)
aCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGACCG‑AGCCAAAGCGCCCAAACGGGACCAGCaa > 1:355065/1‑289 (MQ=255)
aCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAACCAGAAGAACAGGTCGATCCGCTCCAAGCCGCCAACGAAGCCGCTATTGCCCG‑AGCCAAACCGCGCAAACGGCAACAGCa > 1:441993/1‑288 (MQ=255)
aGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑GGCCAAAGCACGCAAACGGGAACAGCAAcc > 1:676802/1‑289 (MQ=255)
ggACCCAGAACCACAGGTCGATCCGCGCACACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGAGCAAGCTGGAACAGCAACAGCCTAATGCGGACCCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCg < 1:367377/289‑1 (MQ=255)
aaCCAGAACAACAGTTCGATCCTCTCAAAGCCGCCGTCGAAGCCGCAATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGt < 1:368601/229‑1 (MQ=255)
aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGCGCCCGAACAACAGGTCGCTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTCCCCG‑AGCCAAAGCCCGCAAACGGGAACAGCAACCGCCTAACGCGGa > 1:313653/1‑289 (MQ=255)
aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGATATACACCGTGCCAAAGCACGCAAGCGGGAACAGCAACAGGCTAATGCCGAGCAAGCACAACAGGTAGAACCGCCCAAACCCGCCGCCGACGACGCTATAGCCCGCACCCAAAAGCCGAAAAC‑GGAACAGCAACAGGCGAATGGGGa > 2:649171/1‑289 (MQ=14)
aacaGGGCGAGCCGCGCAAAGCTGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:581297/289‑1 (MQ=255)
aacaGGCCGATCCGCGTAAAGCCGCCGTCGAAGCCGCGATTGCCCGTGCCAAAGCGGGCAAGCGGGAACAGCAACAGGCTAATGCGGAACCCGA‑AGAACAGGTCGCTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:743784/289‑1 (MQ=255)
aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGTGCCAGAAAAACAGGTCGATCCCCGCAAAGCCGCAGTCGACGCCGCAATTGCCCG‑GCCCAAGGCCCACAAACCAGAACAGCAACAGGCTAATgacgagtcacaaaaaaagctcta > 2:519440/1‑267 (MQ=14)
tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAACCCGA‑ATAACAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTCCCAAAGCACGCAAACTGGAACAGCAACAGGCTAATGCCTATCCCGCACACCCAGTCGAACCCCCCGAAGCCACCGTTGAAGCCACCATTCCCGC‑CGCCAAAACCACTCAACGAGCACAGCACACAGATAATGTGCAGCCagaaaccaaagccac > 2:51961/1‑277 (MQ=2)
gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCCAAGCCCGCCAGCTGGAACAGCCACAGGCTATTGCCGCACCATAACAACAGGTTGATCCACCTAAACCCGCCGTCACCACCGCCATTGCCCC‑AGCCACTGCCCGCCAACAGCCCTTGCTACCCGCTCACGCGGACGCAGCAGAACAGGtacactcgc > 2:733134/1‑280 (MQ=9)
cagaGCCGCAGGCGAAGCCGCTATTGCCCGTGCGAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgcg < 1:649171/285‑1 (MQ=255)
tgaagcgcgtATCGCCCGCGCCAAAGCGGGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCCGA‑ACACCAGGTCAATCCGCCCAAAACCGCCGTCGAAGCCGCTATTACCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGt < 1:276116/279‑1 (MQ=14)
aGCCGCTAGTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGa < 1:287411/288‑1 (MQ=255)
acGCCATCGCCCGCGACAAAACACGCAATCGTGATAATCAACAGGCTAAGGCTGAAACAGAGAGAAAAGG‑CGACAGGCGCAAAGCAGCCGTCGATGCTGCTAGTGCCCGCGGCAAAGCACGCAAGCTAGAACAGCAACAGGCTAATGCGTGGCAAGAACGACTAGTCGATCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGc < 2:638703/288‑1 (MQ=255)
gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCCGAACAACAGGTCGAACAGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCG‑CGCAAAAGGCCGCAAACGGGAACAGCAACCCGCTAATGAGGAGCCAGAAGAACAGGTTGAGCCGCGCAAAGCCGCCGTCGACACGGCTATTCACCGCGCCAAGGCaa > 2:865525/1‑287 (MQ=14)
aaGCGGGAACAGCAACAGGCTAATGCGGAACCAGA‑ACAACCGGTCGACCCGGGCAAAGCCGCCGTCGAAGCCGCTATTACCCGGGCCAAAGCACGCAAGCAGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCa < 1:382549/289‑1 (MQ=255)
gcgaCAGGCAACTACGGCAGCAGA‑AACACTGGTCGAGCCGCGTAAAACCGCCGCCGAAGCCGCTATGACACGGGCCAAAGCACCGAAGCTGGAACAGCAACAGGCGAATGCGGAGGCAGAACAACATGTCGATCCGGGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAAc < 2:824531/284‑1 (MQ=255)
cAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAAAACAGGTCGATCCGCCCAAAGCCGCCGACGAAGCCGCTATTTCCCG‑AGCCAAAGCGCGCAAACCGGACCAGCAACCGGCTAATGCGGAGCCAGAAAAGAGGGTTGAATAGAGCAAAGCCGCCGTCGAACCGGCTATTGGCCGCGCCAAAggaacaaagcagggcgcag > 2:635251/1‑271 (MQ=14)
acgggCTAATGCGGAACAAGA‑AGAACAGGTCGATCCACGCAAAGCCGCCGTTGAAGCCGCTATTGCCCGTGCCAAAGCACGCAGGGTGGAACAGCAACAGGCTAAAGCGGAGCAAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaa < 1:51961/286‑1 (MQ=17)
cTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGACAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACa < 1:698573/286‑1 (MQ=255)
aaCCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACCGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGCAAGCCGGAACAGCACCAGCCTAATgagc > 1:104018/1‑285 (MQ=255)
aaCCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGATCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCTGTCCAAGCGGCTATTGCCCTCGCCAACGCACGCCAGCTGGAACAGCACAAGGCCAATGCGGt > 1:790061/1‑289 (MQ=17)
aaCCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCCCGCAAACCGGAACAGCAACAGCGCAATGCGGAGACAGAAGAACAGGTTGATCAGCGCAAAGCTGCCGTGTCAGCGGCTATTGCCCGGGCCTACGCCCGCCACCAGAAACAGCACCAGGTCAATGCggg > 2:839615/1‑288 (MQ=14)
aaCCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCACAAAGCCGCCGTCGAAGCGGCAATTGCACGAGCAAAAGCCAGCAAAGCGGAACACCAAACGGCTAATGCGGt > 2:386898/1‑289 (MQ=14)
a‑agaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCCGGAACAGCAACAGGCTAATGCGGTACCaga > 1:551170/1‑289 (MQ=255)
aaaaCAGGTCGACCCGCGCAAGGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCag < 1:386898/285‑1 (MQ=255)
tctggttgttCCGCTCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGCCCG‑AGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:297003/279‑1 (MQ=255)
aGGACGATCCGGGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGTCGATATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCTGCCAAGGCGGAGCCAGACGAAAAGGATGATGCGCGCAATGCGGCCGTCAACGCTGCCCTTGCACGCGCCAACGGCAGCAAGCCGGAACAGCAACAGGCTCATGCGGTACCACACGAAcc > 2:709660/1‑288 (MQ=17)
gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGCAGAACAgg > 1:200845/1‑289 (MQ=255)
cGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaa > 2:512738/1‑88 (MQ=255)
cGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaa < 1:512738/88‑1 (MQ=255)
tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGCACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGCACAGCAACCGGCTAATGCGGAGCCAGAAGCACAGTTTGATCCGCGCAAAGCTGCCGGTGCAGCGGCTCTGGCCCGAGACCAAGCCCGCAAGCTGGACCAGCAAACGGCTAAAGCggcagccacagaaaaggttagc > 2:625841/1‑269 (MQ=14)
cgtaaaactgccgTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑CTCCAAAACACGCCAGCTGGAACAGCCACAGGCTAAAGCGGAACCAGAAGAACAGGTCGAACCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGACGGAACAGCAAAAGAGCAAAGCGGAACCAAAAACACAggccagacca > 2:287411/10‑280 (MQ=14)
cgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAAAAGGCTAATGCGGTAGCAGAAGAACAGGTTGATCcg > 1:644361/1‑288 (MQ=255)
cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa > 1:688868/1‑244 (MQ=255)
cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCAGCCGTAGAAGCGGCTCTTGCCCGCGCCAAAGCACGCAAACTGGAACAGCCACAGGTTAATGCGGTACCAAAAGAACAGGTAGAtacacgg > 2:384343/1‑283 (MQ=17)
cGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGccc < 1:839615/289‑1 (MQ=255)
tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAg > 2:32769/1‑179 (MQ=255)
tGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAg < 1:32769/179‑1 (MQ=255)
aacacACGCAAGCAGCAAAAACACAAGGTGAATGAGGAGGCAGAACGACAGTTCGAACCGCGAAAAGCCGCCGGGGAAGACGACGTTGCCGG‑GGCCAAAACGCGGAAACGGGAAGAACAACGGGCAAATGCGGAGCCAGGAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCt < 2:371309/284‑1 (MQ=17)
aGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAg > 1:225115/1‑289 (MQ=255)
cGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGGTGCCGCGGCCATTGCCCGCGCTCAGGCCa > 1:839104/1‑289 (MQ=255)
gCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCCGAAGAAAAGGATGATCCGCGCCAAGCGGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGAAAACCGGAACGGAAACAGGCTAATGCGGTACCAGAAGAAACGGTTTGTCCGCGTAAACAGGCAGATgaccggtacatttccggcggtgcggcacc > 2:693655/1‑261 (MQ=14)
gCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGGGCTCAGGCCaa > 1:21080/1‑289 (MQ=255)
cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGACCGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGAACGCGCCAAAGCACGCAAGCCGGAACAGCCACAGGCTAATGCGGTACCAGAAGAACAGGTTGAACCGCGCCAAGCGGCCGTTTCAGCGGCAATTTGCCGCGACCAGGCCcacaaacacccacagg > 2:863600/1‑279 (MQ=17)
cAACAGGCTAATGCCGCGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATACGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCCGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGCTCAGCCCAAAGCGGCAGTTGCCGCGGCTATTGCCAGAGCTCAGGCAAAAAAAGCCGccccg > 1:848637/1‑286 (MQ=18)
cAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCC‑AAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa < 1:475665/112‑1 (MQ=255)
cAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCC‑AAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 2:475665/1‑112 (MQ=255)
cgaaggCCGAGCCAGACCAACATGTCTGTCCGCGCAAACCCGCCGTCGAAGCCTCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGTCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACGGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGaa < 1:693655/281‑1 (MQ=255)
cTAATGCAGGGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGa < 1:519440/285‑1 (MQ=255)
aTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGAGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCCGCTATTGCACGCGCAAAAGCACGCAAGCGGGCACAGCCACAGGCTAATGCGGTACCAGAATAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTCCCCCCCCCACAGCCAAAAAAGCCTCCCAGCACAAgggcga > 2:377780/1‑285 (MQ=18)
tGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTa > 1:432004/1‑289 (MQ=255)
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AACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGA‑AGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCG‑AGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA > NC_000913/1708565‑1709129
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
