Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F4 I0 R1 65 125.5 2201552 98.4% 2166327 263.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,708,844 C→G 7.9% A642A (GCC→GCG)  rsxC → SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,708,8440CG 7.9% 232.9 / 4.6 93A642A (GCC→GCG) rsxCSoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base C (45/38);  new base G (4/5);  total (50/43)
Fisher's exact test for biased strand distribution p-value = 7.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA  >  NC_000913/1708558‑1709129
                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                               
acgCAGCAACGGTGGCTGATCCACGTAACACTGCCGTTGAAGCAGCTAACGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGa                                                                                                                                                                                                                                                                                               <  1:532162/289‑1 (MQ=255)
 cgCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAACTGGAA‑CAGCAACAGGCTAATGCCGa                                                                                                                                                                                                                                                                                               >  1:249212/1‑288 (MQ=255)
 cgCAGCAACCCGTGATGATCCACGTAAACCTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑g                                                                                                                                                                                                                                                                                             <  1:764157/289‑1 (MQ=255)
     agacccGGTGTTGGTCCCCCTAAATCTGCCCTTGACGCGGCACTCGCCCGGTCCACAGCACGCAAGCGGGAACGGCAACAGGCGAATGCAGAACCAAAACAACGGGCCGATCCCCGCAAAGCCGCCGTCGAA‑GCCGCTCTTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAg                                                                                                                                                                                                                                                                                         <  2:848329/285‑1 (MQ=14)
       aaCCGTTGCTGATCCTCGGAAGACTGCAGTCGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAACCAGAACAACATGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCATAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGTCGA‑GCCa                                                                                                                                                                                                                                                                                          <  1:577384/286‑1 (MQ=255)
              gCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAgg                                                                                                                                                                                                                                                                               >  1:364421/1‑289 (MQ=255)
                 gATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCCATGCAAGCCAGCCGCGC‑CACACACAATCTAATGCGGA‑GCCCGag‑caacggcacg                                                                                                                                                                                                                                                                            >  2:1088413/1‑283 (MQ=14)
                  aTCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑ACCAGAA‑CAACAGGt                                                                                                                                                                                                                                                                              >  1:848329/1‑286 (MQ=255)
                       cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGAAAAGCCGCCGTCGACGCC‑GATATTGGGCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCAAATGCGGA‑GCGAGCA‑CAAAAGGTCTATctg                                                                                                                                                                                                                                                                       >  1:125187/1‑286 (MQ=17)
                       cGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑AAACAACAGGCTAACGCCGA‑GCCAGAA‑CAACAGGTCGCTCcg                                                                                                                                                                                                                                                                       >  1:881372/1‑288 (MQ=255)
                            aaCTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCC‑GCTATTGCCCGTGCCAAAGCAAGCAAGCTGGAA‑CAGCAAAAGGCTAATGCCGA‑GCCAGAA‑AAACAGGTCGATcaccccaaa                                                                                                                                                                                                                                                                 >  1:1097429/1‑281 (MQ=255)
                                 ccGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGC‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAgccg                                                                                                                                                                                                                                                             >  1:987805/1‑288 (MQ=255)
                                  cGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGAC‑GCCGCTATTGCCCGCGCCCAAGCGCGCAA‑CTGGCAACTGTAACCGGCTAATGCGGCAGCAGAAGAACAGGGTGAAGCGCGCAAAGCGGCCGTTGACGCC‑GCTATTGCCCGAGCCAAAGCAC‑CAAACCGGAACCCGCACCAAGCTAATGCTGC‑GCCAGAAGAAACAGG‑CGATCcgctgcaaggcga                                                                                                                                                                                                                                                            >  2:185736/1‑278 (MQ=2)
                                           tgagcaaaacggcgcGAACGCCCGCAATGTTGAACAGAACCAGGATAAGGATGACCCAGACGCACAGGACTACCCGCGCAAGGCCGCCGTCGAA‑GCCGCTGTTGCCCGGGCCAAAGTACGCAAGTGGG‑AACAGCAACAGGCTACTGCCGAGCCATAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGGGCCAAAGCGCGCAAACGGGAA‑CAGCAACCGGCTAATGCGGA‑GCCAGAA‑GAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGc                                                                                                                                                                                                                                                   <  2:423954/277‑1 (MQ=14)
                                              tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGG‑AACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAACCGCGCAAAGCCGCCGTCGACACC‑GCTATTGCCCGAGCCCAAGCGCGCAAACCGGAA‑CAGCAAAACGCTAATGCGTAGGCCAGAA‑CACACGGTC‑AGCAGCGAAAAGCCGCCGTAGCAGCCga                                                                                                                                                                                                                                                >  2:571689/1‑287 (MQ=14)
                                                       cgcCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAACTCGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CCACAGGTCGAACCACGAAAAGCCGCCGTCGACGCGGCCATTGCCCGa                                                                                                                                                                                                                                      >  1:79024/1‑289 (MQ=255)
                                                        gcCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACCGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCCCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCCCGCACGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CACCAGCTCGATCCGCGCAAACCCGCCGCCGAAGCCCCAATCGCCCGa                                                                                                                                                                                                                                      >  1:291831/1‑288 (MQ=14)
                                                                                cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCCAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGacaagc                                                                                                                                                                                                             >  1:321294/1‑284 (MQ=255)
                                                                                cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTTGAAGCC‑GCTATTGCCCGTGCCAAAGCAAGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAAAAGGTCGATACGCGCAACGCCGCCGTCGAAGCCGATATTGCCCGAGCCAAAGCGAGCAAACCGGAACacc                                                                                                                                                                                                             >  1:693303/1‑287 (MQ=17)
                                                                                  caaGGCAAATGCGGACCAAGACAAACCGGTCGATCCGCTGAAAGCCGCCGCCGAA‑GCCGCTATTGCCCTGGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCaa                                                                                                                                                                                                           <  1:602318/287‑1 (MQ=17)
                                                                                                aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAAAAGGCTAATGCCGA‑GCCCGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAACCGCTATTGCCCGAGACAAAGACCGCAAACGGGAACAGCAACCGGCTAATGCCGa                                                                                                                                                                                             >  1:795829/1‑289 (MQ=255)
                                                                                                 cttaacagacagtgtggATCCG‑GCAAGTCCGCCGTCCAATGCCGCTCTTGCCCGTGCAACAACACGACAGGTGG‑AACAGCAACAGGCTAATGCAGGAACAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GTTAGTGCCCGGGCCAAAGCACGCAAGCTGGAA‑CAGCAGCAGGCTAATGCCGG‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa                                                                                                                                                                                             <  2:877889/272‑1 (MQ=14)
                                                                                                 aCCAGAAAAACAGGCCGAGCCGCGAAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa                                                                                                                                                                                             <  1:771253/288‑1 (MQ=255)
                                                                                                       acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag                                                                                                                                                                                        <  1:541246/287‑1 (MQ=255)
                                                                                                         aacaGTTCGATCCGCGGAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga                                                                                                                                                                                    <  1:266838/289‑1 (MQ=255)
                                                                                                             ggTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑GAACAGGTCGAACCGCGCAAAGCCGCCGTTGCAGCCGCTATTGCCCGGGCCAAGCCCCGTCAACCGGCACAGCAGCCGGCtgcacacgcagccgaccagacg                                                                                                                                                                                >  2:451625/1‑268 (MQ=14)
                                                                                                                   gccccccAAAGCGGCCGTCGAC‑GCCGCGATGGCCCGGACCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATTCCGAACCGGAAGACCAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATGGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACCGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAt                                                                                                                                                                          <  1:147502/283‑1 (MQ=17)
                                                                                                                        gcAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACCggccacttacac                                                                                                                                                                     >  1:877889/1‑279 (MQ=255)
                                                                                                                         cAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCCGAAGAACAGGTTGATccccca                                                                                                                                                                    >  1:821817/1‑285 (MQ=255)
                                                                                                                                        a‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGac                                                                                                                                                     >  1:488651/1‑288 (MQ=255)
                                                                                                                                         tggcgcaagtgagaaggacgcagtagccAAGCCGG‑AAAAACCGCAGGTGAATGAGGAACCAGAAGACGAGGACGATAGACGCAAGTCCGCAGTCGAGGCC‑GCTATTGCCGGGGCCAAAGGACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGG‑GCCAGAA‑TAACATGTCTAACCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGAAAACGGGAACAGCAACCGGATAATGCGGAGCCAGAAGAACAGGGTGATCCGGGCAAAGCTGCCGTCGa                                                                                                                                                      <  2:789330/261‑1 (MQ=9)
                                                                                                                                           cctccaTTGCCGCTGCCAAAGCGCGGAAGCTGG‑AACATCATCAGGCCACTGCGGACACAGAAGATCAGGACGATCCACGGAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGc                                                                                                                                                   <  1:413705/284‑1 (MQ=14)
                                                                                                                                            cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAATCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAg                                                                                                                                                    <  1:1088413/287‑1 (MQ=255)
                                                                                                                                              cTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAgg                                                                                                                                                                               <  1:740635/258‑1 (MQ=255)
                                                                                                                                                     ccGCGCCAAAGCGCGCAAGCTGG‑AACAGCAACGGCCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa                                                                                                                                         <  1:584852/289‑1 (MQ=255)
                                                                                                                                                     cagagacAAAGCGCCCAGACGGG‑AACGGGAACAGGTAAAGGCGGTACAAGACGAGCAGGACGATCCGGGCAAAGCAGCCGTCGAAGCC‑GCGATGGCCCGTGCCAAAGCGGGCAAGCGGGAA‑CGGCAACAGGCTAATGCGGT‑ACCAGAG‑GAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCa                                                                                                                                         <  2:881372/283‑1 (MQ=11)
                                                                                                                                                       gtgcaaaggcaggtaaGATGG‑AACAGAAACAGGCTAAGGCGCAGCCAGAACATGCGTGCGAACCGCGAAAAGCGGCCAAGGGAGCG‑GCTATTGCCCGTGCCAAAGCGCGCAAACGGGAA‑CAGCAACCGGCTAATGCGGA‑GCCAGAA‑GAACAGGTTGATCCGCGAAAAGCGGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcg                                                                                                                                       <  2:481075/275‑1 (MQ=11)
                                                                                                                                                        tGCCAAAGCACGCAAGCTGG‑AACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGAGCCAAAGCGCGCAAACGGGAA‑CAGCAACCGGCTAATGCGGA‑GCCAGAA‑GAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCCAACGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCGATGGCAcgc                                                                                                                                      >  1:481075/1‑289 (MQ=11)
                                                                                                                                                                cgcgcAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGCACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCCAAg                                                                                                                               >  1:299753/1‑288 (MQ=255)
                                                                                                                                                                  cgcAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGCCGAAGCGGCTCTTGCAcctgtctcttaga                                                                                                                            >  1:423954/1‑277 (MQ=255)
                                                                                                                                                                    cAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCCCGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCACTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg                                                                                                                           <  1:195662/288‑1 (MQ=255)
                                                                                                                                                                     gaagcgagaaaaacAACAGGCTAATGCGGCACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTACCCGTGCAAAAGCACGCAAGCTGGAA‑CAGCAACAGGGTACTGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg                                                                                                                           <  1:1061177/275‑1 (MQ=17)
                                                                                                                                                                     aaaaggg‑AACAGCAACCGGCGAATGCGGAACCCACAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GGTATGGCCCGTGCCAAAGCACGCCAGCGGGAA‑CAGCAACAGGCTAATTCCGA‑GCAAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg                                                                                                                           <  2:914339/282‑1 (MQ=17)
                                                                                                                                                                             aaCAGCAACAGGCTACTACGGAGCCAGAAAACCAGGATGACCCGCGCAAAGCCGCCGTCGAAGCC‑GCTCTGGCCCGGGCCAAAGCACGAAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg                                                                                                                   <  1:887850/288‑1 (MQ=17)
                                                                                                                                                                                 gCAACAGGCCAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCACAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑ACCCGGA‑CAACAGGTCGCACCGCGCAAAGCCGCAGATGAAGCCGCTATTGACCGCGCCAAGGCGCGAAAACGGGAACAGCCACTGGCCAACGCGCAGCCAAAAGAACAGGATGATCCGTGCAAAGCTGCCGTCAAACCGGCCAATCACCGCGCGAACGCACGCAGCCCGGAACAg                                                                                                              >  2:503919/1‑289 (MQ=14)
                                                                                                                                                                                  cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCGCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACCGGTTGATACGCGTAAAGCTGCCGTCCAAGCGGCTATTGCACGCGCCAAAGCAGGCAAGCTGGAACAGc                                                                                                             >  1:444602/1‑289 (MQ=255)
                                                                                                                                                                                  cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCcg                                                                                                                                                                                                                                                                       >  1:651999/1‑135 (MQ=255)
                                                                                                                                                                                  cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCcg                                                                                                                                                                                                                                                                       <  2:651999/135‑1 (MQ=255)
                                                                                                                                                                                   aaCAGGCAAATGAGGAACCAGAAGCACTGGTTGATCCGCGTAAAGCGGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GGCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGGCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa                                                                                                            <  1:109888/289‑1 (MQ=255)
                                                                                                                                                                                    aCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGCGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCACGCAAACGGGAACAGCAGCAGGCTCATGCGGAGCCCGAAACACAAGTTGATCTGCGCAACGCTGCCCTCGAAGCGGCTACTGCACACGCCAACGAACGCCAGccataaaagca                                                                                                            >  2:840687/1‑278 (MQ=14)
                                                                                                                                                                                     acatgtcagttctagccAGATGCACAGGTCGATCCGCGAAAAACCGTCGTCGAACCCGGGCATAGCCTGTG‑CAAAGAAGGCAAGAGGGAC‑AAACAAGCGGCTGATGACGG‑GCCAAAT‑ACACGGGGCAAACCGAGCAAAGCCGCCGGCGAAGCCGCTATTGCCCGGGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGACCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCaa                                                                                                           <  2:330478/273‑1 (MQ=255)
                                                                                                                                                                                      aGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa                                                                                                                 >  1:914339/1‑281 (MQ=255)
                                                                                                                                                                                            aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACa                                                                                                                                                                                 >  1:768010/1‑211 (MQ=255)
                                                                                                                                                                                            aTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCACCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAACGCACGCAAGCTGGAACAGCAACAGGCTaa                                                                                                   >  1:1022086/1‑289 (MQ=255)
                                                                                                                                                                                                tgAACCAGAAGACAAGGCCGACCCTGGCGAAGCCGCCGGCAAAGCC‑GCTATTGCCCGTGCAAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCAA‑GCCAGAA‑CAACAGTTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCg                                                                                               <  1:672220/288‑1 (MQ=17)
                                                                                                                                                                                                  aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCCAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGCACAGCAACAGGCTATTGCCGAGCCAGAAGAAACGGTTGATCCGCCCAAAGCCGCCCTCTACGCGGCCATTGACCCAGCCGAAGCACGCAAACTGGCACAGCaccgcaccaatcggc                                                                                              >  2:351961/1‑274 (MQ=14)
                                                                                                                                                                                                  aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGACAGAAGAACAGGTTGATCCGCGCAACGAGCCCGTCAAAGCGGCCATCGCACGCGACCAAGCCCGCAAGACGGAACAGCGACAgcgcaatgaggt                                                                                             >  2:565909/1‑278 (MQ=17)
                                                                                                                                                                                                  aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGCGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAACCCCGCAAAAGGAAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGCATGATCCGCGCCAAGCGGCCGCTCACGCAGATCTTACACGCCCCAAAGCAACCAAGCTGGAACAGCGACAGGCTaacgggtg                                                                                             >  2:434251/1‑283 (MQ=17)
                                                                                                                                                                                                   aCCAGAAGATCAGGTTCATCCGGGCAAAGCCGCCGTTGAAGCC‑GCGATAGCCCGGGCCAAAGCACCCAAGCTGGAA‑CAGCAACAGGCTAATGCCGG‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt                                                                                             <  1:955600/288‑1 (MQ=17)
                                                                                                                                                                                                       caagaaCAGGTCGATCCACGGAAAGCCGCCGTCGAAGCC‑GCTAATGCCCGTGCAAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCag                                                                                        <  1:711130/288‑1 (MQ=255)
                                                                                                                                                                                                         agaagaGGTCGATCGGGGAAAAGCCGGCGTCGAAGGC‑GCTATGTCCCGTGACAAAGCAAGCAAACGGGAA‑CAGCAACAGGCTAATGCCGA‑GCAAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGACAAAGCACGCAAACGGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCAAAAGCACGCAAGCTGGAACAACAACAGGCTAATGCGGTACCag                                                                                        <  1:208674/287‑1 (MQ=17)
                                                                                                                                                                                                            aCAGGTCGATCCGCGCGAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGACCAGGTTGATCCGCGCAAAGCCGCCCTCGAAGCGGCCATTGCCCCAGCCAAAGCCCGCAAGCTGGAACAACAACAGGCTAATGGGGTACCcgaagac                                                                                   >  2:487836/1‑288 (MQ=14)
                                                                                                                                                                                                                acagaccggcgcAAAGCCGCATTCGAAGCG‑GCTATGACCCGTGCCAAAGCACGCAATCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CGACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGACAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGATCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAgg                                                                               <  2:802674/281‑1 (MQ=17)
                                                                                                                                                                                                                  cGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGtt                                                                             <  1:565909/289‑1 (MQ=255)
                                                                                                                                                                                                                     tCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑GAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACCGGTTGATCCGCTCAAAGCTGACGTCGACGCGGCAATTGCAAGGGGCAAAGACAGCACGCCGGAACAGCAACAGGCGAATGCGGAACCAGACGAACAggctcgg                                                                          >  2:711130/1‑284 (MQ=14)
                                                                                                                                                                                                                          gcAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCAAATGCGGAGcc                                                                                                                                                                                          >  2:912902/1‑172 (MQ=255)
                                                                                                                                                                                                                          gcAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGAGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAAAGGTTGAACcgcg                                                                     >  1:678359/1‑289 (MQ=255)
                                                                                                                                                                                                                          gcAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGGGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGcc                                                                                                                                                                                          <  1:912902/172‑1 (MQ=255)
                                                                                                                                                                                                                                   ccgTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCgcgcctgtct                                                              >  1:802674/1‑281 (MQ=255)
                                                                                                                                                                                                                                        gAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGCACAGCAACCGGCTAATGAGGAGCCAGAAGAACAGGTTGATCCGCCCAACGCCGCCGTCGAACCGGCTATTGCACGCACCAAACCAAGCAGACTGGGACCGCAACAGGCTAATGCCGTACCACAAGAAAAGGTTAATACGCGGAAAGCGGCAGttc                                                       >  2:780979/1‑288 (MQ=17)
                                                                                                                                                                                                                                              cgcgagtGCCCGGGCCAAAGCACGCAAGCTGGAA‑CGGCAACAGGCTAATGCGGA‑GCCAGAA‑AAACAGGTCGATCCGCGTAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcg                                                    <  1:164595/281‑1 (MQ=255)
                                                                                                                                                                                                                                                   ttGCACGTGCAAAAGCGCGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAt                                             <  1:840878/289‑1 (MQ=255)
                                                                                                                                                                                                                                                        gaagcgtcagaggtgtataagaaa‑CAGCTACAGGCGAATGCCGG‑GCTAAAA‑CAACAGGTGGGTCCGCGCAAAGGCGCCGGGGAAGCCGCTATGGCCCAAGCGAAAGCAGGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAGCAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc                                         <  2:925516/266‑1 (MQ=18)
                                                                                                                                                                                                                                                        cGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGACGAACAGGTTTATCCGCGCAAAGCGGCCGTTGCCGCGGCTATTGcc                                         >  1:1003361/1‑288 (MQ=255)
                                                                                                                                                                                                                                                          tGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCCCGCGCCAAAGCAAGCAAGCCGGACAAGCAACAGGCTAATGCGGTACCAGAAACACAGGTTAATCCGCCCAAAGCCGCAGGTGACGCGGCTCTTGcccc                                       >  2:762972/1‑287 (MQ=17)
                                                                                                                                                                                                                                                          tGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGc                                                                                                                                          >  1:931666/1‑189 (MQ=255)
                                                                                                                                                                                                                                                          tGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGc                                                                                                                                          <  2:931666/189‑1 (MQ=255)
                                                                                                                                                                                                                                                           gCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc                                      >  1:655475/1‑288 (MQ=255)
                                                                                                                                                                                                                                                             caaaaaaCGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCCGAA‑CACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAGCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGTCAGTTGCCGCGGCTATTGCCCGCGCt                                   <  1:277723/283‑1 (MQ=255)
                                                                                                                                                                                                                                                             cAAAGCCAGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCt                                   <  1:185736/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             acagacccacAAGCGGGAA‑CAGAAACAGGTTAATGACGA‑GCCAGGA‑CAACAGACGGATCAGCGAAAAGCCGCCGTCGAAGCAGCGATTGCCCGAGCCAAAGCGCGCAAACTGGAACAGCAACCGGCTAAGGCGGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCt                                   <  2:987805/280‑1 (MQ=17)
                                                                                                                                                                                                                                                                    cGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCCATCAGGCCa                            >  1:417533/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     gCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACCGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAACCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAAGCCaa                           >  1:1079290/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     gCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCCCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaa                           >  1:1056329/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            ggAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCGATTGCCCGCGCTCAGGCCAAAAAAgcc                    >  1:764697/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               accAGCAACAGGCTACTGCCGG‑GCCAGAC‑AAACAGGTCGAACCCCGCAAAGCCGCCGTCGAAGCCGCGATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgccg                   <  2:417533/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                                acggCAACCGGCTACTGCGGG‑GCCAGCA‑GAACAGGTCGAGACGCGCAAAGCCGCCTGCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTGGATCCGCGCAAAGCGGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgccgcc                 <  2:488651/286‑1 (MQ=18)
                                                                                                                                                                                                                                                                                    cAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCcagc             >  1:607323/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                         ggCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc                                                               >  2:655368/1‑234 (MQ=255)
                                                                                                                                                                                                                                                                                         ggCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc                                                               <  1:655368/234‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          gCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgccgcc                 <  1:304608/279‑1 (MQ=255)
                                                                                                                                                                                                                                                                                               tGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg                               >  1:925516/1‑260 (MQ=255)
                                                                                                                                                                                                                                                                                               tGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCATAAAATGCCGCCCAGAAGAAGGTTGTa  >  1:116110/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                               
ACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAA‑GCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGG‑AACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCC‑GCTATTGCCCGTGCCAAAGCACGCAAGCTGGAA‑CAGCAACAGGCTAATGCCGA‑GCCAGAA‑CAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTA  >  NC_000913/1708558‑1709129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A