Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F166 I1 R1	27	92.7	1999278	95.2%	1903312	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	1,105,994	T→C	T12T (ACT→ACC)	pdhD →	dihydrolipoyl dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,105,994	0	T	C	97.8%	293.7 / NA	90	T12T (ACT→ACC)	pdhD	dihydrolipoyl dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (1/0); major base C (42/45); minor base A (2/0); total (45/45)
Fisher's exact test for biased strand distribution p-value = 2.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

TGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCATT  >  CP000730/1105859‑1106131

tGACCACAGACAAATTGATTGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGt                                                                                                                                      <  1:7989/141‑1 (MQ=255)

  cccACATACAAAGTGATTGTGCACGTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTaa                                                                                                                                    <  2:722254/140‑1 (MQ=255)

  cccACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAACCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTaa                                                                                                                                    <  2:908929/140‑1 (MQ=255)

  aCCACAGAGAAAGTGATGGGGCAACTGGCCAAAATGCAAGGAATCAGATTAAGCGTGTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTGGGAGATTTCCCAATTGAAACAGATACCATAGTaa                                                                                                                                    <  2:779216/141‑1 (MQ=255)

  aCCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGACTCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAAGGGAGGGGTAAAACATGGTAGTTGGAGAATTCCCAATTGAAACAGATACTATAGTaa                                                                                                                                    >  2:354909/1‑141 (MQ=255)

   ccACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAAt                                                                                                                                   >  1:939588/1‑141 (MQ=255)

     acaGGCAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                                 <  2:897020/141‑1 (MQ=255)

     acaGACAAATTGATGGTGCCACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                                 <  1:30759/141‑1 (MQ=255)

     acaGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                                 <  2:124744/141‑1 (MQ=255)

     acaGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                                 <  1:501211/141‑1 (MQ=255)

     acaGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                                 <  1:342633/141‑1 (MQ=255)

     acaGACAAATTGATGGTGCAACTGGCCAAAATGAAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                                 <  1:457110/141‑1 (MQ=255)

        gacaaaaaaaTGGTGCAACTAGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATGCAGAATTATTATCAATGGAGCGGTGCAACAAAGTAGTTGAAGATATCCCAATTGAAACAGATCCAATAAAAAACGGaa                                                                                                                              >  2:772923/10‑140 (MQ=255)

        gACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAg                                                                                                                              >  2:997936/1‑141 (MQ=255)

        gACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAg                                                                                                                              >  2:870695/1‑141 (MQ=255)

         aCAAATTGATGGGGCAACTGGCCAAAATGCAATGAATCACAAAAACCGTTTAATAAATAATCTAGAATTAATAATAATGGAGGGGTAAAACATGGGAGTTTGATATTTCCCAATTTAAACAGATACCATAGTAATCGGAGc                                                                                                                             <  2:195891/141‑1 (MQ=255)

            aaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAgg                                                                                                                          >  1:404826/1‑141 (MQ=255)

            aaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAgg                                                                                                                          >  1:72054/1‑141 (MQ=255)

            aaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAgg                                                                                                                          <  1:794465/141‑1 (MQ=255)

            aaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAgg                                                                                                                          <  2:865988/141‑1 (MQ=255)

            aaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAgg                                                                                                                          >  1:752377/1‑141 (MQ=255)

            aaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAgg                                                                                                                          <  1:967264/141‑1 (MQ=255)

            aaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAgg                                                                                                                          >  1:752511/1‑141 (MQ=255)

             aTTGATGGTGCAACTGGCCAAAATGCAATGAGTCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGt                                                                                                                         <  1:131317/141‑1 (MQ=255)

             aTTGATGGTGCAACTGGCCAAAATGCAATGAATCACCTTAAACGTTTGTTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGt                                                                                                                         <  1:183179/141‑1 (MQ=255)

                     tGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtggtgg                                                                                                                 >  1:55802/1‑141 (MQ=255)

                     tGCAACTGGCCAAAATGAAATGTTTGACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGGGCAGGACCgggtgg                                                                                                                 >  2:961789/1‑141 (MQ=255)

                                aaaaTGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTgcag                                                                                                      >  1:289064/1‑141 (MQ=255)

                                   aTGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGTAGCaa                                                                                                   >  1:822177/1‑141 (MQ=255)

                                      cAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCACAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTc                                                                                                <  2:418809/141‑1 (MQ=255)

                                        aTGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGt                                                                                              >  1:364509/1‑141 (MQ=255)

                                        aTGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGt                                                                                              >  1:527660/1‑141 (MQ=255)

                                         ttaaTCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCTAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTg                                                                                             <  2:194353/139‑1 (MQ=255)

                                         tGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTg                                                                                             <  2:300674/141‑1 (MQ=255)

                                            aTCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAg                                                                                          <  1:815322/141‑1 (MQ=255)

                                                   ttaaCGTTTATTAAATTATCCATTATTATTATTAATGGAGGGGTAAAATATGGTAGCTGGAGCTTTCCCAATTGAAACAGATACCATAGTAATTGGATCAGGTCCTGGTGGATACGTTTCAGCAATTCGTGCTGCTCAAtt                                                                                   <  2:246814/139‑1 (MQ=255)

                                                   tacacctttAATAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGAAAAAAAAAAAAAACAAATTGAAACAGATACCATAGTAATCGCAGCAGACCCTGGTTGATACGTTGCAGCATTTTCTGCAggaaaaaa                                                                                   <  2:860036/135‑8 (MQ=255)

                                                   tAAACGTTAATGAACTAATCCAGAATTCGTACTAATTGGTGGGTAAAACAGTGGAGTTGGATATTTCCCAATTGAAACAGATACCATAGTAATCGGAGTAGGTCCTGGTGGATACGTTCCAGCAATTCGTGCAGCTCAAtt                                                                                   <  2:22143/141‑1 (MQ=255)

                                                      aCGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAgg                                                                                <  1:754796/141‑1 (MQ=255)

                                                      aCGTTTATTAAATAATCCAGAAATATAATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCACCGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGTAGCTCAATTAgg                                                                                <  1:188717/141‑1 (MQ=255)

                                                      aCGTTTATTAAATAATCCAAAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAgg                                                                                <  1:797872/141‑1 (MQ=255)

                                                          ttattaAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCTATTAGGaaaa                                                                            >  1:185511/1‑141 (MQ=255)

                                                             ttaAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCATGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACaaaaa                                                                         >  2:795013/1‑141 (MQ=255)

                                                              taAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAg                                                                        >  2:905772/1‑141 (MQ=255)

                                                                aataatCCAGAATTAGTATTAAGGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAACCAGCTACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTa                                                                      <  1:167691/141‑1 (MQ=255)

                                                                  tactccatatacaatattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGAGACCATAGTAATCGGAGCAGGGCCTGGTGGAGACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAAc                                                                    <  1:278640/127‑1 (MQ=255)

                                                                  taatCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAAc                                                                    <  2:93457/141‑1 (MQ=255)

                                                                   tgaccATAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACa                                                                   <  2:845593/138‑1 (MQ=255)

                                                                   aatCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACa                                                                   <  2:845603/141‑1 (MQ=255)

                                                                    atCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGCGCAGGATCTCTGTTAGACGTTGCAGCACTTCGTGCAGCCCAATTAGGACAGAAAGTAACaa                                                                  >  1:677487/1‑141 (MQ=255)

                                                                    atCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACaa                                                                  >  2:53859/1‑141 (MQ=255)

                                                                    atCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTACTGGTGGATACGTTGCAGCAATTCGTGCAGATCAATTAGGACAAAAAGTAaaaa                                                                  >  2:440849/1‑141 (MQ=255)

                                                                      cgaGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATGTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATc                                                                <  1:45575/139‑1 (MQ=255)

                                                                       cAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTTCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCg                                                               <  1:767950/141‑1 (MQ=255)

                                                                       cAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCg                                                               <  1:142303/141‑1 (MQ=255)

                                                                         gAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGtt                                                             >  2:25518/1‑141 (MQ=255)

                                                                             tattattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGTAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTgaga                                                         <  1:353152/141‑1 (MQ=255)

                                                                             tattatgaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTgaga                                                         <  1:115572/141‑1 (MQ=255)

                                                                              attattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGaa                                                        >  1:803915/1‑141 (MQ=255)

                                                                              attattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGaa                                                        >  2:228393/1‑141 (MQ=255)

                                                                                tattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACCATCGTTGAGAAAg                                                      >  2:380950/1‑141 (MQ=255)

                                                                                tattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAg                                                      >  2:232991/1‑141 (MQ=255)

                                                                                tattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAg                                                      >  2:362797/1‑141 (MQ=255)

                                                                                         gggggTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCtag                                             >  2:781225/2‑139 (MQ=255)

                                                                                         aGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGGAATCTtg                                             >  2:564305/1‑141 (MQ=255)

                                                                                          ggggTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtgg                                            >  2:996575/1‑141 (MQ=255)

                                                                                             gTAAAACATGGTAGTTGGATATTTCCCAGTTGAAACAGATACAATAGTAATCGTAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTGAGTTAGGAAAAAAACTAACACTCGTTGGGAAGGGTCAACTtggcag                                         >  2:37239/1‑138 (MQ=255)

                                                                                             gTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATAAGTTCATACAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtggtgg                                         >  1:723829/1‑141 (MQ=255)

                                                                                             gTAAAACAGGGTAGTTGGCGATTTCCCAATTGAAACAGATACCATAGTAAGCGGAGCAGGTGCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTATCAATCGTTGAGAAAGGTAATCTtggtgg                                         <  1:641099/141‑1 (MQ=255)

                                                                                              tAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTggtggt                                        >  2:427353/1‑141 (MQ=255)

                                                                                                aaaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGgtgt                                      >  2:494586/1‑141 (MQ=255)

                                                                                                aaaCATGGTAGTTGGAAATATCCCACTTGAAACAGATACCATACTACTCGGAGCAGCTCTCTGTGAATACGTGGCAGCAATTCGTGCAGCACAATTAGGAAAAAAAGTAACAATCGTTGAGAAAGGTAAACTaggcagttt                                      >  2:249510/1‑135 (MQ=255)

                                                                                                     tGGTTGTTGGAGTTTTCCCCATTGAAACGGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCt                                 <  1:467123/141‑1 (MQ=255)

                                                                                                     cggTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCt                                 <  1:32659/140‑1 (MQ=255)

                                                                                                      ggTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAAGCTTGGTTATGTTTGCtt                                >  2:348964/1‑141 (MQ=255)

                                                                                                      ggTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATAAGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAACCCTTGCGAAAGGTACTCTCGGCGGTGTTTGcgt                                >  2:136609/1‑139 (MQ=255)

                                                                                                      ggTAGGGGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCACTTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCtt                                >  2:482107/1‑141 (MQ=255)

                                                                                                        tAGTTGGAGATGTCCTAATTTAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTaa                              <  1:74533/141‑1 (MQ=255)

                                                                                                         aGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGGAGGGCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTaaa                             >  2:702679/1‑141 (MQ=255)

                                                                                                         aGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTaaa                             >  2:849596/1‑141 (MQ=255)

                                                                                                               agaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAgg                       >  1:403675/1‑141 (MQ=255)

                                                                                                               agaTTTCCCAATTGAAACAGATACCAAAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAgg                       >  2:615894/1‑141 (MQ=255)

                                                                                                                gaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACATTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGa                      >  1:660834/1‑141 (MQ=255)

                                                                                                                 aTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGAt                     <  1:363929/141‑1 (MQ=255)

                                                                                                                 aTTTCCCAATTGAAACAGATACCAGGGGAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGAt                     <  2:100783/141‑1 (MQ=255)

                                                                                                                            gAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTTCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCa          >  1:500574/1‑141 (MQ=255)

                                                                                                                             aaaCAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCaa         >  1:779045/1‑141 (MQ=255)

                                                                                                                               aCAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAAGCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCaaaa       <  2:527660/141‑1 (MQ=255)

                                                                                                                               aCAGATACCAAAGTAATCAGAGCAGGGCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCaaaa       <  2:364509/141‑1 (MQ=255)

                                                                                                                                    tACCATAGTAAACTTAGCAAGTCAGGGTTGATACGTTGCAGTAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCAtt  <  2:11751/141‑1 (MQ=255)

TGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCATT  >  CP000730/1105859‑1106131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A