Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A21 F63 I1 R1	22	62.8	1386043	93.6%	1297336	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	1,105,994	T→C	T12T (ACT→ACC)	pdhD →	dihydrolipoyl dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,105,994	0	T	C	98.4%	215.7 / NA	64	T12T (ACT→ACC)	pdhD	dihydrolipoyl dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (34/29); total (35/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTC  >  CP000730/1105862‑1106122

ccACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAAt                                                                                                                           <  1:479114/141‑1 (MQ=255)

       cAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCa                                                                                                                    <  1:541577/141‑1 (MQ=255)

              aTGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtg                                                                                                             >  1:625098/1‑141 (MQ=255)

                  tGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtggtgg                                                                                                         <  1:1026108/141‑1 (MQ=255)

                   gCAACTGGCCAAAATGCAATGACTGAGGAGAAATGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGa                                                                                                        >  1:329084/1‑141 (MQ=255)

                   gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGGGCAGGTCCTGGTGGa                                                                                                        >  1:18741/1‑141 (MQ=255)

                   gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGa                                                                                                        >  1:1053480/1‑141 (MQ=255)

                   gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGa                                                                                                        >  1:1315561/1‑141 (MQ=255)

                          gCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGCTCCCATAGTGATCGGTGCAGGTCCTGGTGGATACGTTg                                                                                                 >  1:179592/1‑141 (MQ=255)

                          gCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTg                                                                                                 >  1:741184/1‑141 (MQ=255)

                          gCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTg                                                                                                 >  1:621828/1‑141 (MQ=255)

                          gCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTg                                                                                                 >  1:348627/1‑141 (MQ=255)

                             aaaaTGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTgcag                                                                                              <  1:1241784/141‑1 (MQ=255)

                                   cAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AAttg                                                                                       >  1:1035866/1‑140 (MQ=255)

                                   cAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTGTCCAAGTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTc                                                                                       >  1:1002120/1‑141 (MQ=255)

                                   cAATGAATCACATTAAACGTTTACTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTc                                                                                       >  1:1033462/1‑141 (MQ=255)

                                     aTGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGt                                                                                     >  1:1140357/1‑141 (MQ=255)

                                         aTCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAg                                                                                 <  1:821091/141‑1 (MQ=255)

                                           cacaTTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGGGATTTCCCAATTGAAACAGATACCATAGCAGTCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCt                                                                               >  1:33387/1‑141 (MQ=255)

                                           cacaTTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCt                                                                               >  1:898391/1‑141 (MQ=255)

                                           cacaTTAAACGTTTATGAAGTAATCCAGAATTATTATTGATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGAGACCATAGTAATCGGAGCTGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCt                                                                               >  1:767120/1‑141 (MQ=255)

                                                   aCGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTTGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAgg                                                                       >  1:1239511/1‑141 (MQ=255)

                                                   aCGTTTATTAAATAAGCCAGAATTAGTCTTGAGGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTTAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGCTACGTTGCAGC‑AATTCGTGCGGCTCTGTTAgg                                                                       >  1:687451/1‑141 (MQ=255)

                                                        tattaAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACaaa                                                                  >  1:1174822/1‑141 (MQ=255)

                                                        tattaAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACaaa                                                                  >  1:1084128/1‑141 (MQ=255)

                                                        tattaAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACaaa                                                                  >  1:1174947/1‑141 (MQ=255)

                                                           taAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAg                                                               <  1:1335375/141‑1 (MQ=255)

                                                           taAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAg                                                               <  1:565089/141‑1 (MQ=255)

                                                               taatCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAAc                                                           <  1:69256/141‑1 (MQ=255)

                                                               taatCCAGAATCATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGCTACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAAc                                                           <  1:321446/141‑1 (MQ=255)

                                                                   tcAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGTAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATc                                                       <  1:507962/140‑1 (MQ=255)

                                                                      gAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCCGC‑AATTCGTGCAGCTCACCTAGGGCAAGAAGTAACAATCGtt                                                    >  1:123282/1‑141 (MQ=255)

                                                                      gAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGtt                                                    >  1:77627/1‑141 (MQ=255)

                                                                          tgttattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGCACACGTGGCAGCTCCTAAGTG‑GTTTCAATTATGACAAAAAGTAACCCTCGTTgaga                                                <  1:1008671/139‑1 (MQ=255)

                                                                          tattattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTgaga                                                <  1:1065550/141‑1 (MQ=255)

                                                                             tattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAg                                             <  1:1308852/141‑1 (MQ=255)

                                                                             tattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAg                                             <  1:1324376/141‑1 (MQ=255)

                                                                                          gTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtggtgg                                >  1:287260/1‑141 (MQ=255)

                                                                                           tAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCATC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCCTggtggt                               <  1:866145/141‑1 (MQ=255)

                                                                                           tAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCTTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTggtggt                               <  1:457156/141‑1 (MQ=255)

                                                                                           tAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTggtggt                               <  1:53693/141‑1 (MQ=255)

                                                                                           tAAAACATGGGAGTTGGAGATGTCCCAATTGAAACAGATACCATAGCATACGGAGCAGGTCCTGGAGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTggtggt                               <  1:1214836/141‑1 (MQ=255)

                                                                                              aaCATGGTAGTTGGAGATTTCCCAATTGAACCAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGtt                            <  1:251483/141‑1 (MQ=255)

                                                                                              aaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGtt                            <  1:1276383/141‑1 (MQ=255)

                                                                                                 aTGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGc                         <  1:1058893/141‑1 (MQ=255)

                                                                                                       gTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAAc                   <  1:813994/141‑1 (MQ=255)

                                                                                                       gTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAAc                   <  1:504276/141‑1 (MQ=255)

                                                                                                       gTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAAc                   <  1:1338588/141‑1 (MQ=255)

                                                                                                       gTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTACAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAAc                   <  1:927037/141‑1 (MQ=255)

                                                                                                            agaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAgg              >  1:767337/1‑141 (MQ=255)

                                                                                                            agaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAgg              >  1:554845/1‑141 (MQ=255)

                                                                                                            agaTTTCCCAATTGAAACAGATACCATAGTAATCGGAAAAGAAACTGATGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCCTGGTGGTGTTTGCTTCAACGTAgg              >  1:1160986/1‑141 (MQ=255)

                                                                                                               tttCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAAGCTTGGTGGTGTTTGCTTAAACGTAGGATg           >  1:1096312/1‑141 (MQ=255)

                                                                                                               tttCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTGGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATg           >  1:1238187/1‑141 (MQ=255)

                                                                                                                 tCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTGAACGTAGGATGTa         >  1:458867/1‑141 (MQ=255)

                                                                                                                 tCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTa         >  1:1286010/1‑141 (MQ=255)

                                                                                                                 tCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTa         >  1:882785/1‑141 (MQ=255)

                                                                                                                 tCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGAATGTa         >  1:780598/1‑141 (MQ=255)

                                                                                                                   ccAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTTACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTAtt       <  1:919238/141‑1 (MQ=255)

                                                                                                                    cAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGCTACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTc      <  1:105632/141‑1 (MQ=255)

                                                                                                                    cAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTc      <  1:950503/141‑1 (MQ=255)

                                                                                                                    cAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTc      <  1:813028/141‑1 (MQ=255)

                                                                                                                        tGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTc  >  1:1307349/1‑141 (MQ=255)

                                                                                                                        tGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTc  >  1:821033/1‑141 (MQ=255)

CCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGC‑AATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTC  >  CP000730/1105862‑1106122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A