Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F108 I1 R1
|
14 |
112.8 |
3657430 |
96.2% |
3518447 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,188,513 |
G→T |
G1055V (GGT→GTT) |
rpoC → |
RNA polymerase, beta prime subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,188,513 | 0 | G | T | 98.1%
| 321.2
/ NA
| 106 | G1055V (GGT→GTT) | rpoC | RNA polymerase, beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (54/49); total (56/50) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 111 total aligned reads displayed.
GCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGT > NC_000913/4188366‑4188658
|
gCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGCCGGCCAGACCATTACGCGTCAGACCGCCGAACTGACCGgt > 2:734305/1‑149 (MQ=255)
cGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGttc > 1:1429501/1‑149 (MQ=255)
cGATGGCGAACAGGTTGCTGGCGGAGAAACCGTTGAAAACTGGGAAACGCACACCATGCCGGTTATCACCGAAGTAAGCTGTTTTGTACGCTTTACTTACATGATAGACGGACAGACAATTACGAGTAAGACCGACGAACTGACCGttc > 2:652376/1‑149 (MQ=255)
gATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGttct < 1:556799/149‑1 (MQ=255)
ggCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGGTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGttctgtc < 1:1378685/149‑1 (MQ=255)
aGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCtg < 1:888275/149‑1 (MQ=255)
aGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCtg < 2:1450975/149‑1 (MQ=255)
tGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTc < 1:374360/149‑1 (MQ=255)
ggcgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGa < 1:1356682/149‑1 (MQ=255)
gcgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGAt > 1:1142728/1‑149 (MQ=255)
cgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGAtt > 2:813053/1‑149 (MQ=255)
taaaCCGTTGCAAACTTGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTc < 2:713956/148‑1 (MQ=255)
aaaCCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTcc < 1:864291/149‑1 (MQ=255)
aCCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGc < 1:5976/149‑1 (MQ=255)
ttGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGaa < 1:707156/149‑1 (MQ=255)
ttGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGaa > 1:1674925/1‑149 (MQ=255)
cAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTTACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGt < 2:527329/149‑1 (MQ=255)
cAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGt > 1:1675278/1‑149 (MQ=255)
aaaCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTa > 1:1648147/1‑149 (MQ=255)
aaaCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTa > 1:1033096/1‑149 (MQ=255)
aaaCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCACAACGTa < 2:1790093/149‑1 (MQ=255)
cTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCg < 1:404152/149‑1 (MQ=255)
cTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGGCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCg < 2:770362/149‑1 (MQ=255)
tGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTATTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGc < 2:1371322/149‑1 (MQ=255)
tGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGc < 2:767103/149‑1 (MQ=255)
tGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGc < 1:1010439/149‑1 (MQ=255)
gggACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCa < 2:930920/149‑1 (MQ=255)
ggACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCAGCAGAACGTACCGCAg > 2:187383/1‑149 (MQ=255)
acacCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACTCTTTAGTGACTTGATCGACGGCCAGACCATTACTCGTCCGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGAGTCCGCAGAACGTACCGCAGGTGGTaaa < 1:602204/149‑1 (MQ=255)
acacCATGCCGGTAATCACCGAAGTAAGCGGGTTTGTACGCTTTACTGACATGATCGACGGCGAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTaaa < 1:152062/149‑1 (MQ=255)
acCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGa < 1:1546745/149‑1 (MQ=255)
aTGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGACCGTACCGCAGGTGGTAAAGATCt > 2:458370/1‑149 (MQ=255)
aTGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCt > 2:1463030/1‑149 (MQ=255)
aTGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCt < 2:1052849/149‑1 (MQ=255)
aTGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCt > 2:799306/1‑149 (MQ=255)
aTGCCGGTTAGCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCt < 1:794964/149‑1 (MQ=255)
aTGCCGGGTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATAACGCTTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTTGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCt < 2:1282868/149‑1 (MQ=255)
ggTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGCCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTc > 2:1143757/1‑149 (MQ=255)
ggTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTc < 2:402813/149‑1 (MQ=255)
tATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGCCGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCgg > 2:348340/1‑149 (MQ=255)
tCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCa > 2:888382/1‑149 (MQ=255)
ccGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTg > 2:471218/1‑149 (MQ=255)
ccGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTg > 2:328780/1‑149 (MQ=255)
cagAAGTATGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCTGAACGTACCGCAGGTGGTAATGATCTGCGTCCGGCACTg < 1:809845/147‑1 (MQ=255)
cGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGa > 2:1191646/1‑149 (MQ=255)
tAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATc < 2:543349/149‑1 (MQ=255)
aGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGt < 2:1540129/149‑1 (MQ=255)
aGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGt > 1:1644186/1‑149 (MQ=255)
aGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGt > 2:833606/1‑149 (MQ=255)
gCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGtt < 1:69597/149‑1 (MQ=255)
cGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTg > 1:670185/1‑149 (MQ=255)
ttttGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGCCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATg > 2:1466343/1‑149 (MQ=255)
tGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTc < 2:1033096/149‑1 (MQ=255)
gTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCa < 2:1797632/149‑1 (MQ=255)
tACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGACCTGCCCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGCTGCGCAg > 2:1412177/1‑149 (MQ=255)
aCGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAgg > 1:431798/1‑149 (MQ=255)
gCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGt < 2:1088140/149‑1 (MQ=255)
gCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGt > 1:654898/1‑149 (MQ=255)
gCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGt > 2:584154/1‑149 (MQ=255)
gCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGATGATGCTCAGGGt > 1:436740/1‑149 (MQ=255)
tACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAacg > 2:1409493/1‑149 (MQ=255)
tGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAacgacg > 2:1381493/1‑149 (MQ=255)
aCATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGtt > 1:376428/1‑149 (MQ=255)
aCATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCAGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGtt > 2:1323395/1‑149 (MQ=255)
aTGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGCCGTTCt > 2:813907/1‑149 (MQ=255)
aTGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCt < 1:1223592/149‑1 (MQ=255)
aTGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCt > 2:1792452/1‑149 (MQ=255)
aTGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATAACGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGCCGATCt > 2:600216/1‑149 (MQ=255)
aacGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCATCGCTGGTGGTTCTGCATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGAt > 1:902124/3‑149 (MQ=255)
aTCGCCGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGGGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGAt > 1:944588/1‑149 (MQ=255)
aTCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGACACTGAAAATCGTTGATGCTCAGGGTACCGACGTGCTGAt > 1:1033680/1‑149 (MQ=255)
tCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAACGATCTGCGTCCGGCACTGAAAATCGTTGCTGCTCAGGGTAACGACGTTCTGATc > 1:1620003/1‑149 (MQ=255)
ccAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGCTGCTCAGGGTAACGACGTTCTGATCCCAGGTa > 1:803349/1‑149 (MQ=255)
cAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTGTGGATTCCGCAGAACGTACCGCAGGTGGTAATGAGCTGCGGCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAc < 2:1762269/149‑1 (MQ=255)
cAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGGGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAc < 2:1068511/149‑1 (MQ=255)
aGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCTCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGATCAGGGTACCGACGTTCTGCTCCCAGGTAcc > 2:1769841/1‑149 (MQ=255)
aCCATTACGCGTCAGACCGACGAACTGCCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACAGCAGGTGGTAAAGATCTGCGTCCGGCACTGATAATCGTTGATGCTCAGGGTAACGCCGTTCTGATCCCAGGTACCGa > 2:449551/1‑149 (MQ=255)
ccATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGat < 1:390322/149‑1 (MQ=255)
ccATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGGGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGat < 1:988998/149‑1 (MQ=255)
cATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGata > 1:1629719/1‑149 (MQ=255)
cATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGata > 1:845647/1‑149 (MQ=255)
cATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGata > 1:1183995/1‑149 (MQ=255)
ttACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATg > 2:1071731/1‑149 (MQ=255)
tCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAgcgc > 2:1086909/1‑149 (MQ=255)
cAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCa < 1:471218/149‑1 (MQ=255)
cAGACCGAAGAACTGACCGTTCTGTCATCGCTGGTGGTTCTGGATTCCGCAGAACGGACCGCAGGTGGTAAAGATCTGCGTACGTCACTGAAAATCTTTGATGCTCATGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCa < 1:1802691/149‑1 (MQ=255)
gcccGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGGCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGt < 2:1653686/147‑1 (MQ=255)
gACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGt > 1:18806/1‑149 (MQ=255)
gACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGt > 1:71930/1‑149 (MQ=255)
ccGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTAc > 2:905088/1‑149 (MQ=255)
acgaACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTc < 1:174806/149‑1 (MQ=255)
aCTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGACCGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGc > 2:269571/1‑149 (MQ=255)
aCTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGc < 1:584154/149‑1 (MQ=255)
gACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCgg < 2:1463479/149‑1 (MQ=255)
gACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCgg > 2:290324/1‑149 (MQ=255)
gACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGGAAAGAGCTGCGTCCGGCACTGAACATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCgg < 2:1675278/149‑1 (MQ=255)
gACCGTTCTGTCGTCGCTGGGGGTTCTGGATGCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCgg < 2:431039/149‑1 (MQ=255)
aCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCggg > 1:1309117/1‑149 (MQ=255)
aCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCggg < 2:620549/149‑1 (MQ=255)
ccGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGt < 2:72866/149‑1 (MQ=255)
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GCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGT > NC_000913/4188366‑4188658
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
