Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
782,109 |
T→C |
Q167R (CAG→CGG) |
hlyE ← |
hemolysin E |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 782,109 | 0 | T | C | 100.0%
| 115.7
/ NA
| 32 | Q167R (CAG→CGG) | hlyE | hemolysin E |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (5/27); total (5/27) |
GCACCGGCATATGCTTCCTTCCTGATTTTATCTACCTGTGACTGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGCTATCTAACGCCAG > minE/782067‑782164
|
gCACCGGCATATGCTTCCTTCCTGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAAt > 1:1465998/1‑70 (MQ=255)
gCACCGGCATATGCTTCCTTCCTGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAAt > 1:3753136/1‑70 (MQ=255)
gCACCGGCATATGCTTCCTTCCTGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAAt > 1:2239953/1‑70 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGcttctt < 1:4237177/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:2519833/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:3447673/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:3731796/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:3917956/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:4059085/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:2791560/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:2705425/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:435306/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:2054904/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:69064/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:1768687/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:1665912/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:905892/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:111224/46‑1 (MQ=255)
ttccttccTGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:1295665/46‑1 (MQ=255)
tccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCttttt < 1:956004/45‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:3496755/69‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:3240445/69‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:3200195/69‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:3107039/69‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:3982205/69‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:2775373/69‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:623868/69‑1 (MQ=255)
ccttcctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGc < 1:1911415/69‑1 (MQ=255)
cctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGCTATCt < 1:2863818/70‑1 (MQ=255)
cctGATTTTATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGCTATCt < 1:2540150/70‑1 (MQ=255)
ttATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGCTATCTAACGCcag > 1:1578938/1‑71 (MQ=255)
ttATCTACCTGTGACCGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGCTATCTAACGCcag > 1:1349800/1‑71 (MQ=255)
|
GCACCGGCATATGCTTCCTTCCTGATTTTATCTACCTGTGACTGGAAATAGCTGCTTTTTTCTGAAAAATCATTGGTTAACTGGCTATCTAACGCCAG > minE/782067‑782164
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
