Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I1 R1 300 54.7 1718999 98.4% 1691495 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,042,663 A→G R516R (CGT→CGC)  etk ← tyrosine‑protein kinase, role in O‑antigen capsule formation

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,042,6630AG100.0% 213.9 / NA 61R516R (CGT→CGC) etktyrosine‑protein kinase, role in O‑antigen capsule formation
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (34/27);  total (34/27)

TAAATAACACTTTTTGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCACGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTCGGACATTGGGATAGTGGC  >  NC_000913/1042515‑1042809
                                                                                                                                                    |                                                                                                                                                  
taaataaCACTTTTTGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGcgcgcg                                                                                                                                                  >  2:172736/1‑151 (MQ=255)
 aaataaCACTTTTTGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGt                                                                                                                                                 <  1:358820/151‑1 (MQ=255)
    taaCACTTTTTGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACg                                                                                                                                              >  1:786627/1‑151 (MQ=255)
        acTTTTTGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCtt                                                                                                                                          >  2:573170/1‑151 (MQ=255)
        acTTTTTGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCtt                                                                                                                                          >  2:342852/1‑151 (MQ=255)
           ttttGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTc                                                                                                                                         <  2:74770/149‑1 (MQ=255)
                   ggACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGaa                                                                                                                               <  2:279506/151‑1 (MQ=255)
                     aCTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTATCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATc                                                                                                                             >  1:671591/1‑151 (MQ=255)
                       tGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATccg                                                                                                                           >  2:292486/1‑151 (MQ=255)
                          gCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATccgccg                                                                                                                        >  2:706959/1‑151 (MQ=255)
                           cGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCgg                                                                                                                       >  2:795860/1‑151 (MQ=255)
                                 ccGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATc                                                                                                                 >  1:713990/1‑151 (MQ=255)
                                 ccGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATc                                                                                                                 >  2:550573/1‑151 (MQ=255)
                                       ccAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCg                                                                                                            <  2:87214/150‑1 (MQ=255)
                                           agTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAgg                                                                                                       <  2:855956/151‑1 (MQ=255)
                                            gTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCGCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTCCGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAgg                                                                                                       <  1:395879/150‑1 (MQ=255)
                                               gAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAg                                                                                                    <  2:43264/150‑1 (MQ=255)
                                                   tGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGa                                                                                                >  2:190253/1‑150 (MQ=255)
                                                    gACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGat                                                                                               >  1:725963/1‑150 (MQ=255)
                                                        aaCGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGGATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATAtttt                                                                                          <  1:583079/151‑1 (MQ=255)
                                                          cGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATAttttt                                                                                         >  1:173818/1‑150 (MQ=255)
                                                          cGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTa                                                                                        <  1:40213/151‑1 (MQ=255)
                                                             tttACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGt                                                                                      >  1:66857/1‑150 (MQ=255)
                                                               tACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTAc                                                                                    <  1:647849/150‑1 (MQ=255)
                                                                  cACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATg                                                                                >  2:681796/1‑151 (MQ=255)
                                                                  cACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATg                                                                                <  1:18346/151‑1 (MQ=255)
                                                                     tGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGgcg                                                                             >  1:168363/1‑151 (MQ=255)
                                                                      gTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTAGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGgcgc                                                                            >  2:808837/1‑151 (MQ=255)
                                                                          ggCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCgctg                                                                          <  2:249326/149‑1 (MQ=255)
                                                                            cGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGa                                                                      <  1:491944/151‑1 (MQ=255)
                                                                                   ccGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGaaa                                                               <  1:14407/151‑1 (MQ=255)
                                                                                   ccGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGaaa                                                               <  2:640455/151‑1 (MQ=255)
                                                                                       tGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAaaata                                                            >  2:26134/1‑150 (MQ=255)
                                                                                       tGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAaaata                                                            >  1:589786/1‑150 (MQ=255)
                                                                                        gATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAaaataa                                                           >  1:794356/1‑150 (MQ=255)
                                                                                            aTTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAAtttt                                                      <  2:285035/151‑1 (MQ=255)
                                                                                               aGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCt                                                   <  1:319441/151‑1 (MQ=255)
                                                                                               aGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTAGCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCt                                                   <  2:671633/151‑1 (MQ=255)
                                                                                                gAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCtt                                                  >  2:839437/1‑151 (MQ=255)
                                                                                                gAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCtt                                                  >  2:171614/1‑151 (MQ=255)
                                                                                                 aaTGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCtt                                                  >  1:550209/1‑150 (MQ=255)
                                                                                                     ttATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGc                                              >  2:854181/1‑150 (MQ=255)
                                                                                                     ttATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGc                                              <  1:801211/150‑1 (MQ=255)
                                                                                                       aTTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGa                                           <  1:244351/151‑1 (MQ=255)
                                                                                                         tctcCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACg                                         >  1:271732/1‑151 (MQ=255)
                                                                                                            ccGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACggg                                       <  1:99812/150‑1 (MQ=255)
                                                                                                            ccGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACgg                                        <  1:731003/149‑1 (MQ=255)
                                                                                                            ccGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGt                                      <  2:271541/151‑1 (MQ=255)
                                                                                                            ccGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGt                                      >  2:628788/1‑151 (MQ=255)
                                                                                                              gTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGc                                    >  2:471679/1‑151 (MQ=255)
                                                                                                                  ccATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGttt                                >  2:589093/1‑151 (MQ=255)
                                                                                                                  ccATCATAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGtt                                 <  1:173287/150‑1 (MQ=255)
                                                                                                                    atcatAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTAt                              >  1:71531/1‑151 (MQ=255)
                                                                                                                     tcatAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATc                             >  2:362611/1‑151 (MQ=255)
                                                                                                                      catAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATcc                            <  2:446646/151‑1 (MQ=255)
                                                                                                                      catAGCGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATcc                            >  1:405300/1‑151 (MQ=255)
                                                                                                                           cGAAATGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCa                       <  1:553135/151‑1 (MQ=255)
                                                                                                                              aaTGCAGACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTc                    >  1:192037/1‑151 (MQ=255)
                                                                                                                                    gACTGGTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTCGGACAt              <  2:533771/151‑1 (MQ=255)
                                                                                                                                         gTTCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTCGGACATTggg          >  2:282430/1‑150 (MQ=255)
                                                                                                                                          ttCGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTCGGACATTGGGAt        >  1:195355/1‑151 (MQ=255)
                                                                                                                                            cGTAGCGCGCGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTCGGACATTGGGAt        >  2:331860/1‑149 (MQ=255)
                                                                                                                                                gcgcgcGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTCGGACATTGGGATAGTGGc  <  1:287158/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
TAAATAACACTTTTTGATCGGACTGGGCGATCACCGCTGCCAGAGTTGAACTGACAAACGTTTTACCACTGTCTGGCGTCGCACCGGTGATCATTAGAATGTTATTCTCCGTCTCCATCATAGCGAAATGCAGACTGGTTCGTAGCGCACGTACGGCTTCCACAGCAGAATCCGCCGGGTTATCCACCGCCAGGAAGGGGATATTTTTAGTACGATGGCGCTGCTGATTAGAAAATAAATTTTTCTTACGCAGACGGGTGCGTTTATCCAGCCACTCGGACATTGGGATAGTGGC  >  NC_000913/1042515‑1042809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A