Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
300 |
54.7 |
1718999 |
98.4% |
1691495 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,192,714 |
A→G |
C354R (TGC→CGC) |
mnmA ← |
tRNA(Gln,Lys,Glu) U34 2‑thiouridylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,192,714 | 0 | A | G | 100.0%
| 188.5
/ NA
| 54 | C354R (TGC→CGC) | mnmA | tRNA(Gln,Lys,Glu) U34 2‑thiouridylase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (31/23); total (31/23) |
CACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCACACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGATAGCGGGTTTTTACCGTGCAACG > NC_000913/1192566‑1192861
|
cACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGcgca < 1:192110/151‑1 (MQ=255)
aGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTc > 2:351434/1‑151 (MQ=255)
ccGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGtt > 2:122487/1‑150 (MQ=255)
gACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTtata < 1:363071/151‑1 (MQ=255)
gACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTtat > 1:734366/1‑150 (MQ=255)
tGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATaga > 1:157131/1‑150 (MQ=255)
gACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATCCCGCCACCGAGGCGCACTTCACCGTTATagaag < 1:707585/151‑1 (MQ=255)
aCAAATGCCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAAGCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATagaaga < 1:271822/151‑1 (MQ=255)
aTACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGc > 1:315782/1‑151 (MQ=255)
aTACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGc < 2:648715/151‑1 (MQ=255)
ccGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGc > 1:284180/1‑148 (MQ=255)
ggCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACt > 2:90991/1‑151 (MQ=255)
cAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGc > 1:317548/1‑151 (MQ=255)
gggCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGccc > 1:176193/1‑151 (MQ=255)
gggTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTc < 1:137634/151‑1 (MQ=255)
gTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCAcggcgg > 2:402131/1‑151 (MQ=255)
aTAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCAcggc > 2:666882/1‑146 (MQ=255)
ttGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATc > 2:558844/1‑150 (MQ=255)
ttGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATc < 1:350933/150‑1 (MQ=255)
cTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTc > 2:88137/1‑150 (MQ=255)
ttCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGc > 2:593122/1‑151 (MQ=255)
ccTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGa < 2:181248/151‑1 (MQ=255)
cTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGat > 2:470504/1‑151 (MQ=255)
cTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGat > 2:223074/1‑151 (MQ=255)
ttGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGat > 2:264401/1‑150 (MQ=255)
tttAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGatcatc > 1:52057/1‑150 (MQ=255)
tttAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCg > 2:529967/1‑151 (MQ=255)
aaGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTc < 2:67929/150‑1 (MQ=255)
aaaGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATc < 2:254970/119‑1 (MQ=255)
aaaGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATc > 1:254945/1‑119 (MQ=255)
aaaGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAgcg < 1:490430/151‑1 (MQ=255)
gATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCCTCGAAAATCACTTCAATGCGATCATCGTCCAgcgc > 1:467968/1‑149 (MQ=255)
gATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCt > 1:500502/1‑151 (MQ=255)
aataatCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTg < 2:561002/150‑1 (MQ=255)
aatCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACgg < 2:521785/151‑1 (MQ=255)
aatCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACg < 2:705795/150‑1 (MQ=255)
atCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACgg > 2:167020/1‑150 (MQ=255)
atCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACgg > 2:850556/1‑150 (MQ=255)
ccGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAgg < 2:525240/151‑1 (MQ=255)
cggcagcggcagACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAggg > 2:846502/1‑151 (MQ=255)
ggcagcggcagACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAggg > 2:39022/1‑150 (MQ=255)
ggcagACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCgg < 2:317572/151‑1 (MQ=255)
ggcagACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCgg < 1:428397/151‑1 (MQ=255)
gcagACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGt < 1:360726/151‑1 (MQ=255)
gcagACGCTGCTCAATAATACCGCCACCGAGGCGCACTTCAAAGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGATCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGGGCAAGGGATATCgg > 2:153698/1‑150 (MQ=255)
cGCTGCTCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGc < 2:303550/151‑1 (MQ=255)
gctgctCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCg > 1:519248/1‑151 (MQ=255)
ctgctCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCg > 1:376098/1‑150 (MQ=255)
gctCAATAATACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGAt < 1:54004/150‑1 (MQ=255)
aataatACCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGATAGCg < 1:424930/150‑1 (MQ=255)
aataCCGCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGATAGCGGGtt > 1:462909/1‑151 (MQ=255)
gCCACCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGATAGCGGGTTTTTAcc < 1:526307/151‑1 (MQ=255)
aCCGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGATAGCGGGTTTTTACCGTg > 2:192801/1‑151 (MQ=255)
ccGAGGCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCAGCGTCCAGCGCCGTGACGGTGCAAGGGATATCGGGCTGGCGATAGGGGGTTTTTACCg < 1:33712/148‑1 (MQ=255)
ggCGCACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGATAGCGGGTTTTTACCGTGCAACg < 1:90968/151‑1 (MQ=255)
|
CACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCACACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCGATCATCGTCCAGCGCCTTGACGGTGCAAGGGATATCGGTCTGGCGATAGCGGGTTTTTACCGTGCAACG > NC_000913/1192566‑1192861
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
