Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,622,280	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,622,280	0	G	C	99.7%	890.4 / NA	377	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (197/178); total (199/178)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,622,281	0	C	G	99.5%	896.6 / ‑5.9	377	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (197/177); minor base A (1/1); total (199/178)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,622,282	0	T	A	99.2%	897.8 / NA	377	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (197/177); minor base G (2/1); total (199/178)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 377 total aligned reads displayed.

ATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGGCTACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGGCTCCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCACTATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCT  >  CP042583/1622007‑1622556

|||

agcAATAACAGAGTGATTGAGTATAGTGCTTAGCGTATCGACAGTGGACACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCGGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAAcg                                                                                                                                                                                                                                                                        <  2:2533154/287‑1 (MQ=255)

    aTACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGgt                                                                                                                                                                                                                                                                    <  2:2694883/289‑1 (MQ=255)

          tACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑Tc                                                                                                                                                                                                                                                             >  1:2077052/1‑289 (MQ=255)

               aTTGTGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCATAGTAAGAACGGTGAGCGGCCCCAACATAACGGCGTGGGG‑GCGCggg                                                                                                                                                                                                                                                        >  2:2736907/1‑288 (MQ=255)

               aTTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCTAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGt                                                                                                                                                                                                                                                        >  1:661579/1‑289 (MQ=255)

               aTTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGGACGGTGAGCGACCACAAAATAACGAGGTGGGG‑ACggggg                                                                                                                                                                                                                                                        >  2:697346/1‑288 (MQ=255)

               aTTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGt                                                                                                                                                                                                                                                        >  2:1122335/1‑289 (MQ=255)

               aTTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGt                                                                                                                                                                                                                                                        >  2:2466759/1‑289 (MQ=255)

                ttgggaactctgctTAGCGTATCGCCACTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGt                                                                                                                                                                                                                                                        <  2:2322599/279‑1 (MQ=255)

                 tGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATCTTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGAGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAACCCTAAGGCCGCCAGACAGCGACGGCCAGAGCAAGACCGGTGCGCGACCCCAACATAACGCGGGGTGT‑GCGCGGTaa                                                                                                                                                                                                                                                      >  2:307071/1‑289 (MQ=255)

                   agaATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCCATGGTTTGGACAATGGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCTACGGCCAGCGTAAGAACGGTGAGCGAACCCAACAAAACGCGGCTTGG‑TCGCgggcatg                                                                                                                                                                                                                                                    >  2:256436/1‑284 (MQ=255)

                         ctgctTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTaa                                                                                                                                                                                                                                              >  2:1983421/1‑289 (MQ=255)

                            ctTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAAc                                                                                                                                                                                                                                            >  1:1922512/1‑288 (MQ=255)

                            ctTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGAC‑ATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACg                                                                                                                                                                                                                                           >  1:884260/1‑288 (MQ=255)

                               aGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACTGCCAGAGTAAGAACGGTGAACGACCCCAACATAACGCGG‑GTGGCGCGCGGTAAATTATTAAACACCa                                                                                                                                                                                                                                        >  2:1155938/1‑289 (MQ=255)

                                 cGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAgg                                                                                                                                                                                                                                      >  1:819200/1‑289 (MQ=255)

                                     tCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGa                                                                                                                                                                                                                                  <  1:909327/289‑1 (MQ=255)

                                     tCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGa                                                                                                                                                                                                                                  <  2:866228/289‑1 (MQ=255)

                                      cGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAATGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAACTTAGTaacgcccaaggccac                                                                                                                                                                                                                                 >  2:145125/1‑276 (MQ=255)

                                          aGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACagag                                                                                                                                                                                                                             <  2:2637796/289‑1 (MQ=255)

                                           gTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGc                                                                                                                                                                                                                            >  2:1851711/1‑289 (MQ=255)

                                             ggAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCATAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCgg                                                                                                                                                                                                                          <  1:2736907/289‑1 (MQ=255)

                                                aacaacATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCt                                                                                                                                                                                                                       <  1:1155938/289‑1 (MQ=255)

                                                             tGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGt                                                                                                                                                                                                          >  2:3317570/1‑289 (MQ=255)

                                                                   cccGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAggg                                                                                                                                                                                                                                     >  1:1662571/1‑256 (MQ=255)

                                                                    ccGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACt                                                                                                                                                                                                   >  2:3226362/1‑289 (MQ=255)

                                                                     cGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACtt                                                                                                                                                                                                  <  1:1446467/289‑1 (MQ=255)

                                                                        ttCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTcc                                                                                                                                                                                                >  2:1023333/1‑288 (MQ=255)

                                                                                 gATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                       <  2:3159425/288‑1 (MQ=255)

                                                                                 gATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                       <  1:2429831/288‑1 (MQ=255)

                                                                                      tGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCttt                                                                                                                                                                                 <  2:290371/289‑1 (MQ=255)

                                                                                           tCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                            <  1:2466759/289‑1 (MQ=255)

                                                                                           tCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                            <  1:2394723/289‑1 (MQ=255)

                                                                                             cAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAg                                                                                                                                                                          <  2:2077052/289‑1 (MQ=255)

                                                                                                ttCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                            >  2:2170631/1‑284 (MQ=255)

                                                                                                ttCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                            <  1:1347320/284‑1 (MQ=255)

                                                                                                ttCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGAAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAAGCACTTCCTCATTAATCTCCTTTCAGTCACCt                                                                                                                                                                        >  2:1658442/1‑288 (MQ=255)

                                                                                                     ccTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATa                                                                                                                                                                  <  2:2279711/289‑1 (MQ=255)

                                                                                                     ccTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATa                                                                                                                                                                  <  1:1583864/289‑1 (MQ=255)

                                                                                                              tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTTACAATTGGCGTGGCATAACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATGATAAAACGCCAGGGCGGCAGAGGGGGATATCGGTTGGACGGAATCACTACCTCAATACTCTCCCTTCGGGCAGCTCGTCTACTGGTTGGc                                                                                                                                                         >  2:341286/1‑289 (MQ=255)

                                                                                                              tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAAc                                                                                                                                                                                                                                                                              >  1:2903263/1‑173 (MQ=255)

                                                                                                              tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑Tcgcg                                                                                                                                                                                                                                                          >  2:1377216/1‑192 (MQ=255)

                                                                                                              tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACtt                                                                                                                                                                                                  >  2:664656/1‑248 (MQ=255)

                                                                                                              tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                       >  1:3199238/1‑259 (MQ=255)

                                                                                                                      tcttctTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTATTCTCCTTTCAGGCAGCTCGCATACTGGTTTGCTAATTg                                                                                                                                                   >  2:1551492/1‑287 (MQ=255)

                                                                                                                            tgtgCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGc                                                                                                                                                                                                              >  2:279699/1‑222 (MQ=255)

                                                                                                                            tgtgCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGc                                                                                                                                                                                                              <  1:279699/222‑1 (MQ=255)

                                                                                                                              tgCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTa                                                                                                                                                       <  1:2643457/275‑1 (MQ=255)

                                                                                                                                   cTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTg                                                                                                                                                                                                               <  2:494487/214‑1 (MQ=255)

                                                                                                                                   cTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTg                                                                                                                                                                                                               >  1:494487/1‑214 (MQ=255)

                                                                                                                                   cTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTcc                                                                                                                                                                                                >  2:774175/1‑229 (MQ=255)

                                                                                                                                       ttCAATCGTCTGCCTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCGCAATGGTTTTGACGATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAACCAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCAGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaatag                                                                                                                                <  2:2383069/288‑8 (MQ=255)

                                                                                                                                        tCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACagag                                                                                                                                                                                                                             >  2:2836864/1‑195 (MQ=255)

                                                                                                                                                 tCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATa                                                                                                                                                                  <  2:521782/245‑1 (MQ=255)

                                                                                                                                                 tCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATa                                                                                                                                                                  >  1:521782/1‑245 (MQ=255)

                                                                                                                                                  cACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTAcc                                                                                                                     <  1:1114606/289‑1 (MQ=255)

                                                                                                                                                   aCTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGCGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTAccc                                                                                                                    >  1:2599145/1‑289 (MQ=255)

                                                                                                                                                         ttCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctga                                                                                                                                    <  1:456279/267‑4 (MQ=255)

                                                                                                                                                          tCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACagag                                                                                                                                                                                                                             <  2:1435928/177‑1 (MQ=255)

                                                                                                                                                               taagagcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATAtt                                                                                                         <  2:107063/279‑1 (MQ=255)

                                                                                                                                                               taagagcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGGTTTGACAATTGGCGTGGCATCACGGTGATAAACCTAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGatat                                                                                                          <  2:899105/278‑1 (MQ=255)

                                                                                                                                                                aagagcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCg                                                                                                       <  1:307071/281‑1 (MQ=255)

                                                                                                                                                                 agagcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                            >  1:2193678/8‑219 (MQ=255)

                                                                                                                                                                 agagcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTAcc                                                                                                                     >  2:450138/8‑274 (MQ=255)

                                                                                                                                                                   agcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCt                                                                                                                                                                                                                       >  1:2949877/6‑174 (MQ=255)

                                                                                                                                                                       aaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAg                                                                                                >  1:1016795/2‑289 (MQ=255)

                                                                                                                                                                       aaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAg                                                                                                >  1:2542289/2‑289 (MQ=255)

                                                                                                                                                                       aaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGACGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGAACGTAATCACTTCCTCATTAATCTTCTTTCAGGCAGCTCGCATACTGGTTGGCTAAGTGACTCAGGAATTTTGAATCGCTTGTTTTACCCAGTTTGATATTCGTCCCCAg                                                                                                >  1:2707574/2‑289 (MQ=255)

                                                                                                                                                                               tCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCa                                                                                        <  1:1786912/289‑1 (MQ=255)

                                                                                                                                                                                       ttCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAattatt                                                                                                                                                                                                                                                >  2:1179628/1‑129 (MQ=255)

                                                                                                                                                                                              tCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGaa                                                                         <  1:3317570/289‑1 (MQ=255)

                                                                                                                                                                                                 aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCGGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGGGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTGGTTTTACCCAGTTTGATATTCTGCCCCAGGGGATCCACCGTTCCCATACTAACgc                                                                      >  2:1893246/1‑288 (MQ=255)

                                                                                                                                                                                                 aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACg                                                                                                                                                                                                           <  1:227974/156‑1 (MQ=255)

                                                                                                                                                                                                 aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGaa                                                                         <  1:2047468/286‑1 (MQ=255)

                                                                                                                                                                                                 aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACgg                                                                      >  1:384171/1‑289 (MQ=255)

                                                                                                                                                                                                 aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACgg                                                                      >  1:1428240/1‑289 (MQ=255)

                                                                                                                                                                                                 aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCAACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaa                                                                                                                                   <  2:412711/228‑5 (MQ=255)

                                                                                                                                                                                                     ttttGACAGTTAGCGTGGCAACACAGTGATAAACATCAGGCCGCCAGACATCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAGCATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGt                                                                  <  2:2953527/289‑1 (MQ=255)

                                                                                                                                                                                                      tttGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGt                                                                  <  1:2102717/288‑1 (MQ=255)

                                                                                                                                                                                                                                ggtAAACAAAAGGCCGCCAGACAGGGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCg                                        <  2:828453/286‑1 (MQ=255)

                                                                                                                                                                                                                                gATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑t                                                                                                                                                                                                                                                              <  1:769401/74‑1 (MQ=255)

                                                                                                                                                                                                                                 aTAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGgtg                                                                                                                                                                                                                                                                   <  1:1210065/69‑1 (MQ=255)

                                                                                                                                                                                                                                 aTAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGc                                                                                                                                                                         >  2:2031630/1‑158 (MQ=255)

                                                                                                                                                                                                                                 aTAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCa                                                                                                 >  1:680917/1‑230 (MQ=255)

                                                                                                                                                                                                                                 aTAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGAcc                                         >  1:1027602/1‑286 (MQ=255)

                                                                                                                                                                                                                                       aTAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGtt                                                                                                                                                            <  1:1991973/165‑1 (MQ=255)

                                                                                                                                                                                                                                         aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGtt                                                                                                                <  2:641683/207‑1 (MQ=255)

                                                                                                                                                                                                                                         aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCa                                                                                                 <  2:1585240/222‑1 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTa                                                                                                                                                                                                                                                       >  1:42790/1‑70 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCg                                                                                                                                                                                                                                   <  1:600728/90‑1 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                            >  2:1733388/1‑145 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                            <  1:1733388/145‑1 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTa                                                                                                                       <  1:1499661/198‑1 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACg                                                                                     >  1:1869361/1‑232 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGcc                                  >  2:3273949/1‑283 (MQ=255)

                                                                                                                                                                                                                                           ggCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGcc                                  <  1:3273949/283‑1 (MQ=255)

                                                                                                                                                                                                                                              cgccAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTAcc                                                                                                                     <  2:1265788/197‑1 (MQ=255)

                                                                                                                                                                                                                                                 cAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATa                                                                                                                                                                  <  2:942070/149‑1 (MQ=255)

                                                                                                                                                                                                                                                        cGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCCCTCAACGACCGCTGGCCTGAACTGGTGCCCAGCaaa               >  2:1676027/1‑289 (MQ=255)

                                                                                                                                                                                                                                                                   gTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGt      <  1:3251351/287‑1 (MQ=255)

|||

ATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGGCTACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGGCTCCCCAACATAACGCGGTGTGG‑TCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCACTATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCT  >  CP042583/1622007‑1622556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A