Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F210 I1 R1	4928	368.7	6392010	97.5%	6232209	231.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,622,280	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,622,280	0	G	C	99.7%	766.4 / NA	329	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (179/147); total (182/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,622,281	0	C	G	99.7%	776.7 / NA	329	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (181/147); minor base A (1/0); total (182/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*	CP042583	1,622,282	0	T	A	99.7%	783.6 / NA	329	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (181/147); minor base G (1/0); total (182/147)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 329 total aligned reads displayed.

CCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGGCTACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGGCTCCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCACTATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTT  >  CP042583/1622002‑1622558

|||

     atCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGTCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGACCGAACCCAACATAAc                                                                                                                                                                                                                                                                           >  2:2880388/1‑288 (MQ=255)

     atCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATaaa                                                                                                                                                                                                                                                                           >  1:409449/1‑287 (MQ=255)

     atCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAAc                                                                                                                                                                                                                                                                           >  2:706574/1‑288 (MQ=255)

           aCCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGgtgt                                                                                                                                                                                                                                                                    >  2:577924/1‑289 (MQ=255)

           aCCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGgtgt                                                                                                                                                                                                                                                                    >  1:886700/1‑289 (MQ=255)

               tACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAAcg                                                                                                                                                                                                                                                                          >  1:3005201/1‑279 (MQ=255)

               tACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTc                                                                                                                                                                                                                                                               >  1:786349/1‑289 (MQ=255)

                aCTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTcg                                                                                                                                                                                                                                                              <  1:2925237/289‑1 (MQ=255)

                    aTTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCggg                                                                                                                                                                                                                                                          >  1:1559768/1‑288 (MQ=255)

                    aTTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGt                                                                                                                                                                                                                                                          >  1:2004140/1‑289 (MQ=255)

                     ttGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGt                                                                                                                                                                                                                                                          <  1:2663978/288‑1 (MQ=255)

                          aaTGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGGGTAAGAACGGTGACCGACCCCAACCTAACGCGGTGTG‑GGAGCGGTAAatta                                                                                                                                                                                                                                                    >  2:893647/1‑289 (MQ=255)

                            tgctgcTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCTCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAattatt                                                                                                                                                                                                                                                  <  2:469463/289‑1 (MQ=255)

                            tgctgcTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAattatt                                                                                                                                                                                                                                                  >  2:1051110/1‑289 (MQ=255)

                              ctgctTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCGTCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAAcg                                                                                                                                                                                                                                                                          <  2:367535/264‑1 (MQ=255)

                              ctgctTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAAcg                                                                                                                                                                                                                                                                          <  1:2309889/264‑1 (MQ=255)

                                    aGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCa                                                                                                                                                                                                                                          <  1:745620/289‑1 (MQ=255)

                                    aGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCa                                                                                                                                                                                                                                          >  1:1752352/1‑289 (MQ=255)

                                         aTCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAAAGGGGAGCGACCCCAACATAACGCGG‑GTGTGTCGCGGTAAATTATAAAACGCCAGGGCg                                                                                                                                                                                                                                     >  2:519166/1‑289 (MQ=255)

                                           cGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGAc                                                                                                                                                                                                                                   >  1:973039/1‑289 (MQ=255)

                                                gTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGc                                                                                                                                                                                                                              >  1:1435290/1‑289 (MQ=255)

                                                gTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGc                                                                                                                                                                                                                              >  1:1110986/1‑289 (MQ=255)

                                                       caacaTATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAAGGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTAt                                                                                                                                                                                                                       <  1:3103014/289‑1 (MQ=255)

                                                               tcaggcgagCCCGCTTCAGCGGGGGTTTTGTCATCCAGTTGGTCCTGGGGAATGGCTTCATCTGCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTGAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACCATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGc                                                                                                                                                                                                                <  2:2764566/280‑1 (MQ=255)

                                                                        cccGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATc                                                                                                                                                                                                        >  1:2481922/1‑287 (MQ=255)

                                                                                aCCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACagag                                                                                                                                                                                                                               >  2:3182406/1‑256 (MQ=255)

                                                                                aCCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACagag                                                                                                                                                                                                                               <  1:3182406/256‑1 (MQ=255)

                                                                                   ggCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCA‑‑‑TCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACagag                                                                                                                                                                                                                               >  1:1668588/1‑250 (MQ=255)

                                                                                     cGATTTTGCATTCCGGTCCGTCCCGGGGAATGGCTTCATCTTTTTTTGCAGCTGGTTACATCGCCTCACTGGCTTCAGGTAATAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCAAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                         <  2:77267/289‑1 (MQ=255)

                                                                                                 caaGTTCGCTCTGGGGAATTGCGTCTTCTTCTTGTGCAGGTTGATCAATCGGCTCACTTGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                              <  2:2558932/286‑1 (MQ=255)

                                                                                                       cGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTTCCCGTAATCACTGCCTCATTAATCTCCTTTCAGGCAGCTccc                                                                                                                                                                       >  1:2958652/1‑287 (MQ=255)

                                                                                                          ccTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGAc                                                                                                                                                                                                                                   <  2:1637158/226‑1 (MQ=255)

                                                                                                          ccTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACt                                                                                                                                                                                                     >  2:2408435/1‑256 (MQ=255)

                                                                                                              gggAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAAAGCGGTGTG‑GTCCCGGTAACTTAATACACGCCAGGGCGACAGAGCGGGGTCACTGTTGCCGGAAATCCTGTCCACCTCAATCTCCTTCCCGCCAGCCGGCATACAgg                                                                                                                                                                >  2:1196390/1‑289 (MQ=255)

                                                                                                                   tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAAcg                                                                                                                                                                                                                                                                          <  1:2779563/179‑1 (MQ=255)

                                                                                                                   tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACaga                                                                                                                                                                                                                                >  2:2602036/1‑220 (MQ=255)

                                                                                                                   tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTg                                                                                                                                                                                                                    <  1:2524590/232‑1 (MQ=255)

                                                                                                                   tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                         <  2:1146314/259‑1 (MQ=255)

                                                                                                                   tGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTgg                                                                                                                                                            >  2:863924/1‑288 (MQ=255)

                                                                                                                        tCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                              >  2:2677145/1‑265 (MQ=255)

                                                                                                                         cATCTTCTTGTACAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATTGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGCCCGCCAGACAGCGACGGCCAGATTAAGCACGGTTAGCAACCCCAACATAACGCGGAGTG‑GTAGCGGCAAATTATTAAACGCCAGGGCGACAGAGCGGGCTCTCTGTTTCACGTAATCACTTCCCCATTAATCACCTTTCATGCAGCTCGCATACTGGTTGGTTAATTg                                                                                                                                                     >  2:2456592/1‑289 (MQ=255)

                                                                                                                          aTCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTg                                                                                                                                                     >  2:3191213/1‑288 (MQ=255)

                                                                                                                          aTCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGa                                                                                                                                                    <  1:3191213/289‑1 (MQ=255)

                                                                                                                               cttTTGCAGCTTGATCTAGCGGCTCACTGGTTTCAGGACAGAGCAGACGAATTTCGTTCTGTTCCAGCTCCAAGGTTTTGACAATTGGCGTGTCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAg                                                                                                                                               <  2:1110986/289‑1 (MQ=255)

                                                                                                                               cttGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAg                                                                                                                                               <  1:1636420/289‑1 (MQ=255)

                                                                                                                               cttGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAg                                                                                                                                               >  1:856372/1‑289 (MQ=255)

                                                                                                                                ttGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAgg                                                                                                                                              >  2:2327109/1‑289 (MQ=255)

                                                                                                                                     cAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAAt                                                                                                                                           >  2:1586584/1‑287 (MQ=255)

                                                                                                                                        cTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATa                                                                                                                                                                    >  2:669389/1‑259 (MQ=255)

                                                                                                                                        cTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAg                                                                                                                                               >  2:2628999/1‑280 (MQ=255)

                                                                                                                                        cTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctga                                                                                                                                      >  1:2739471/1‑286 (MQ=255)

                                                                                                                                         ttGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGc                                                                                                                                                                           >  1:1453420/1‑251 (MQ=255)

                                                                                                                                          tGATCAATCGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaa                                                                                                                                     >  2:2037444/1‑284 (MQ=255)

                                                                                                                                                  cGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCa                                                                                                                                                                             >  1:2088409/1‑240 (MQ=255)

                                                                                                                                                  cGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCa                                                                                                                                                                             <  2:2088409/240‑1 (MQ=255)

                                                                                                                                                  cGGCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGtt                                                                                                                            >  2:2790077/1‑289 (MQ=255)

                                                                                                                                                   ggCTCACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaatagc                                                                                                                                 >  1:1146875/1‑275 (MQ=255)

                                                                                                                                                       cACTGGCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTAcc                                                                                                                       <  2:1435290/289‑1 (MQ=255)

                                                                                                                                                           ggCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTgg                                                                                                                                                            >  1:635312/1‑248 (MQ=255)

                                                                                                                                                           ggCTTCAGGTAAGAGCGAACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTgg                                                                                                                                                            <  2:635312/248‑1 (MQ=255)

                                                                                                                                                                    taagagcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATAtt                                                                                                           <  1:1217432/279‑1 (MQ=255)

                                                                                                                                                                      agagcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACtt                                                                                                                                                                                                    <  1:1055453/190‑1 (MQ=255)

                                                                                                                                                                        agcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGgt                                                                                                                                                                                                                                                                      <  1:2118397/125‑1 (MQ=255)

                                                                                                                                                                        agcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACagag                                                                                                                                                                                                                               <  2:3041831/163‑1 (MQ=255)

                                                                                                                                                                        agcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaatagc                                                                                                                                 >  2:1459070/6‑254 (MQ=255)

                                                                                                                                                                        agcgaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGACAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACCTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTACTTGACTCAGGAATTCTGAATACCTTGTTTTCCCCAGTTTGATATTCGTc                                                                                                       >  2:1217432/6‑288 (MQ=255)

                                                                                                                                                                           gaaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                         <  1:2167922/201‑1 (MQ=255)

                                                                                                                                                                            aaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                              <  1:577405/212‑1 (MQ=255)

                                                                                                                                                                            aaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaa                                                                                                                                     <  1:1041947/253‑5 (MQ=255)

                                                                                                                                                                            aaCGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGCAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATAtt                                                                                                           <  2:3138607/279‑1 (MQ=255)

                                                                                                                                                                                  tttCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAt                                                                                                                                                                                          <  2:1256674/195‑1 (MQ=255)

                                                                                                                                                                                            ttCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACACAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAattatt                                                                                                                                                                                                                                                  <  1:6993/129‑1 (MQ=255)

                                                                                                                                                                                                 gCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTTAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGACGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCTCATACTGGTTGGCAAATTGACTCAGTAATTCTGAATACCTTGTTTTCCATAGTTTGCTATTCTTCCACAGGGGATACAACGTTCACATACg                                                                             >  2:2125239/1‑289 (MQ=255)

                                                                                                                                                                                                 gCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTAcc                                                                                                                       <  1:437825/247‑1 (MQ=255)

                                                                                                                                                                                                 gCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTcc                                                                                                      <  2:1752283/264‑1 (MQ=255)

                                                                                                                                                                                                 gCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACg                                                                             >  1:1291051/1‑289 (MQ=255)

                                                                                                                                                                                                      aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTTTTGCACGTAATCACTTCTTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGCCTAATTGACTCAGGAATTCTTAATAGCTTGTTTTACCCAGTTTGTTATTCTTCCCTAGGTGGTCCACTGTTTCCATACGACCgg                                                                        >  2:2147843/1‑289 (MQ=255)

                                                                                                                                                                                                      aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                         >  1:1942097/1‑176 (MQ=255)

                                                                                                                                                                                                      aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAAtc                                                                                                                                                                                         <  2:1942097/176‑1 (MQ=255)

                                                                                                                                                                                                      aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaatagc                                                                                                                                 >  1:315132/1‑224 (MQ=255)

                                                                                                                                                                                                      aTGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaatagc                                                                                                                                 >  1:1001792/1‑224 (MQ=255)

                                                                                                                                                                                                            ttGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGc                                                                                                                                                                              >  2:1036902/1‑181 (MQ=255)

                                                                                                                                                                                                                    tGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaatagc                                                                                                                                 >  1:2716397/1‑210 (MQ=255)

                                                                                                                                                                                                                    tGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCg                                                          >  1:2389576/1‑289 (MQ=255)

                                                                                                                                                                                                                                     gATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGt                                                                                                        <  2:2377026/226‑1 (MQ=255)

                                                                                                                                                                                                                                     gATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCg                                          <  2:2996731/288‑1 (MQ=255)

                                                                                                                                                                                                                                      aTAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGTTCCAACGTTCCCATACGAACGGATTTTCCTCGTGCTGCGCTCTCAAAGACCACt                                        >  1:1202869/1‑289 (MQ=255)

                                                                                                                                                                                                                                            aTAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTg                                  >  2:2724537/1‑289 (MQ=255)

                                                                                                                                                                                                                                              aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTAcc                                                                                                                       <  1:2358580/202‑1 (MQ=255)

                                                                                                                                                                                                                                              aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATAtt                                                                                                           >  2:1695328/1‑214 (MQ=255)

                                                                                                                                                                                                                                              aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATAtt                                                                                                           <  1:1695328/214‑1 (MQ=255)

                                                                                                                                                                                                                                              aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAg                                                                                                  <  1:661046/223‑1 (MQ=255)

                                                                                                                                                                                                                                              aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGa                                                                       <  1:1921218/250‑1 (MQ=255)

                                                                                                                                                                                                                                              aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGa                                                                       >  2:1921218/1‑250 (MQ=255)

                                                                                                                                                                                                                                              aaGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGa                                 >  2:951713/1‑288 (MQ=255)

                                                                                                                                                                                                                                                           aGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGcc                                    <  2:222786/272‑1 (MQ=255)

                                                                                                                                                                                                                                                           aGCGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGcc                                    >  1:222786/1‑272 (MQ=255)

                                                                                                                                                                                                                                                             cGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCa                                                                                                                                                                      <  1:510860/140‑1 (MQ=255)

                                                                                                                                                                                                                                                             cGACGGCCAGAGTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTctgaatagc                                                                                                                                 <  1:2613304/177‑9 (MQ=255)

                                                                                                                                                                                                                                                                       agTAAGAACGGTGAGCGACCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCTGAATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGtt       >  1:944988/1‑289 (MQ=255)

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CCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTGATCAATCGGCTCACTGGCTTCAGGTAAGAGGCTACGAATTTCGTTCTGTTCCAGCTCAATGGTTTTGACAATTGGCGTGGCATCACGGTGATAAACATAAGGCCGCCAGACAGCGACGGCCAGAGTAAGAACGGTGAGGCTCCCCAACATAACGCGGTGTG‑GTCGCGGTAAATTATTAAACGCCAGGGCGACAGAGCGGGCTATCTGTTGCACGTAATCACTTCCTCATTAATCTCCTTTCAGGCAGCTCGCATACTGGTTGGCTAATTGACTCAGGAATTCACTATAGCTTGTTTTACCCAGTTTGATATTCGTCCCCAGGGGATCCAACGTTCCCATACGAACGGATGTCCCTCGTGCGACGCTCTCAACGACCGCTGGCCTGAACTGTGGCTCAGCAAAAACGCAGGTTGCTTT  >  CP042583/1622002‑1622558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A