Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F167 I0 R1 193 197.0 4372636 93.1% 4070924 215.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 2,906,975 C→G 100% D450H (GAC→CAC)  pyrG ← CTP synthase (glutamine hydrolyzing)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077792,906,9750CG100.0% 462.3 / NA 139D450H (GAC→CAC) pyrGCTP synthase (glutamine hydrolyzing)
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (80/59);  total (80/59)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 145 total aligned reads displayed.

GCGGGTGACCATCACGTGGAGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTCAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCATACCCAGGCAAATGCCCAGA  >  NC_007779/2906741‑2907198
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                
  gggTGACCATCACGTGGAGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACTGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTgaacca                                                                                                                                                                                                                             <  2:261941/238‑1 (MQ=255)
  gggTGACCATCACGTGGAGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTgaacca                                                                                                                                                                                                                             <  2:614003/238‑1 (MQ=255)
        ccATCACGTGGAGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCa                                                                                                                                                                                                                      <  1:657519/239‑1 (MQ=255)
              cGTGGAGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCCGGCGAACCAGGCTATCGTGAACCAACTGGCA‑ct                                                                                                                                                                                                                   >  2:792716/1‑235 (MQ=255)
                tGGAGGTGAAGTAAACTCCGGATGGAACTGGAAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCtgt                                                                                                                                                                                                              <  2:197951/238‑1 (MQ=255)
                   aGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTgcg                                                                                                                                                                                                           >  1:105851/1‑238 (MQ=255)
                   aGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTgcg                                                                                                                                                                                                           <  1:393725/238‑1 (MQ=255)
                     tAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCg                                                                                                                                                                                                        >  1:372566/1‑239 (MQ=255)
                                  cGGATGGAACTGGCAAGCCACGAACCACGGGTGATTAGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCACCGCGA‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCCTTGTACAGCTGGCGAACCACGCCATCGTGTAACAACTAGCA‑CTGCTGTACGCCTAAACGCATTGTa                                                                                                                                                                                            >  2:1268473/1‑238 (MQ=255)
                                   ggATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTAc                                                                                                                                                                                           >  2:1191970/1‑238 (MQ=255)
                                    gATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTAcc                                                                                                                                                                                          >  2:1301923/1‑238 (MQ=255)
                                     aTGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGCAccg                                                                                                                                                                                         >  2:1450442/1‑238 (MQ=255)
                                          aCTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCgaga                                                                                                                                                                                   <  1:1292513/239‑1 (MQ=255)
                                          aCTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCgaga                                                                                                                                                                                   <  1:1372460/239‑1 (MQ=255)
                                          aCTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCgaga                                                                                                                                                                                   <  1:1664565/239‑1 (MQ=255)
                                            tGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCgag                                                                                                                                                                                                      >  2:14103/1‑218 (MQ=255)
                                            tGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCgag                                                                                                                                                                                                      <  1:14103/218‑1 (MQ=255)
                                                aaGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGctc                                                                                                                                                                             <  1:1373344/239‑1 (MQ=255)
                                                   ccACGAACCACGGGTGATTCGGGACTTCGATGATCTCGACCAACTGATCCTCCCCGGAACGGCCCGCAACGGGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGCAACGGTGACGATGACGCTCAAAAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAGATGGCA‑CTGCTGAGCGCCGAGCCGCAGGCTAc                                                                                                                                                                                           >  2:724130/1‑222 (MQ=255)
                                                   ccACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGctct                                                                                                                                                                            >  1:1667118/1‑237 (MQ=255)
                                                   ccACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGctct                                                                                                                                                                            >  1:641089/1‑237 (MQ=255)
                                                         aCCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTa                                                                                                                                                                    <  1:1659638/239‑1 (MQ=255)
                                                          ccACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTAc                                                                                                                                                                   <  1:792716/239‑1 (MQ=255)
                                                           cACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACg                                                                                                                                                                  <  1:637969/239‑1 (MQ=255)
                                                             cGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCC‑CTGCTGTGCGCCGAGAAGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGa                                                                                                                                                                 >  2:1966725/1‑238 (MQ=255)
                                                              gggTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑ctgct                                                                                                                                                                                                                >  1:978188/1‑190 (MQ=255)
                                                              gggTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑ctgct                                                                                                                                                                                                                <  2:978188/190‑1 (MQ=255)
                                                                    ttCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGA‑AGACCTGCATCTTCAATCTGTTTAAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAAc                                                                                                                                                         >  1:828531/1‑239 (MQ=255)
                                                                     tCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACg                                                                                                                                                        >  1:2183862/1‑239 (MQ=255)
                                                                     tCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGAGCGCCCTTCTCGCTACGAACGTCAACg                                                                                                                                                        >  2:1606026/1‑239 (MQ=255)
                                                                     gcgagccatgcatgatCCCGACCAACGTATCATCCCCGAAACGGCCCCACACGCGC‑AGACCTGCTTCTTCAATCTGTTTCAACAGCATGTTGTTGCCTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGGGCATTGTACGGCTGGCGAACCAGGCTATCGTGAACCACCTGGCA‑CTGCTGTGCGCCGAGACGCTTGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACg                                                                                                                                                        <  2:950971/228‑1 (MQ=255)
                                                                                      ccccccAACTGATCACCCCCGGAACCGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGCTTTCGTAACGGTGACGATGACGCTCAACAATTGTGGGCGCATGGTCCGGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATcgcg                                                                                                                                       <  2:1667118/235‑1 (MQ=255)
                                                                                        gACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGcc                                                                                                                                     <  1:2097568/239‑1 (MQ=255)
                                                                                        gACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGcc                                                                                                                                     >  1:1268688/1‑239 (MQ=255)
                                                                                           cAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACt                                                                                                                                  <  1:992802/239‑1 (MQ=255)
                                                                                               tGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGGGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGt                                                                                                                              >  1:2044893/1‑239 (MQ=255)
                                                                                                  tcatcCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTaa                                                                                                                            >  2:1061199/1‑238 (MQ=255)
                                                                                                   cgcccccGGAACGG‑CCGTCACGCTCAAGCCCTCCATCTTCAATCTGTTGCAACAGCATGTTTTTGATTTGGTAACGGTGACGCTGACTCTCAAAATTGGTCGGCGCATTGTACAGCTGGCGAACGAGGCTATCGTGAACC‑ACTGGGAGCTGCTGGGGGCAGAGAGGCATGGTACCGCCGAGGTCGCTCTTCTCGCTGCGAACTTCAACGTTGCCGTTTTCATCGAGCCACTCGGTAATc                                                                                                                          <  2:165807/236‑1 (MQ=255)
                                                                                                        ccGGACCGGCCCGCAACGCGC‑AGACCGGCATCTTCAATCTGTTTAAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGACCCAACTGGCC‑CTGCTGTGCGCCGGGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAgcgc                                                                                                                     <  2:342549/239‑1 (MQ=255)
                                                                                                        ccGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGCCGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAgcgc                                                                                                                     <  1:1001659/239‑1 (MQ=255)
                                                                                                        ccGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAgcg                                                                                                                      >  1:56224/1‑238 (MQ=255)
                                                                                                         cGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACTATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCa                                                                                                                                                           >  1:1692671/1‑200 (MQ=255)
                                                                                                         cGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCACCGTTGCCGTTTTCATCGCGCCACTCGGTAATCAgcgc                                                                                                                     >  2:36841/1‑238 (MQ=255)
                                                                                                         cGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGcc                                                                                                                                     >  2:1419139/1‑222 (MQ=255)
                                                                                                         cGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGcc                                                                                                                                     <  1:1419139/222‑1 (MQ=255)
                                                                                                         cGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAgcgc                                                                                                                     >  1:893362/1‑238 (MQ=255)
                                                                                                         cGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGCTTTCATCGCGCCACTCGGTAATCAgcgc                                                                                                                     >  1:816691/1‑238 (MQ=255)
                                                                                                         cGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCAGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTAAACGTTGCCGTTTTCATCGCGCCACTCGGCACTAAgcgc                                                                                                                     >  2:353986/1‑238 (MQ=255)
                                                                                                           gAACGGCCCGCCACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACCGCATGATGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCGGGCGAACCAGGCTCTCGTGAACCAACTGGCA‑CCGCTGGGCGCCGAGACGCATGGTACCGCCGAGATCGCTCCTCTCGCGACGAACTTCAACGTTGCCGTTTTCATCGCTCCACTCGGTAATCAgcgtccc                                                                                                                  >  2:1294745/1‑235 (MQ=255)
                                                                                                              cGGCCCGCAACGCGC‑AGCCCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTAAACAATTGTCGGCGCATTGTACAGCTGGCGACCCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGAGGCATGTTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAAc                                                                                                               <  1:746896/239‑1 (MQ=255)
                                                                                                              cGGCCCGCAACGCGC‑AGACCTGCATCTTAAATCTGTTTAAACAGCATGTGGTTGCCTTCGTAACGGTGACGAGGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCAAACCAGGCTATCTTGACCCACCTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAAc                                                                                                               <  2:2183862/239‑1 (MQ=255)
                                                                                                               ggCCCGCAACGCGC‑AGACCTGCATGTTCAATCTTTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTTTCGGCGCATTGTAAAGCTGGCGAACAAGGCTATCGTGAACCACCTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAAcc                                                                                                              <  1:1088919/239‑1 (MQ=255)
                                                                                                                gCCCGCAATGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCg                                                                                                             >  2:981083/1‑239 (MQ=255)
                                                                                                                 cccGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACACCCgg                                                                                                            >  2:2156228/1‑239 (MQ=255)
                                                                                                                 cccGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACACGGTAATCACCGCCACAAcacg                                                                                                            >  2:266515/1‑236 (MQ=255)
                                                                                                                  ccGCAACGCGC‑CAACCTGCATCTTAAACCTGTTTCAACAGCATGTTGTTGACTTCGTACCGGGGACGATGACGCGCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCTGGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCggg                                                                                                           <  2:792089/239‑1 (MQ=255)
                                                                                                                  ccGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAGCGGTGCCGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCggg                                                                                                           <  1:1895278/239‑1 (MQ=255)
                                                                                                                  ccGAAACGCGG‑ACACCTGCCTCTACAATCTTTTTCAACAGCATTTTGTTGCATGTGAACCGGGAACGATGACGCTGAACAATGGTCGGCGCATGGTAAAGCTGGCGACCCAGGTTATCGTGAACCACCTGGCA‑CTGCTGTGCGCCGAGACGCATGGTTCCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCggg                                                                                                           <  2:372566/239‑1 (MQ=255)
                                                                                                                   cGCAAGCCGC‑AGCCCTGCATTTTCAATCTGCTACAACAGCATGTTGTTGACTTCGTAAGGTTGACGCTGACTCTCAACAATTGTCGGCGCATTGTACACCGGGCGAACGAGGCTATCGAGAACCACCTGGCA‑CTGCTGTGCGCCGACACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTACATCGCGCCACTCGGTAATCAGCGCCACAACCGGGt                                                                                                          <  2:707011/239‑1 (MQ=255)
                                                                                                                                cacTGAATCTCCAGTCTGTTTCAAAAGCATGTTGTGGCCTTCGTAACGGTGACGAGGACGCTAAACAATTGTCGGCGCATTGTACGGCTGGCGACCCAGGCTATCGTGAACCACCTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCggg                                                                                                           <  2:1471383/224‑1 (MQ=255)
                                                                                                                                          tCAATCTGTTTCAACAGCATGTTGTTGACTTCGTATCGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAAtt                                                                                     >  2:393299/1‑238 (MQ=255)
                                                                                                                                          tCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGt                                                                                                 >  1:1471383/1‑226 (MQ=255)
                                                                                                                                          tCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAAtt                                                                                     >  2:2036972/1‑238 (MQ=255)
                                                                                                                                          tCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAAtt                                                                                     >  1:1012622/1‑238 (MQ=255)
                                                                                                                                          tCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAAtt                                                                                     >  1:1539849/1‑238 (MQ=255)
                                                                                                                                            aaTCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCg                                                                                  >  1:1929806/1‑239 (MQ=255)
                                                                                                                                                  tttCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCa                                                                                                                                    >  1:1897579/1‑183 (MQ=255)
                                                                                                                                                  tttCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGt                                                                            >  1:877954/1‑239 (MQ=255)
                                                                                                                                                  tttCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATGGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCa                                                                                                                                    <  2:1897579/183‑1 (MQ=255)
                                                                                                                                                       agcgcgttttgttgATTTCTTAAGGGTGACGATGCCGCTCAACAATTGTCGGCGCATTGTCCAGCTGGCAACCCAGGCTATCGTGAACCACCGGGCA‑CGGCTGTGCGCCGAGACGCGTGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCg                                                                       <  2:545021/231‑1 (MQ=255)
                                                                                                                                                       aagtcATGTTGTTGTCGTCGTACCGGTGTCGATGCCGCTCACCAGTGGGCGGCGCAGTGTACGGCTGGAGACCCGGGCTTTCGTGAACCAACTGGAA‑CTGCGGTGCGCCGAGACGCATGTTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCg                                                                       <  2:1861030/235‑1 (MQ=255)
                                                                                                                                                       aCAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCg                                                                       <  1:2036972/239‑1 (MQ=255)
                                                                                                                                                        cAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCggg                                                                                                           >  2:1037342/1‑202 (MQ=255)
                                                                                                                                                                 gttgACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGt                                                             <  1:1174584/239‑1 (MQ=255)
                                                                                                                                                                 gcagaattCGTAACGGAGACGTATACGCTCAAAAATACGCTGCTCCTTCTCCGGCGGCGGAACGAGGATGTCGTGACCCAACCTGCC‑CTGCTGTCCGCCGACTCCCAGGTTGCCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGt                                                             <  2:10887/233‑1 (MQ=255)
                                                                                                                                                                     aCTTCGTAACGGTGACGCGGACGCTCAACAATTGTCGGAGCATTGTACAGCTGTCGAACCAGGCTATCGCGAACTAACTGGCA‑ATGCTGTGCGTCGAGTCGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTACAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATGCCGTAGAGTTGGCGTTCTCCATTTTGGc                                                         >  2:1321203/1‑239 (MQ=255)
                                                                                                                                                                       ttCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCa                                                        >  1:2178612/1‑238 (MQ=255)
                                                                                                                                                                           tAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATg                                                   >  1:1020193/1‑239 (MQ=255)
                                                                                                                                                                            aaCGGGGACGATGCCCCTCAAAAATTGTCGGCGCATTGTCCGGCTGGCGACCCAGGCTTTCGTGAACCAACGGGCC‑CTGCTGTGCGCCGAGACGCTTGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATgg                                                  <  2:1020193/239‑1 (MQ=255)
                                                                                                                                                                                 cgACGATGACGCTCAACAATTGCCGGCGCCTTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGCACGCCCTTCCCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTCATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTCGAGTTGGCGTTCCCCATGTTGGCCACATGGCCAGc                                             >  2:490748/2‑239 (MQ=255)
                                                                                                                                                                                  gACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGc                                             <  1:1301923/238‑1 (MQ=255)
                                                                                                                                                                                          cGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGATCTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGCCGAGCGTAATCAAt                                    >  1:1632960/1‑239 (MQ=255)
                                                                                                                                                                                             tCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGc                                                 >  1:355887/1‑223 (MQ=255)
                                                                                                                                                                                              cacaaaTTCTGGGCGATTTGTACGCCGGCCGACCCGGGTTATCGGGAACCACCTGCAC‑CTGCTGTGCGCCGAGACGCTGGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAAc                                <  2:56224/235‑1 (MQ=255)
                                                                                                                                                                                                 caaTTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGcc                             <  1:76861/239‑1 (MQ=255)
                                                                                                                                                                                                 caaTGGTCGACGTATTTTACATCTGCCTACGCAGCTTAGCGTGAACCAACTGACC‑CTGCTGTCCCCCGGTGCGCGTTGTCCCGCCCATATCGCTCTTCGCGCTACGAGCTTCAACGTTGCCTTTTTCATCGCGCCGCTCGGTAATCAGCGCCACAACCTGGTACTTACAGTCTGGCGCAAATTCCGTAGATTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGcc                             <  2:389224/239‑1 (MQ=255)
                                                                                                                                                                                                    ttGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCaa                                                       >  1:881281/1‑210 (MQ=255)
                                                                                                                                                                                                     tGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAAt                                                                                                                           >  1:1086541/1‑141 (MQ=255)
                                                                                                                                                                                                         ggCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCAt                     >  1:52213/1‑239 (MQ=255)
                                                                                                                                                                                                         ggCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCAt                     >  1:803589/1‑239 (MQ=255)
                                                                                                                                                                                                         ggCGCATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCAt                     >  1:578097/1‑239 (MQ=255)
                                                                                                                                                                                                           cgcATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACaaa                                                                                       >  2:1939068/1‑171 (MQ=255)
                                                                                                                                                                                                           cgcATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACaaa                                                                                       <  1:1939068/171‑1 (MQ=255)
                                                                                                                                                                                                           cgcATTGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCATa                    >  1:1207069/1‑238 (MQ=255)
                                                                                                                                                                                                                tGTACAGCTGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCATACCCAg               >  2:333870/1‑238 (MQ=255)
                                                                                                                                                                                                                cgTACAGCTGGCGAACCAGGCTATCGTGAACCACCGCGCA‑CTGCTGTGCGCCGAGACGCTTGGTACCGCCGAGACCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCGCTCGGTAATCAGCGCCACAACCGGGTACTTACAGt                                                                                                 <  2:462202/155‑1 (MQ=255)
                                                                                                                                                                                                                        tGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACTCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACACGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATAAACGCCACCTGCATACCCAGGCAAATGcc      <  1:1294745/239‑1 (MQ=255)
                                                                                                                                                                                                                        tGGCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCATACCCAGGCAAATGcc      <  1:508181/239‑1 (MQ=255)
                                                                                                                                                                                                                          gCGAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGACCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACaaa                                                                                       >  1:462202/1‑156 (MQ=255)
                                                                                                                                                                                                                            gAACCAGGCTATCGTGAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCATACCCAGGCAAATGCCCAGa  >  2:943977/1‑239 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                
GCGGGTGACCATCACGTGGAGTAGAAGTAAACTCCGGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGC‑AGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAACCAGGCTATCGTCAACCAACTGGCA‑CTGCTGTGCGCCGAGACGCATGGTACCGCCGAGATCGCTCTTCTCGCTACGAACTTCAACGTTGCCGTTTTCATCGCGCCACTCGGTAATCAGCGCCACAACCGGGTACTTACAGTCTGGCACAAATTCCGTAGAGTTGGCGTTCTCCATGTTGGCAACATGGCGAGCGTAATCAATTAACGCCACCTGCATACCCAGGCAAATGCCCAGA  >  NC_007779/2906741‑2907198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A