Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 715 38.4 1606192 96.6% 1551581 120.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,893,961 Δ3 bp coding (43‑45/261 nt) ygcO → putative 4Fe‑4S cluster‑containing protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2893961 2893963 3 47 [0] [0] 47 ygcO putative 4Fe‑4S cluster‑containing protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28939600 (0.000)47 (1.190) 34/238 0.2 100% coding (42/261 nt) ygcO putative 4Fe‑4S cluster‑containing protein
?NC_000913 2893964 = 0 (0.000)coding (46/261 nt) ygcO putative 4Fe‑4S cluster‑containing protein

GATK/CNVnator alignment

N/A