Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F1 I1 R1 770 51.4 2439994 93.8% 2288714 110.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,893,961 Δ3 bp coding (43‑45/261 nt) ygcO → putative 4Fe‑4S cluster‑containing protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2893961 2893963 3 46 [0] [0] 46 ygcO putative 4Fe‑4S cluster‑containing protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28939600 (0.000)46 (0.870) 32/218 0.5 100% coding (42/261 nt) ygcO putative 4Fe‑4S cluster‑containing protein
?NC_000913 2893964 = 0 (0.000)coding (46/261 nt) ygcO putative 4Fe‑4S cluster‑containing protein

GATK/CNVnator alignment

N/A