Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
777 |
59.2 |
2955938 |
92.5% |
2734242 |
106.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,913,699 |
C→T |
*434* (TAG→TAA) |
rlmD ← |
23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,913,699 | 0 | C | T | 100.0%
| 335.4
/ NA
| 103 | *434* (TAG→TAA) | rlmD | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (51/52); total (51/52) |
Only 100 of 104 total aligned reads displayed.
GCTGGTAATACCCAGACTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAACTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTGCAGGGTTA > NC_000913/2913568‑2913834
|
gctggTAATACCCAGACTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTaa > 2:557652/1‑139 (MQ=255)
tAATACCCAGACTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAAcgcgc < 1:1312564/139‑1 (MQ=255)
aCTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTa > 2:726503/1‑139 (MQ=255)
aCTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTa > 2:171308/1‑139 (MQ=255)
aCTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCC‑TTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTAc > 2:366292/1‑139 (MQ=255)
ttGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTAcc < 2:630615/139‑1 (MQ=255)
ttGCGATCCATTTTTCCGAATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCGG‑‑AAATCGGAAAATCGCAATTATTTACCGCGCGAGAAAAGTAcc < 2:1350803/139‑1 (MQ=255)
tttttCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGAt > 1:1060265/1‑135 (MQ=255)
tttCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGa < 1:593718/139‑1 (MQ=255)
cGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTc > 1:629392/1‑139 (MQ=255)
aTTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCa > 2:716627/1‑139 (MQ=255)
atGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCg > 1:73080/1‑139 (MQ=255)
tgtgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAAcgcgc < 2:1443272/83‑1 (MQ=255)
tgtgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAAcgcgc > 1:1443272/1‑83 (MQ=255)
gtgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGcc > 2:528408/1‑139 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTAttt > 1:585017/1‑74 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTAttt < 2:585017/74‑1 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAAcgcgcg < 2:334254/82‑1 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAAcgcgcg > 1:334254/1‑82 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAAcgcgc < 1:924515/81‑1 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAAcgcgc > 2:924515/1‑81 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGa < 1:408250/121‑1 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGa > 2:408250/1‑121 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCa > 1:696488/1‑139 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCa > 2:529098/1‑139 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCa > 2:545250/1‑139 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCa > 1:1288171/1‑139 (MQ=255)
tgCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCa > 2:391925/1‑139 (MQ=255)
gCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTa > 1:972072/1‑90 (MQ=255)
cACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGt > 1:960319/1‑139 (MQ=255)
cACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGAGCGAGTAAAGTACCGTCGATTCCAGATGTCCCGTGTGAGGGAACAAATCCACCATCACCact > 1:1420080/1‑137 (MQ=255)
aCTTCTTACCGCAACCATCGTCCTCTCC‑TTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcg < 1:366292/139‑1 (MQ=255)
cttcttACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcg < 1:1155481/139‑1 (MQ=255)
ttcttACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgc > 1:95910/1‑139 (MQ=255)
tcttACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg < 1:171308/139‑1 (MQ=255)
tcttACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg < 2:696488/139‑1 (MQ=255)
tcttACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg < 2:1218788/139‑1 (MQ=255)
ttACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa < 2:629392/139‑1 (MQ=255)
ttACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa < 2:73080/139‑1 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCT‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg < 2:249336/135‑1 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTAttt > 2:533290/1‑64 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCgtg < 2:292211/104‑1 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCgtg > 1:292211/1‑104 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg > 1:249336/1‑135 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa > 2:317595/1‑137 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa < 1:1428864/137‑1 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa < 1:317595/137‑1 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa > 2:1428864/1‑137 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAAt > 2:261243/1‑139 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAAt < 2:1288171/139‑1 (MQ=255)
aCCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCCCGCAAt > 2:703288/1‑139 (MQ=255)
aCCGCAACCATCGTCCTCTACTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTAttt < 1:533290/64‑1 (MQ=255)
gCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGt < 1:528408/139‑1 (MQ=255)
aaCCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg < 1:199334/130‑1 (MQ=255)
aaCCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg > 2:199334/1‑130 (MQ=255)
aCCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa > 1:507646/1‑131 (MQ=255)
aCCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa < 2:507646/131‑1 (MQ=255)
aTCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATcc < 1:545250/139‑1 (MQ=255)
tCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCt < 2:95910/139‑1 (MQ=255)
tcCTTTATGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCg < 1:1056911/84‑1 (MQ=255)
tcCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCg > 2:1056911/1‑84 (MQ=255)
ccTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTc < 1:229704/80‑1 (MQ=255)
ccTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTc > 2:229704/1‑80 (MQ=255)
ccTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTtaat < 2:839243/139‑1 (MQ=255)
cTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGTGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa > 2:644617/1‑117 (MQ=255)
cTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGTGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa < 1:644617/117‑1 (MQ=255)
aCCAGACCTGCCGAAAAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGa < 1:262953/85‑1 (MQ=255)
aCCAGACCTGCCGAAAAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGa > 2:262953/1‑85 (MQ=255)
aCCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg < 1:822838/107‑1 (MQ=255)
aCCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg > 2:822838/1‑107 (MQ=255)
aCCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa > 2:1266768/1‑109 (MQ=255)
aCCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCa < 1:1266768/109‑1 (MQ=255)
aCCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCt > 1:730561/1‑124 (MQ=255)
aCCAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCt < 2:730561/124‑1 (MQ=255)
ccAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCAGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGc < 2:1420080/139‑1 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTaa < 2:531813/36‑1 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTaa > 1:531813/1‑36 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATc > 1:45688/1‑56 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg < 2:1001698/105‑1 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcgcg > 1:1001698/1‑105 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcg > 1:1455299/1‑103 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTcg < 2:1455299/103‑1 (MQ=255)
cAGACCTGCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCAATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCt > 1:897111/1‑139 (MQ=255)
ggcTGCCG‑‑AAATCGGCAAATCGCAATTATTTCACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATc < 1:703288/137‑1 (MQ=255)
gCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACg > 1:124545/1‑125 (MQ=255)
gCCG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACg < 2:124545/125‑1 (MQ=255)
ccG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCgt < 2:1463162/65‑1 (MQ=255)
ccG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCgt > 1:1463162/1‑65 (MQ=255)
ccG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAg > 2:71502/1‑139 (MQ=255)
ccG‑‑AAATCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAg > 2:137393/1‑139 (MQ=255)
aaaTCGGCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCa < 1:35267/139‑1 (MQ=255)
gCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTg < 1:716627/139‑1 (MQ=255)
gCAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTg < 2:960319/139‑1 (MQ=255)
cAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGc > 1:402669/1‑130 (MQ=255)
cAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGc < 2:402669/130‑1 (MQ=255)
cAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTGc > 1:1210691/1‑139 (MQ=255)
cAAATCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTGc > 2:1415450/1‑139 (MQ=255)
aaaTCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTGCa < 2:587742/139‑1 (MQ=255)
aaaTCGCAATTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTGCa < 2:897111/139‑1 (MQ=255)
cAATTATTTAACGTGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTGCAGGGTTa < 1:302649/139‑1 (MQ=255)
|
GCTGGTAATACCCAGACTTGCGATCCATTTTTCCGGATCAAATTCACCAGCCTTATTGATATGTGCACTTCTTACCGCAACCATCGTCCTCTCCTTTAGGGACCAGACCTGCCG‑‑AAATCGGCAAATCGCAACTATTTAACGCGCGAGAAAAGTACCATCGATTCCAGATGTCCCGTGTGTGGGAACATATCCAGCATCGCCAGTCGCGCAATGGTATATCCTGCTTTTAATAACGCTTCGCTATCCCGAGCCAGCGTTGCAGGGTTA > NC_000913/2913568‑2913834
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
