Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I1 R1
|
778 |
68.7 |
3228504 |
93.4% |
3015422 |
109.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,162,308 |
G→A |
S121L (TCG→TTG) |
ftsP ← |
septal ring component that protects the divisome from stress, multicopy suppressor of ftsI(Ts) |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,162,308 | 0 | G | A | 100.0%
| 202.2
/ NA
| 63 | S121L (TCG→TTG) | ftsP | septal ring component that protects the divisome from stress, multicopy suppressor of ftsI(Ts) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (25/38); total (25/38) |
CTTCCACCAGCCACATTCCGGCAAGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCGACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTAACATCGTCGCCCTTCCAGACGCGGATAGT > NC_000913/3162177‑3162438
|
cTTCCACCAGCCACATTCCGGCAAGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAAcatcat < 2:699936/139‑1 (MQ=255)
aGCCACATTCCGGCAAGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCg < 2:213156/139‑1 (MQ=255)
ccACATTCCGGCAAGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGa < 1:740322/139‑1 (MQ=255)
ccACATTCCGGCAAGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGa > 1:451566/1‑139 (MQ=255)
gCAAGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCa > 2:1262392/1‑139 (MQ=255)
aaGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGc < 2:292316/139‑1 (MQ=255)
aGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCg < 1:1127015/139‑1 (MQ=255)
aGGCCGTTATAGACCTGCTCAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCTATCAGCg < 1:1054715/139‑1 (MQ=255)
cGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCATCCCGTGCCGGACCGCCCATCAGCGGGc < 2:1317780/139‑1 (MQ=255)
tataGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTgg < 2:481590/139‑1 (MQ=255)
tataGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTgg < 2:233742/139‑1 (MQ=255)
gctgAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAg > 2:1112180/1‑139 (MQ=255)
gctgAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAg > 1:1511301/1‑139 (MQ=255)
ctgAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGc > 2:923191/1‑139 (MQ=255)
ccGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGc > 2:677598/1‑139 (MQ=255)
ccGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGc < 1:677598/139‑1 (MQ=255)
cGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCg < 2:837914/139‑1 (MQ=255)
gggAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCAtt > 2:1372650/1‑139 (MQ=255)
aGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTgag > 2:846524/1‑139 (MQ=255)
tGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTg > 1:254472/1‑139 (MQ=255)
cacaGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCt > 1:1533851/1‑132 (MQ=255)
cacaGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCt < 2:1533851/132‑1 (MQ=255)
agagTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGt < 2:92160/139‑1 (MQ=255)
agTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTg < 2:38160/139‑1 (MQ=255)
agTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTg < 2:451566/139‑1 (MQ=255)
agTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTg > 1:732221/1‑139 (MQ=255)
gTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGt < 2:1434787/136‑1 (MQ=255)
gTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGt > 1:1434787/1‑136 (MQ=255)
tAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCt > 2:1538399/1‑139 (MQ=255)
tAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCt < 1:1262392/139‑1 (MQ=255)
tAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTCTCTGTCAGGCGGTTGCt < 1:923191/139‑1 (MQ=255)
cTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGt > 1:1291631/1‑124 (MQ=255)
cTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGt < 2:1291631/124‑1 (MQ=255)
tGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTaa < 1:207730/139‑1 (MQ=255)
cGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGcc < 1:753169/93‑1 (MQ=255)
cGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGcc > 2:753169/1‑93 (MQ=255)
cGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGt > 2:1177386/1‑121 (MQ=255)
cGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGt < 1:1177386/121‑1 (MQ=255)
cGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAAt < 2:254472/139‑1 (MQ=255)
cGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAAt < 2:1511301/139‑1 (MQ=255)
cGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGGGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAAt < 1:533517/139‑1 (MQ=255)
ttCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATaa > 1:563511/1‑139 (MQ=255)
cTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCggg < 1:1520129/73‑1 (MQ=255)
cTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCggg > 2:1520129/1‑73 (MQ=255)
cTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGc > 2:1180274/1‑139 (MQ=255)
tGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCt > 1:65419/1‑139 (MQ=255)
gCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTa < 2:1218561/139‑1 (MQ=255)
gCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTa < 1:1180274/139‑1 (MQ=255)
cAGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTAACAtcgtcg < 2:732221/139‑1 (MQ=255)
aGTACGGGTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTAACATCGTCGc < 2:65419/139‑1 (MQ=255)
gggTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTAACATCGTCGCCCTTc < 1:1538399/139‑1 (MQ=255)
ggTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCt < 2:417316/57‑1 (MQ=255)
ggTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCt > 1:417316/1‑57 (MQ=255)
gTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGc < 2:1379790/73‑1 (MQ=255)
gTGCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGc > 1:1379790/1‑73 (MQ=255)
gCCCAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTAACATCGTCGCCCTTCCAGa < 1:164381/139‑1 (MQ=255)
cAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGcc > 1:1076052/1‑50 (MQ=255)
cAGTCAGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGcc < 2:1076052/50‑1 (MQ=255)
aGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTgaga < 1:224551/77‑1 (MQ=255)
aGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTgaga > 2:224551/1‑77 (MQ=255)
aGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCgg < 2:1204333/94‑1 (MQ=255)
aGCGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCgg > 1:1204333/1‑94 (MQ=255)
cGTTTGGCAACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTAACATCGTCGCCCTTCCAGACGCGGATAGt < 2:1205718/139‑1 (MQ=255)
|
CTTCCACCAGCCACATTCCGGCAAGGCCGTTATAGACCTGCTGAGCCGTGCGGTTGGGAGTATTGGCGTGATACCACAGAGTAGCTGCGTTCTGGCGAATGGGCAGTACGGGTGCCCAGTCAGCGTTTGGCGACATCAT‑CCGTGCCGGACCGCCCATCAGCGGGCCTGGTACCTGTAGCCCGGCCACCGTCATTGAGACATTTTCTGTCAGGCGGTTGCTGTAAATAAGCTTAACATCGTCGCCCTTCCAGACGCGGATAGT > NC_000913/3162177‑3162438
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A