Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F1 I1 R1 759 65.2 3386260 90.7% 3071337 101.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,984,193 G→A *412* (TAG→TAA)  aslB → putative AslA‑specific sulfatase‑maturating enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,984,1930GA100.0% 182.0 / NA 57*412* (TAG→TAA) aslBputative AslA‑specific sulfatase‑maturating enzyme
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (30/27);  total (30/27)

GTGCCGGGTATCAGCGTTATTTCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAGAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAG  >  NC_000913/3984069‑3984327
                                                                                                                            |                                                                                                                                      
gtgCCGGGTATCAGCGTTATTTCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGgccgc                                                                                                                          >  2:64579/1‑139 (MQ=255)
gtgCCGGGTATCAGCGTTATTTCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGgccgc                                                                                                                          >  1:1443413/1‑139 (MQ=255)
gtgCCGGGTATCAGCGTTATTTCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGgccgc                                                                                                                          <  2:1550955/139‑1 (MQ=255)
  gCCGGGTATCAGCGTTATTTCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCt                                                                                                                        >  2:297381/1‑139 (MQ=255)
          tCAGCGTTATTTCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGa                                                                                                                <  1:64579/139‑1 (MQ=255)
                    ttCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATg                                                                                                      <  2:1443413/139‑1 (MQ=255)
                      ccGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATgcg                                                                                                    <  1:297381/139‑1 (MQ=255)
                        gCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATgcggc                                                                                                  >  1:740672/1‑139 (MQ=255)
                                      tatCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATc                                                                                    >  1:1021554/1‑139 (MQ=255)
                                      tatCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATc                                                                                    >  2:1156538/1‑139 (MQ=255)
                                      tatCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATc                                                                                    <  2:1021554/139‑1 (MQ=255)
                                        tCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  1:1156538/139‑1 (MQ=255)
                                        tCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  2:836785/139‑1 (MQ=255)
                                           tAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGgccgcc                                                                                                                         <  2:701078/97‑1 (MQ=255)
                                           tAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGgccgcc                                                                                                                         >  1:701078/1‑97 (MQ=255)
                                             aaGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  2:879214/134‑1 (MQ=255)
                                             aaGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  >  1:879214/1‑134 (MQ=255)
                                                cAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATgcg                                                                                                    <  2:987609/113‑1 (MQ=255)
                                                cAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATgcg                                                                                                    >  1:987609/1‑113 (MQ=255)
                                                 aaTGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  2:1544835/130‑1 (MQ=255)
                                                 aaTGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  >  1:1544835/1‑130 (MQ=255)
                                                  aTGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  >  2:475626/1‑129 (MQ=255)
                                                  aTGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  1:475626/129‑1 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGa                                                                                                                >  1:779104/1‑98 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGa                                                                                                                <  2:779104/98‑1 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATgc                                                                                                     <  2:1579157/109‑1 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATgc                                                                                                     >  1:1579157/1‑109 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  2:401788/128‑1 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  1:1472264/128‑1 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  >  2:871731/1‑128 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  >  2:1472264/1‑128 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  >  1:401788/1‑128 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  1:871731/128‑1 (MQ=255)
                                                   tGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGAt                                                                       >  1:1654953/1‑139 (MQ=255)
                                                        gATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGc                                                                  <  2:1654953/139‑1 (MQ=255)
                                                              cTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTc                                                            >  2:1259183/1‑139 (MQ=255)
                                                                              cGGCCAGCGACATTATGCATGCGCATGTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGtt                                            >  2:408334/1‑139 (MQ=255)
                                                                                 ccAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTg                                         >  2:459614/1‑139 (MQ=255)
                                                                                              gcatgcGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATTGTGCAAATTCAATAAATTGAAGCGTTCTGTAGGCTGGATaa                             <  2:581072/138‑1 (MQ=255)
                                                                                              gcatgcGCATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATaa                             >  1:581072/1‑138 (MQ=255)
                                                                                                  gcgcATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                                >  1:1212241/1‑83 (MQ=255)
                                                                                                  gcgcATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                                <  2:1212241/83‑1 (MQ=255)
                                                                                                  gcgcATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGc                        >  2:463590/1‑139 (MQ=255)
                                                                                                   cgcATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGa                           >  1:1485507/1‑135 (MQ=255)
                                                                                                   cgcATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGa                           <  2:1485507/135‑1 (MQ=255)
                                                                                                   cgcATTTGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCg                       >  2:1005095/1‑139 (MQ=255)
                                                                                                       tttGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGa                           >  1:1417615/1‑131 (MQ=255)
                                                                                                       tttGCTGGTGGTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGa                           <  2:1417615/131‑1 (MQ=255)
                                                                                                            tggtggTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGAt                                                                                                       >  1:1167124/1‑50 (MQ=255)
                                                                                                            tggtggTGAGTAAGTAAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGAt                                                                                                       <  2:1167124/50‑1 (MQ=255)
                                                                                                                    agtaagtaAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  <  2:422589/63‑1 (MQ=255)
                                                                                                                    agtaagtaAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                                  >  1:422589/1‑63 (MQ=255)
                                                                                                                    agtaagtaAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAAt                                                         <  2:191795/88‑1 (MQ=255)
                                                                                                                    agtaagtaAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAAt                                                         >  1:191795/1‑88 (MQ=255)
                                                                                                                    agtaagtaAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGc      >  2:1294084/1‑139 (MQ=255)
                                                                                                                    agtaagtaAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGc      <  1:463590/139‑1 (MQ=255)
                                                                                                                     gtaagtaaAAATCGGCGGCCGCCTGCGGTTGATTGc                                                                                                            <  2:191137/36‑1 (MQ=255)
                                                                                                                     gtaagtaaAAATCGGCGGCCGCCTGCGGTTGATTGc                                                                                                            >  1:191137/1‑36 (MQ=255)
                                                                                                                        agtaAAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAg  <  1:459614/139‑1 (MQ=255)
                                                                                                                            |                                                                                                                                      
GTGCCGGGTATCAGCGTTATTTCCGCCATCTACCGCCATATCTTAAAGCAATGGCTGATTTGCTGGCGCACGGTCGCCCGGCCAGCGACATTATGCATGCGCATTTGCTGGTGGTGAGTAAGTAGAAATCGGCGGCCGCCTGCGGTTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATGATCGTGCAAATTCAATAAATTGCAGCGTTCTGTAGGCTGGATAAGATGCGTCAGCATCGCATCCGGCAAAG  >  NC_000913/3984069‑3984327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A