Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13141516 F55 I0 R1 152 392.1 11706698 99.5% 11648164 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,831,557 G→A 28.0% intergenic (‑6/+90) U712_19755 ← / ← U712_19760 Transcription antiterminator LicT/Uncharacterized protein yxiP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,831,5570GA28.0% 771.8 / 292.0 391intergenic (‑6/+90)U712_19755/U712_19760Transcription antiterminator LicT/Uncharacterized protein yxiP
Reads supporting (aligned to +/- strand):  ref base G (131/150);  new base A (48/62);  total (179/212)
Fisher's exact test for biased strand distribution p-value = 6.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01

Only 100 of 396 total aligned reads displayed.

GAACACTTTCTCAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAAGCAGCGCCTCCAGATG  >  CP006881/3831408‑3831706
                                                                                                                                                     |                                                                                                                                                     
  acacTTTCTCAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATc                                                                                                                                                     >  1:1306624/1‑150 (MQ=255)
      tttCTCAATGCGGGCTTCATCGAGATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCCTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTACATGGCATGTCCCTc                                                                                                                                                 <  1:2522488/150‑1 (MQ=255)
      tttCTCAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTc                                                                                                                                                 >  2:2488025/1‑150 (MQ=255)
        tctcAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCa                                                                                                                                               <  2:435741/150‑1 (MQ=255)
         ctcAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCaa                                                                                                                                              >  2:4599978/1‑150 (MQ=255)
         ctcAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCaa                                                                                                                                              >  2:1157083/1‑150 (MQ=255)
           cAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAAt                                                                                                                                            >  1:544240/1‑150 (MQ=255)
            aaTGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATc                                                                                                                                           >  1:91618/1‑150 (MQ=255)
               gCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGGCCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctac                                                                                                                                        >  2:3941576/1‑150 (MQ=255)
                cGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact                                                                                                                                       <  2:3412539/150‑1 (MQ=255)
                 gggCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATctacta                                                                                                                                      >  2:5268853/1‑150 (MQ=255)
                   gCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAg                                                                                                                                    <  1:523585/150‑1 (MQ=255)
                   gCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAg                                                                                                                                    <  2:1659672/150‑1 (MQ=255)
                   gCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAg                                                                                                                                    >  2:19965/1‑150 (MQ=255)
                      tCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAAc                                                                                                                                 <  1:3966942/150‑1 (MQ=255)
                       cATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACa                                                                                                                                <  2:1525233/150‑1 (MQ=255)
                         tCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGa                                                                                                                              <  2:4530806/150‑1 (MQ=255)
                          cGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGAc                                                                                                                             <  1:261892/150‑1 (MQ=255)
                          cGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGAc                                                                                                                             >  2:3785764/1‑150 (MQ=255)
                          cGACATCATCGCCGGACCTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGAc                                                                                                                             <  2:3227778/150‑1 (MQ=255)
                           gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCGCTGCCCATGACGACCAATTCTGCCCCCTGTTCATTGACGACGCTGATCACATTATTGTTGATCGCCTTCGCAATTTTGATGGCATATCCCTCCAAATCTACTAAGAACAGACt                                                                                                                            >  1:3158310/1‑150 (MQ=255)
                           gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACt                                                                                                                            <  2:2383489/150‑1 (MQ=255)
                             catcatCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACtat                                                                                                                          >  1:2420733/1‑150 (MQ=255)
                              atcatcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACtata                                                                                                                         >  1:374973/1‑150 (MQ=255)
                              atcatcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACtata                                                                                                                         >  1:1810738/1‑150 (MQ=255)
                               tcatcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTatat                                                                                                                        <  2:3895638/150‑1 (MQ=255)
                               tcatcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTatat                                                                                                                        <  1:666770/150‑1 (MQ=255)
                                catcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATc                                                                                                                       <  2:5177865/150‑1 (MQ=255)
                                 atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCt                                                                                                                      >  1:791838/1‑150 (MQ=255)
                                  tcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCtt                                                                                                                     <  2:90117/150‑1 (MQ=255)
                                  tcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCtt                                                                                                                     >  1:1065283/1‑150 (MQ=255)
                                   cGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTg                                                                                                                    <  1:1407030/150‑1 (MQ=255)
                                         aCTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTa                                                                                                              >  1:4277867/1‑150 (MQ=255)
                                         aCTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTa                                                                                                              >  1:2030446/1‑150 (MQ=255)
                                          cTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTAc                                                                                                             <  2:5562136/150‑1 (MQ=255)
                                          cTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTAc                                                                                                             <  2:3031342/150‑1 (MQ=255)
                                           tttttCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACa                                                                                                            >  2:1908112/1‑150 (MQ=255)
                                             tttCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACAtt                                                                                                          <  2:3681038/150‑1 (MQ=255)
                                             tttCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACAtt                                                                                                          >  2:5021923/1‑150 (MQ=255)
                                                 tGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCttt                                                                                                      <  2:4124001/150‑1 (MQ=255)
                                                 tGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCttt                                                                                                      <  2:4449955/150‑1 (MQ=255)
                                                  gAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCATGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCtttt                                                                                                     <  1:5526696/150‑1 (MQ=255)
                                                  gAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCtttt                                                                                                     <  2:5384689/150‑1 (MQ=255)
                                                    aaCGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTg                                                                                                   <  2:1398249/150‑1 (MQ=255)
                                                     aCGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGt                                                                                                  <  1:5102732/150‑1 (MQ=255)
                                                         gAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTa                                                                                              >  1:3890645/1‑150 (MQ=255)
                                                         gAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTa                                                                                              >  1:4089456/1‑150 (MQ=255)
                                                          aGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAg                                                                                             <  2:1099447/150‑1 (MQ=255)
                                                           gCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAgg                                                                                            <  2:5846847/150‑1 (MQ=255)
                                                                cTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAat                                                                                       >  1:4835499/1‑150 (MQ=255)
                                                                  gCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCATCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGTCTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAatat                                                                                     <  1:3689215/150‑1 (MQ=255)
                                                                   cccATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATatc                                                                                    <  2:56786/150‑1 (MQ=255)
                                                                      aTGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATatcatc                                                                                 >  1:4982177/1‑150 (MQ=255)
                                                                      aTGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTACAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGCCAATatcatc                                                                                 <  2:3530216/150‑1 (MQ=255)
                                                                          cgacCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAggg                                                                             >  1:1667016/1‑150 (MQ=255)
                                                                            acCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGaa                                                                           >  2:3300414/1‑150 (MQ=255)
                                                                            acCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGaa                                                                           >  2:4211205/1‑150 (MQ=255)
                                                                             ccAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGaaa                                                                          <  1:1505336/150‑1 (MQ=255)
                                                                              cAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAg                                                                         <  1:4211205/150‑1 (MQ=255)
                                                                               aaTTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGa                                                                        >  2:3631273/1‑150 (MQ=255)
                                                                               aaTTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGa                                                                        >  2:2771702/1‑150 (MQ=255)
                                                                                aTTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGAc                                                                       >  1:3060215/1‑150 (MQ=255)
                                                                                aTTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGAc                                                                       <  1:3413845/150‑1 (MQ=255)
                                                                                 ttCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACg                                                                      >  1:3502922/1‑150 (MQ=255)
                                                                                    tttCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGaa                                                                   <  2:2872207/150‑1 (MQ=255)
                                                                                    tttCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGaa                                                                   <  2:2963461/150‑1 (MQ=255)
                                                                                        cccTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTg                                                               <  1:2219202/150‑1 (MQ=255)
                                                                                          cTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGt                                                             >  1:1987565/1‑150 (MQ=255)
                                                                                           tGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTc                                                            >  1:720401/1‑150 (MQ=255)
                                                                                                aTTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTAc                                                       <  2:4024863/150‑1 (MQ=255)
                                                                                                  tGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACaa                                                     >  2:2359527/1‑150 (MQ=255)
                                                                                                   gACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAAt                                                    >  1:2076335/1‑150 (MQ=255)
                                                                                                   gACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAAt                                                    <  2:2591037/150‑1 (MQ=255)
                                                                                                    aCCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAAtt                                                   >  2:1628567/1‑150 (MQ=255)
                                                                                                      cACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCa                                                 >  2:749726/1‑150 (MQ=255)
                                                                                                         gCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTc                                              <  1:4368287/150‑1 (MQ=255)
                                                                                                           tGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCg                                            >  2:205138/1‑150 (MQ=255)
                                                                                                           tGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCg                                            <  1:3360083/150‑1 (MQ=255)
                                                                                                            gATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGt                                           >  1:5833132/1‑150 (MQ=255)
                                                                                                              tCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTAc                                         >  2:1959828/1‑150 (MQ=255)
                                                                                                              tCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTAc                                         <  2:479812/150‑1 (MQ=255)
                                                                                                                acaTTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACct                                       <  1:5347286/150‑1 (MQ=255)
                                                                                                                 caTTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                                      <  1:3714044/150‑1 (MQ=255)
                                                                                                                   ttattGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctgct                                    <  2:5528702/150‑1 (MQ=255)
                                                                                                                     attGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCtgctgc                                  >  1:2652073/1‑150 (MQ=255)
                                                                                                                        gttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCg                               >  1:2788831/1‑150 (MQ=255)
                                                                                                                           gATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGc                            <  1:5569853/150‑1 (MQ=255)
                                                                                                                                  ttCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGttttt                     >  1:4711378/1‑150 (MQ=255)
                                                                                                                                  ttCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATAACTTGATTGTACATTCTTTTTGTACTAGGTCAATAACATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGttttt                     <  1:2897982/150‑1 (MQ=255)
                                                                                                                                    cGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGa                   >  1:4552001/1‑150 (MQ=255)
                                                                                                                                      cAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAag                 >  2:2198761/1‑150 (MQ=255)
                                                                                                                                      cAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAag                 <  2:2677856/150‑1 (MQ=255)
                                                                                                                                       aaTTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGGACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCCGCTGCCCGGTCTGTGTTTGAagc                >  2:785564/1‑150 (MQ=255)
                                                                                                                                       aaTTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAagc                >  1:3558559/1‑150 (MQ=255)
                                                                                                                                         ttttCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAagcag              <  2:1786272/150‑1 (MQ=255)
                                                                                                                                           ttCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAAGCAgcg            <  1:3631273/150‑1 (MQ=255)
                                                                                                                                              aTGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAAGCAGCGCCt         <  1:1019776/150‑1 (MQ=255)
                                                                                                                                                 gCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAAGCAGCGCCTCCa      >  1:2567124/1‑150 (MQ=255)
                                                                                                                                                 gCATGTCCCTCAAAAACTACAAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCACGGGCTGTTTTTGAAGCAGCGCCTCCa      <  2:841758/150‑1 (MQ=255)
                                                                                                                                                     gTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAAGCAGCGCCTCCAGATg  <  2:128453/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GAACACTTTCTCAATGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTTGAAGCAGCGCCTCCAGATG  >  CP006881/3831408‑3831706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A