Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F56 I0 R1 198 55.3 2323794 95.3% 2214575 126.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,831,557 G→A 100% intergenic (‑6/+90) U712_19755 ← / ← U712_19760 Transcription antiterminator LicT/Uncharacterized protein yxiP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,831,5570GA98.9% 240.0 / ‑5.8 70intergenic (‑6/+90)U712_19755/U712_19760Transcription antiterminator LicT/Uncharacterized protein yxiP
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (33/36);  total (34/36)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTT  >  CP006881/3831425‑3831685
                                                                                                                                    |                                                                                                                                
gggCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTc                                                                                                                            <  5:39371/139‑1 (MQ=255)
  gCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTcc                                                                                                                           >  5:283980/1‑138 (MQ=255)
      cATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt                                                                                                                       <  8:284936/138‑1 (MQ=255)
      cATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt                                                                                                                       <  2:34092/138‑1 (MQ=255)
      cATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt                                                                                                                       <  3:13108/138‑1 (MQ=255)
          gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact                                                                                                                  <  5:109230/139‑1 (MQ=255)
          gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCAATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact                                                                                                                  <  1:276725/139‑1 (MQ=255)
              tcatcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAg                                                                                                               >  6:34687/1‑138 (MQ=255)
                atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  1:251678/138‑1 (MQ=255)
                atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  7:113374/138‑1 (MQ=255)
                atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  2:191504/138‑1 (MQ=255)
                atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  5:272321/138‑1 (MQ=255)
                atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  5:240663/138‑1 (MQ=255)
                atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  4:120202/138‑1 (MQ=255)
                atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAAc                                                                                                            <  6:283980/139‑1 (MQ=255)
                    ccGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGAc                                                                                                        <  4:97576/139‑1 (MQ=255)
                    acGGACGGTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGGTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGAc                                                                                                        <  8:25298/138‑1 (MQ=255)
                            tttCTGAAACGCGAGCCCCCTGCCCCTGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTTTTGCTCACCTTCGGAAATTTCATGGCATATCCCTCCAAATATACTAAGAACAGACTATAACtt                                                                                                >  3:255786/1‑139 (MQ=255)
                               cTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGCCTATATCTTGa                                                                                              <  2:265445/138‑1 (MQ=255)
                                      gcgAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACAt                                                                                      <  3:164901/139‑1 (MQ=255)
                                           cccccTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCttt                                                                                 <  8:235455/139‑1 (MQ=255)
                                            ccccTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCtttt                                                                                <  5:268920/139‑1 (MQ=255)
                                                  cccATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTAc                                                                           <  3:227750/138‑1 (MQ=255)
                                                            ccAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             >  5:169247/1‑94 (MQ=255)
                                                            ccAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  6:169247/94‑1 (MQ=255)
                                                                    ttCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCAAAATCAACTAAGAACAGACTATATCTTGATTGTACATTATTTTTTTACTAGTGCAAAATCATCAgg                                                         >  8:239151/1‑138 (MQ=255)
                                                                     tCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAggg                                                        >  3:132279/1‑138 (MQ=255)
                                                                     tCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAggg                                                        >  3:16696/1‑138 (MQ=255)
                                                                      ccccTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGa                                                       <  5:34687/138‑1 (MQ=255)
                                                                          tGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGAc                                                  >  6:256798/1‑139 (MQ=255)
                                                                          tGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGAc                                                  >  2:213770/1‑139 (MQ=255)
                                                                           gTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt                                                                                                                       >  3:103639/1‑69 (MQ=255)
                                                                           gTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt                                                                                                                       <  4:103639/69‑1 (MQ=255)
                                                                            ttCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACg                                                 >  5:95136/1‑138 (MQ=255)
                                                                            ttCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACg                                                 >  6:195828/1‑138 (MQ=255)
                                                                             tCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACgg                                                >  8:74051/1‑138 (MQ=255)
                                                                               aTTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg                                             <  2:41036/139‑1 (MQ=255)
                                                                                 tGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact                                                                                                                  >  3:230214/1‑68 (MQ=255)
                                                                                 tGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact                                                                                                                  <  4:230214/68‑1 (MQ=255)
                                                                                    ccACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTggg                                        <  3:113077/139‑2 (MQ=255)
                                                                                    ccACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGt                                        <  7:74051/139‑1 (MQ=255)
                                                                                    ccACGCTGAGCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGt                                        <  5:152375/139‑1 (MQ=255)
                                                                                         cTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCGAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTa                                   <  5:99367/139‑1 (MQ=255)
                                                                                                caTTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCa                            <  7:239151/139‑1 (MQ=255)
                                                                                                caTTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCa                            <  6:130491/139‑1 (MQ=255)
                                                                                                   tattGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAg                                                                        >  4:249906/1‑92 (MQ=255)
                                                                                                   tattGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAg                                                                        <  3:249906/92‑1 (MQ=255)
                                                                                                    attGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTcc                        >  7:269098/1‑139 (MQ=255)
                                                                                                      tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCg                       >  1:204990/1‑138 (MQ=255)
                                                                                                      tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGCTCAGTACAATTCACTCCg                       >  8:237729/1‑138 (MQ=255)
                                                                                                        ttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTAc                    >  4:215518/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             >  3:60303/1‑47 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa                                                                                                             <  4:60303/47‑1 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGt                      <  3:241441/134‑1 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGt                      >  4:241441/1‑134 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  3:17784/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  1:271230/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  5:270515/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  7:162224/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  2:163496/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  4:149507/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  2:228681/1‑139 (MQ=255)
                                                                                                           aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg                 >  3:277450/1‑139 (MQ=255)
                                                                                                           aTCACCATCGCAATTTTCATGGCATGACCCTCCAAATCAACTAAGAACAGACTATATATTCATTGAACATTCTTTTTTTACTAGGTCAATATAATCAGGGAAAGACGGAAGCTCGTCAGTACAATTCACTCCGAACctt                 >  8:114502/1‑138 (MQ=255)
                                                                                                                  tCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCa                                                                    >  7:31941/1‑81 (MQ=255)
                                                                                                                  tCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCa                                                                    <  8:31941/81‑1 (MQ=255)
                                                                                                                  tCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCg          >  3:189554/1‑139 (MQ=255)
                                                                                                                          ttCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGttt  >  4:110550/1‑139 (MQ=255)
                                                                                                                             aTGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGc       <  7:234237/131‑1 (MQ=255)
                                                                                                                             aTGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGc       >  8:234237/1‑131 (MQ=255)
                                                                                                                                    |                                                                                                                                
GGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTT  >  CP006881/3831425‑3831685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A